Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1210 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.3e-185 652.9 324 100.0
TAR365G0817 Trochodendron aralioides HOM05D004257 ORTHO05D005202 1.6e-140 503.1 301 83.1
TAR362G0002 Trochodendron aralioides HOM05D004257 ORTHO05D005202 1.4e-139 500.0 310 80.0
Aqoxy5G00217 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 9.0e-139 497.3 298 83.2
Aqoxy2G03662 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 1.5e-138 496.5 299 82.6
Hma1.2p1_0075F.1_g039210 Hydrangea macrophylla HOM05D004257 ORTHO05D005202 2.0e-138 496.1 299 81.9
CSS0006901 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 4.5e-138 495.0 300 80.7
CSS0016221 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 4.5e-138 495.0 300 80.7
Nn3g19680 Nelumbo nucifera HOM05D004257 ORTHO05D005202 4.5e-138 495.0 301 82.1
Dinv06012 Davidia involucrata HOM05D004257 ORTHO05D005202 7.7e-138 494.2 299 81.9
Nitab4.5_0000936g0060 Nicotiana tabacum HOM05D004257 ORTHO05D005202 2.9e-137 492.3 302 80.8
PGSC0003DMG402031052 Solanum tuberosum HOM05D004257 ORTHO05D005202 6.5e-137 491.1 301 80.4
CAN.G637.23 Capsicum annuum HOM05D004257 ORTHO05D005202 3.2e-136 488.8 299 80.9
Peaxi162Scf00171g00722 Petunia axillaris HOM05D004257 ORTHO05D005202 9.4e-136 487.3 298 80.5
CDE02G1046 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.6e-135 486.5 298 84.6
Migut.O00233 Erythranthe guttata HOM05D004257 ORTHO05D005202 1.6e-135 486.5 305 80.0
Nitab4.5_0004454g0010 Nicotiana tabacum HOM05D004257 ORTHO05D005202 2.1e-135 486.1 302 80.1
MSTRG.23192 Avicennia marina HOM05D004257 ORTHO05D005202 3.6e-135 485.3 310 78.1
Cc04_g09710 Coffea canephora HOM05D004257 ORTHO05D005202 1.4e-134 483.4 312 76.3
DCAR_010071 Daucus carota HOM05D004257 ORTHO05D005202 1.8e-134 483.0 296 80.4
Potri.005G225700 Populus trichocarpa HOM05D004257 ORTHO05D005202 1.8e-134 483.0 307 77.5
Hund06906 Selenicereus undatus HOM05D004257 ORTHO05D005202 3.9e-134 481.9 307 76.9
Solyc03g098140.3 Solanum lycopersicum HOM05D004257 ORTHO05D005202 3.9e-134 481.9 302 78.8
MSTRG.11529 Avicennia marina HOM05D004257 ORTHO05D005202 5.1e-134 481.5 303 78.5
Sopen03g028840 Solanum pennellii HOM05D004257 ORTHO05D005202 6.7e-134 481.1 302 78.8
SGA_v2.0_scaffold90G27780 Striga asiatica HOM05D004257 ORTHO05D005202 2.5e-133 479.2 303 77.6
Manes.12G033300 Manihot esculenta HOM05D004257 ORTHO05D005202 7.4e-133 477.6 277 83.0
Potri.002G037400 Populus trichocarpa HOM05D004257 ORTHO05D005202 1.7e-132 476.5 307 76.5
Sabra02G0030200 Salix brachista HOM05D004257 ORTHO05D005202 2.2e-132 476.1 307 76.2
Actinidia38939 Actinidia chinensis HOM05D004257 ORTHO05D005202 4.8e-132 474.9 306 75.8
PSO210G0560 Papaver somniferum HOM05D004257 ORTHO05D005202 4.8e-132 474.9 283 80.2
PSO832G0932 Papaver somniferum HOM05D004257 ORTHO05D005202 6.3e-132 474.6 283 80.2
DCAR_014267 Daucus carota HOM05D004257 ORTHO05D005202 1.4e-131 473.4 297 78.1
Lj5A229T68 Lonicera japonica HOM05D004257 ORTHO05D005202 4.1e-131 471.9 295 80.0
FvH4_2g21300 Fragaria vesca HOM05D004257 ORTHO05D005202 5.3e-131 471.5 304 76.3
FAN20G1479 Fragaria x ananassa HOM05D004257 ORTHO05D005202 5.3e-131 471.5 304 76.3
PSO675G6112 Papaver somniferum HOM05D004257 ORTHO05D005202 5.3e-131 471.5 283 78.8
PSO675G8755 Papaver somniferum HOM05D004257 ORTHO05D005202 5.3e-131 471.5 283 78.8
Ah.04g163130 Amaranthus hybridus HOM05D004257 ORTHO05D005202 1.2e-130 470.3 282 80.1
CANSAT35G1745 Cannabis sativa HOM05D004257 ORTHO05D005202 1.2e-130 470.3 294 76.9
CsaV3_3G022160 Cucumis sativus L. HOM05D004257 ORTHO05D005202 1.5e-130 469.9 307 75.9
FAN27G2888 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.5e-130 469.9 304 76.0
ClCG07G001120 Citrullus lanatus HOM05D004257 ORTHO05D005202 2.0e-130 469.5 313 74.4
COL.COLO4_04031 Corchorus olitorius HOM05D004257 ORTHO05D005202 2.0e-130 469.5 303 75.6
AUR62004833 Chenopodium quinoa HOM05D004257 ORTHO05D005202 5.9e-130 468.0 300 77.3
AUR62040921 Chenopodium quinoa HOM05D004257 ORTHO05D005202 7.7e-130 467.6 300 77.3
FAN24G1061 Fragaria x ananassa HOM05D004257 ORTHO05D005202 7.7e-130 467.6 303 76.6
Thecc.01G256600 Theobroma cacao HOM05D004257 ORTHO05D005202 1.7e-129 466.5 310 74.2
Duzib138G0002 Durio zibethinus HOM05D004257 ORTHO05D005202 2.2e-129 466.1 303 75.6
Sed0014699 Sechium edule HOM05D004257 ORTHO05D005202 3.8e-129 465.3 311 74.0
MELO3C012874.2 Cucumis melo HOM05D004257 ORTHO05D005202 5.0e-129 464.9 287 79.1
PSO675G8702 Papaver somniferum HOM05D004257 ORTHO05D005202 6.5e-129 464.5 283 77.7
TWI18G0956 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 6.5e-129 464.5 307 73.3
FAN15G2746 Fragaria x ananassa HOM05D004257 ORTHO05D005202 8.5e-129 464.2 302 76.5
RcHm_v2.0_Chr6g0287891 Rosa chinensis HOM05D004257 ORTHO05D005202 1.1e-128 463.8 281 79.7
Duzib133G1463 Durio zibethinus HOM05D004257 ORTHO05D005202 1.4e-128 463.4 303 74.9
CANSAT01G0143 Cannabis sativa HOM05D004257 ORTHO05D005202 1.9e-128 463.0 290 76.6
Ciclev10021043m.g Citrus clementina HOM05D004257 ORTHO05D005202 1.9e-128 463.0 298 75.8
Cpa.g.sc473.3 Carica papaya HOM05D004257 ORTHO05D005202 2.5e-128 462.6 309 73.5
Gorai.001G178500 Gossypium raimondii HOM05D004257 ORTHO05D005202 3.2e-128 462.2 303 74.3
MBI07_g16916_MAGBIO Magnolia biondii HOM05D004257 ORTHO05D005202 4.2e-128 461.8 277 80.1
vmacro10363 Vaccinium macrocarpon HOM05D004257 ORTHO05D005202 7.2e-128 461.1 309 74.4
Gohir.A07G149400 Gossypium hirsutum HOM05D004257 ORTHO05D005202 9.4e-128 460.7 303 73.9
Gohir.D07G155600 Gossypium hirsutum HOM05D004257 ORTHO05D005202 9.4e-128 460.7 303 73.9
SalBow5G3197 Salvia bowleyana HOM05D004257 ORTHO05D005202 1.2e-127 460.3 292 77.7
SalBow5G4297 Salvia bowleyana HOM05D004257 ORTHO05D005202 1.2e-127 460.3 292 77.7
QL09p039362 Quercus lobata HOM05D004257 ORTHO05D005202 2.7e-127 459.1 298 75.2
Cfa002439 Carpinus fangiana HOM05D004257 ORTHO05D005202 6.1e-127 458.0 303 73.9
CiPaw.04G187400 Carya illinoinensis HOM05D004257 ORTHO05D005202 7.9e-127 457.6 307 73.3
Atru.chr5.1712 Acer truncatum HOM05D004257 ORTHO05D005202 1.0e-126 457.2 298 75.5
Eucgr.K03257 Eucalyptus grandis HOM05D004257 ORTHO05D005202 1.0e-126 457.2 308 74.4
Prupe.8G222200 Prunus persica HOM05D004257 ORTHO05D005202 5.1e-126 454.9 279 80.3
Sed0007154 Sechium edule HOM05D004257 ORTHO05D005202 1.1e-125 453.8 300 74.3
Gorai.007G147100 Gossypium raimondii HOM05D004257 ORTHO05D005202 2.0e-125 453.0 312 71.2
Sc09g0004250 Simmondsia chinensis HOM05D004257 ORTHO05D005202 2.6e-125 452.6 283 77.0
Gohir.A11G131450 Gossypium hirsutum HOM05D004257 ORTHO05D005202 5.7e-125 451.4 305 72.5
Gohir.D11G137300 Gossypium hirsutum HOM05D004257 ORTHO05D005202 2.2e-124 449.5 305 72.1
CiPaw.03G265600 Carya illinoinensis HOM05D004257 ORTHO05D005202 3.7e-124 448.7 311 71.4
PGR044G0150 Punica granatum HOM05D004257 ORTHO05D005202 4.8e-124 448.4 291 75.6
TWI12G0832 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 4.8e-124 448.4 300 72.7
BcaC02g09050 Brassica carinata HOM05D004257 ORTHO05D005202 2.4e-123 446.0 306 71.2
C04p37820 Brassica napus HOM05D004257 ORTHO05D005202 2.4e-123 446.0 306 71.2
BolC4t25358H Brassica oleracea HOM05D004257 ORTHO05D005202 2.4e-123 446.0 306 71.2
HanXRQChr17g0542071 Helianthus annuus HOM05D004257 ORTHO05D005202 4.1e-123 445.3 304 74.3
THA.LOC104825258 Tarenaya hassleriana HOM05D004257 ORTHO05D005202 5.3e-123 444.9 308 70.5
Lsat_1_v5_gn_3_39581 Lactuca sativa HOM05D004257 ORTHO05D005202 1.2e-122 443.7 306 72.9
MD05G1195500 Malus domestica HOM05D004257 ORTHO05D005202 1.2e-122 443.7 284 76.8
Haze_24645 Corylus avellana HOM05D004257 ORTHO05D005202 1.5e-122 443.4 334 67.7
BcaC08g44693 Brassica carinata HOM05D004257 ORTHO05D005202 2.6e-122 442.6 313 69.3
C06p22290 Brassica napus HOM05D004257 ORTHO05D005202 2.6e-122 442.6 313 69.3
MD10G1182800 Malus domestica HOM05D004257 ORTHO05D005202 2.6e-122 442.6 279 77.8
Aa31sc35G30 Aethionema arabicum HOM05D004257 ORTHO05D005202 7.7e-122 441.0 311 69.8
BolC6t37415H Brassica oleracea HOM05D004257 ORTHO05D005202 7.7e-122 441.0 313 69.3
CSS0001153 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.0e-121 440.7 299 74.9
A04p05160 Brassica napus HOM05D004257 ORTHO05D005202 1.7e-121 439.9 306 70.9
BraA04t16226Z Brassica rapa HOM05D004257 ORTHO05D005202 1.7e-121 439.9 306 70.9
AT3G54690 Arabidopsis thaliana HOM05D004257 ORTHO05D005202 2.9e-121 439.1 289 73.4
BcaB02g07726 Brassica carinata HOM05D004257 ORTHO05D005202 3.8e-121 438.7 314 68.5
Psat3g056800 Pisum sativum HOM05D004257 ORTHO05D005202 5.0e-121 438.3 281 75.4
arahy.Tifrunner.gnm1.ann1.63G7RJ Arachis hypogaea HOM05D004257 ORTHO05D005202 1.1e-120 437.2 288 74.3
Thhalv10010498m.g Eutrema salsugineum HOM05D004257 ORTHO05D005202 1.4e-120 436.8 318 67.6
Glyma.19G165400 Glycine max HOM05D004257 ORTHO05D005202 1.9e-120 436.4 301 72.1
AL5G35770 Arabidopsis lyrata HOM05D004257 ORTHO05D005202 2.5e-120 436.0 289 73.0
CARHR164610 Cardamine hirsuta HOM05D004257 ORTHO05D005202 3.2e-120 435.6 289 72.7
Sp5g07760 Schrenkiella parvula HOM05D004257 ORTHO05D005202 4.2e-120 435.3 320 68.1
Carub.0005s2129 Capsella rubella HOM05D004257 ORTHO05D005202 7.2e-120 434.5 289 72.7
Ca_08681_v3 Cicer arietinum L. HOM05D004257 ORTHO05D005202 9.4e-120 434.1 281 74.7
Medtr7g097060 Medicago truncatula HOM05D004257 ORTHO05D005202 1.2e-119 433.7 281 74.4
Phvul.001G161500 Phaseolus vulgaris HOM05D004257 ORTHO05D005202 1.2e-119 433.7 305 70.8
VMungo1383G3387 Vigna mungo HOM05D004257 ORTHO05D005202 2.7e-119 432.6 311 69.1
ATR0736G010 Amborella trichopoda HOM05D004257 ORTHO05D005202 6.1e-119 431.4 298 72.8
Lalb_Chr01g0019631 Lupinus albus HOM05D004257 ORTHO05D005202 8.8e-118 427.6 309 68.3
arahy.Tifrunner.gnm1.ann1.BG7UA0 Arachis hypogaea HOM05D004257 ORTHO05D005202 7.4e-117 424.5 309 69.3
Lj1g0005279 Lotus japonicus HOM05D004257 ORTHO05D005202 2.2e-116 422.9 308 67.5
EL10Ac4g09002 Beta vulgaris HOM05D004257 ORTHO05D005202 3.7e-116 422.2 271 77.1
CSS0049630 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.8e-115 419.9 299 72.2
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 3.8e-113 412.1 293 71.7
unitig_0.g1405 Utricularia gibba HOM05D004257 ORTHO05D005202 4.2e-112 408.7 302 71.5
GSVIVG01028350001 Vitis vinifera HOM05D004257 ORTHO05D005202 4.2e-112 408.7 305 69.2
TPR.G7131 Trifolium pratense HOM05D004257 ORTHO05D005202 1.4e-110 403.7 343 61.8
BraA07t29902Z Brassica rapa HOM05D004257 ORTHO05D005202 6.8e-110 401.4 313 64.9
HPP92_017366 Vanilla planifolia HOM05D004257 ORTHO05D005202 2.0e-109 399.8 302 67.2
AagrBONN_evm.TU.Sc2ySwM_344.1200 Anthoceros agrestis HOM05D004257 ORTHO05D005202 3.4e-109 399.1 278 68.7
HPP92_010358 Vanilla planifolia HOM05D004257 ORTHO05D005202 9.7e-109 397.5 282 69.5
BcaC05g28242 Brassica carinata HOM05D004257 ORTHO05D005202 1.1e-107 394.0 312 64.4
BolC5t33007H Brassica oleracea HOM05D004257 ORTHO05D005202 1.1e-107 394.0 312 64.4
Zm00001eb207770 Zea mays HOM05D004257 ORTHO05D005202 1.8e-107 393.3 304 65.8
AagrBONN_evm.TU.Sc2ySwM_344.3818 Anthoceros agrestis HOM05D004257 ORTHO05D005202 4.1e-107 392.1 276 67.4
Os02g0158300 Oryza sativa ssp. japonica HOM05D004257 ORTHO05D005202 4.1e-107 392.1 281 69.4
Zm00001eb232580 Zea mays HOM05D004257 ORTHO05D005202 7.0e-107 391.3 306 65.0
CSS0045427 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 2.7e-106 389.4 299 68.9
Mapoly0023s0132 Marchantia polymorpha HOM05D004257 ORTHO05D005202 2.7e-106 389.4 279 65.2
SMO367G0216 Selaginella moellendorffii HOM05D004257 ORTHO05D005202 1.9e-104 383.3 280 64.6
unitig_61.g26464 Utricularia gibba HOM05D004257 ORTHO05D005202 1.9e-104 383.3 302 66.6
Pp3c23_13620 Physcomitrium patens HOM05D004257 ORTHO05D005202 3.4e-101 372.5 271 64.9
CBR_g20340 Chara braunii HOM05D004257 ORTHO05D005202 4.5e-98 362.1 303 56.8
C05p42800 Brassica napus HOM05D004257 ORTHO05D005202 5.0e-97 358.6 255 69.4
Pp3c5_14840 Physcomitrium patens HOM05D004257 ORTHO05D005202 4.2e-96 355.5 271 63.5
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.0e-89 334.3 177 90.4
ECA246G4101 Erigeron canadensis HOM05D004257 ORTHO05D005202 8.9e-86 321.2 188 81.4
PSO470G0001 Papaver somniferum HOM05D004257 ORTHO05D005202 1.1e-83 314.3 192 78.1
BcaB02g08451 Brassica carinata HOM05D004257 ORTHO05D005202 7.3e-72 275.0 163 81.0
Pp3c24_11040 Physcomitrium patens HOM05D004257 ORTHO05D005202 7.3e-72 275.0 257 54.5
SEGI_22917 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 3.4e-69 266.2 186 66.7
SEGI_29481 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 3.4e-69 266.2 186 66.7
CAN.G65.83 Capsicum annuum HOM05D004257 ORTHO05D005202 8.9e-62 241.5 218 58.3
SGA_v2.0_scaffold25G10776 Striga asiatica HOM05D004257 ORTHO05D005202 1.3e-49 201.1 143 71.3
AagrBONN_evm.TU.Sc2ySwM_228.5393 Anthoceros agrestis HOM05D004257 ORTHO05D005202 9.3e-43 178.3 118 70.3
Actinidia34751 Actinidia chinensis HOM05D000378 ORTHO05D005202 3.9e-41 172.9 109 76.1
AagrBONN_evm.TU.Sc2ySwM_228.5394 Anthoceros agrestis HOM05D004257 ORTHO05D005202 8.1e-39 165.2 145 55.9
A07p22230 Brassica napus HOM05D004257 ORTHO05D005202 1.2e-34 151.4 96 75.0
Oeu036414.1 Olea europaea HOM05D004257 ORTHO05D005202 1.6e-34 151.0 81 85.2
Peaxi162Scf00643g00656 Petunia axillaris HOM05D004257 ORTHO05D005202 8.2e-31 138.7 119 65.5
SEGI_04972 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 8.2e-31 138.7 81 75.3
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 3.1e-30 136.7 179 45.8
BcaC07g39794 Brassica carinata HOM05D004257 ORTHO05D005202 5.5e-27 125.9 130 53.1
BolC8t50595H Brassica oleracea HOM05D004257 ORTHO05D005202 1.1e-24 118.2 130 50.0
Rhsim05G0133300 Rhododendron simsii HOM05D004257 ORTHO05D005202 1.1e-24 118.2 92 67.4
C08p29840 Brassica napus HOM05D004257 ORTHO05D005202 1.1e-22 111.7 130 47.7
Lj6g0021985 Lotus japonicus HOM05D004257 ORTHO05D236371 7.2e-19 99.0 78 61.5
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 7.2e-19 99.0 71 67.6
Pp3c2_23370 Physcomitrium patens HOM05D004257 ORTHO05D005202 2.3e-17 94.0 118 42.4
Lsat_1_v5_gn_8_28701 Lactuca sativa HOM05D004257 ORTHO05D005202 1.7e-15 87.8 50 78.0
Rhsim04G0042100 Rhododendron simsii HOM05D004257 ORTHO05D005202 1.2e-13 81.6 145 40.7
BcaB01g01067 Brassica carinata HOM05D004257 ORTHO05D092693 1.1e-11 75.1 100 45.0
CDE04G3164 Ceratophyllum demersum HOM05D004257 ORTHO05D130150 2.6e-08 63.9 36 80.6
RhsimUnG0176200 Rhododendron simsii HOM05D000026 ORTHO05D000127 5.7e-08 62.8 50 62.0


User provided reference genes

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