Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 1.2e-200 703.0 364 100.0
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 5.4e-148 528.1 364 80.8
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 3.2e-132 475.7 364 68.4
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 3.0e-130 469.2 361 67.0
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 2.5e-129 466.1 363 68.0
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 5.6e-129 464.9 362 66.9
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 2.1e-128 463.0 362 68.2
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 1.8e-127 459.9 363 68.6
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 6.8e-127 458.0 363 65.3
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 4.9e-125 451.8 361 66.5
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 6.4e-125 451.4 361 65.7
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 7.1e-124 448.0 362 65.7
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 4.6e-123 445.3 363 63.9
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 4.6e-123 445.3 362 64.6
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 2.3e-122 443.0 363 64.2
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 3.0e-122 442.6 363 64.2
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 1.5e-121 440.3 365 65.2
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.5e-121 440.3 363 64.5
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.5e-121 440.3 363 64.5
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 2.5e-121 439.5 377 62.6
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 2.1e-120 436.4 364 65.1
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 2.8e-120 436.0 363 66.1
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 3.6e-120 435.6 364 65.1
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 6.2e-120 434.9 370 63.8
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 6.2e-120 434.9 364 63.2
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 8.1e-120 434.5 363 63.4
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 1.1e-119 434.1 364 64.8
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 1.4e-119 433.7 378 63.8
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 1.4e-119 433.7 360 63.3
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 2.4e-119 433.0 381 61.4
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 4.0e-119 432.2 360 63.9
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 5.2e-119 431.8 366 65.0
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 6.8e-119 431.4 367 64.3
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 8.9e-119 431.0 367 64.0
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 1.2e-118 430.6 367 62.4
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 1.2e-118 430.6 359 63.5
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 3.4e-118 429.1 359 62.7
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 7.6e-118 427.9 354 62.7
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 1.3e-117 427.2 363 60.6
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.7e-117 426.8 355 62.0
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 2.2e-117 426.4 363 62.5
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 2.2e-117 426.4 362 63.8
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 4.9e-117 425.2 355 61.7
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 6.4e-117 424.9 362 61.9
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 6.4e-117 424.9 361 61.2
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 6.4e-117 424.9 364 62.4
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 1.9e-116 423.3 362 62.7
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 2.4e-116 422.9 365 61.1
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 2.4e-116 422.9 366 60.9
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 3.2e-116 422.5 366 62.3
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 9.2e-116 421.0 365 63.8
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 1.6e-115 420.2 362 62.2
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 3.9e-114 415.6 358 61.7
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 5.1e-114 415.2 372 58.6
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 5.1e-114 415.2 400 59.8
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 8.7e-114 414.5 366 61.2
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 1.5e-113 413.7 365 60.8
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 1.9e-113 413.3 360 61.4
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 1.9e-113 413.3 360 60.6
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 3.3e-113 412.5 359 60.4
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 4.3e-113 412.1 372 58.6
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 1.3e-112 410.6 369 61.5
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 1.6e-112 410.2 382 59.9
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 2.8e-112 409.5 362 61.0
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 1.1e-111 407.5 360 60.6
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 1.8e-111 406.8 378 60.3
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 2.4e-111 406.4 362 59.9
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 5.3e-111 405.2 368 60.3
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 9.0e-111 404.4 368 60.3
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 9.0e-111 404.4 364 60.2
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 2.0e-110 403.3 357 61.3
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 2.2e-109 399.8 362 60.2
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 4.9e-109 398.7 430 53.0
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 4.2e-108 395.6 369 58.5
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 1.2e-107 394.0 366 57.9
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 2.7e-107 392.9 365 60.8
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 1.0e-106 391.0 366 57.7
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 2.3e-106 389.8 381 55.6
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 6.6e-106 388.3 371 59.3
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 1.3e-104 384.0 386 53.4
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 6.2e-104 381.7 360 59.7
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 1.7e-101 373.6 342 58.5
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 3.8e-101 372.5 337 61.1
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.4e-100 370.5 379 57.8
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 9.3e-100 367.9 365 57.8
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 4.6e-99 365.5 361 55.1
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 7.9e-99 364.8 364 56.3
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.8e-98 363.6 343 59.8
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 3.3e-97 359.4 363 55.6
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 5.6e-97 358.6 373 52.3
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 2.1e-96 356.7 367 53.4
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 1.8e-95 353.6 360 54.4
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 2.4e-95 353.2 369 54.5
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 1.5e-94 350.5 383 53.0
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.5e-94 350.5 363 56.5
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 2.0e-94 350.1 363 56.5
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 7.6e-94 348.2 360 54.2
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 1.0e-93 347.8 362 53.3
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 2.9e-93 346.3 380 52.4
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 1.1e-92 344.4 362 52.8
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 2.5e-92 343.2 430 47.7
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 3.9e-90 335.9 380 49.7
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 8.7e-90 334.7 380 49.5
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 2.5e-89 333.2 384 51.6
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 2.8e-88 329.7 388 49.2
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 2.8e-88 329.7 353 53.5
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 6.7e-82 308.5 380 46.3
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 8.7e-82 308.1 374 46.5
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 1.1e-81 307.8 379 46.7
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 1.1e-81 307.8 379 46.7
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 4.3e-81 305.8 383 46.0
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 9.7e-81 304.7 379 46.4
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 2.4e-79 300.1 376 46.5
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 3.9e-74 282.7 343 49.6
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 2.9e-69 266.5 390 41.0
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 1.9e-68 263.8 228 62.3
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 2.6e-65 253.4 216 62.0
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 9.7e-65 251.5 363 45.5
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 8.2e-64 248.4 369 40.1
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 3.8e-61 239.6 291 49.1
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.9e-60 237.3 186 65.6
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 1.5e-57 227.6 439 36.0
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 7.2e-52 208.8 209 56.9
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 2.3e-50 203.8 282 44.0
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 8.5e-45 185.3 364 34.1
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 1.4e-39 167.9 119 70.6
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 4.5e-38 162.9 124 70.2
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 5.9e-38 162.5 159 56.6
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 8.1e-19 99.0 118 51.7
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 2.0e-17 94.4 228 30.3
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 9.8e-17 92.0 412 26.5
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 2.4e-15 87.4 70 60.0
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 7.1e-15 85.9 53 75.5
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 2.7e-14 84.0 100 45.0
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 1.5e-12 78.2 53 66.0
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 6.2e-11 72.8 50 68.0
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 1.8e-10 71.2 249 26.9
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 4.0e-10 70.1 57 61.4
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 6.8e-10 69.3 74 54.1
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea HOM05D002744 ORTHO05D006546 8.9e-10 68.9 74 52.7
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 1.2e-09 68.6 59 61.0
Cfa025636 Carpinus fangiana HOM05D002744 ORTHO05D006546 8.4e-08 62.4 407 25.1


User provided reference genes

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