Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 3.2e-256 887.9 436 100.0
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 7.4e-237 823.5 436 92.7
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 4.7e-114 415.6 432 51.2
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 1.8e-102 377.1 430 48.1
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 4.5e-101 372.5 424 47.9
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 1.5e-99 367.5 423 47.3
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.2e-99 365.9 436 47.0
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 1.0e-97 361.3 461 44.9
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 1.8e-97 360.5 430 46.0
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 8.8e-97 358.2 438 47.5
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 4.4e-96 355.9 426 47.7
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 5.7e-96 355.5 423 46.8
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 1.7e-95 354.0 485 42.5
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 2.2e-95 353.6 445 44.0
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 2.2e-95 353.6 442 46.2
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 3.7e-95 352.8 468 44.0
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 8.3e-95 351.7 445 43.8
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 1.1e-94 351.3 432 45.4
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.8e-94 350.5 442 45.7
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 3.1e-94 349.7 432 46.1
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 3.1e-94 349.7 433 45.5
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 4.1e-94 349.4 427 47.8
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 9.1e-94 348.2 442 45.5
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 9.1e-94 348.2 427 46.4
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 1.2e-93 347.8 432 44.7
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 1.2e-93 347.8 443 45.6
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 1.6e-93 347.4 442 45.9
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 3.5e-93 346.3 420 46.0
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 4.5e-93 345.9 425 46.1
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 5.9e-93 345.5 427 46.1
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 7.7e-93 345.1 425 46.4
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 1.0e-92 344.7 425 46.1
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.3e-92 344.4 427 45.9
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.7e-92 344.0 428 46.0
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 2.2e-92 343.6 425 47.3
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 3.8e-92 342.8 432 45.8
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 5.0e-92 342.4 428 45.6
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 1.1e-91 341.3 428 45.3
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 1.5e-91 340.9 391 46.5
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 2.5e-91 340.1 451 44.1
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 5.5e-91 339.0 423 44.9
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 1.2e-90 337.8 386 48.7
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 2.1e-90 337.0 457 43.5
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 2.7e-90 336.7 371 48.0
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 4.7e-90 335.9 426 44.6
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 4.7e-90 335.9 424 45.8
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 8.0e-90 335.1 427 45.4
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 8.0e-90 335.1 427 45.0
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 8.0e-90 335.1 422 45.3
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 1.0e-89 334.7 426 45.5
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 3.0e-89 333.2 293 54.9
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 5.2e-89 332.4 425 44.5
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 5.2e-89 332.4 285 56.1
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 1.5e-88 330.9 427 43.8
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 4.4e-88 329.3 430 44.7
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 7.5e-88 328.6 413 45.5
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 6.3e-87 325.5 426 45.3
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 6.3e-87 325.5 423 44.4
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 1.1e-86 324.7 283 58.7
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 2.4e-86 323.6 287 56.4
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 3.1e-86 323.2 440 44.5
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 5.4e-86 322.4 446 44.2
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 1.6e-85 320.9 300 53.7
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.6e-85 320.9 287 55.7
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 2.0e-85 320.5 446 44.2
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 2.0e-85 320.5 299 54.2
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 2.7e-85 320.1 427 43.8
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 4.5e-85 319.3 284 56.3
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 7.7e-85 318.5 447 45.0
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 1.7e-84 317.4 438 43.8
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 2.9e-84 316.6 426 43.0
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 2.9e-84 316.6 428 43.9
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 2.9e-84 316.6 343 50.7
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 3.8e-84 316.2 439 43.3
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 3.8e-84 316.2 425 44.5
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 5.0e-84 315.8 283 54.4
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 5.0e-84 315.8 433 42.0
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 1.5e-83 314.3 431 41.8
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 1.9e-83 313.9 429 41.5
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 5.5e-83 312.4 519 39.3
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 1.2e-82 311.2 436 43.1
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 1.2e-82 311.2 436 43.1
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 1.2e-82 311.2 436 43.6
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 1.6e-82 310.8 270 56.3
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 1.6e-82 310.8 439 43.1
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 2.8e-82 310.1 429 41.5
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 8.0e-82 308.5 313 52.4
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 8.0e-82 308.5 434 43.8
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 8.0e-82 308.5 291 52.9
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 1.0e-81 308.1 300 53.3
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 1.8e-81 307.4 447 42.1
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 3.0e-81 306.6 439 42.8
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 3.0e-81 306.6 439 42.8
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 4.4e-80 302.8 435 41.8
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 1.7e-79 300.8 434 42.2
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 1.7e-79 300.8 286 51.0
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 4.9e-79 299.3 390 45.4
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 8.3e-79 298.5 425 42.1
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 2.7e-77 293.5 433 40.9
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 1.7e-76 290.8 421 39.9
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 1.1e-75 288.1 427 39.8
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 1.1e-75 288.1 286 54.2
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 2.5e-75 287.0 286 53.5
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 3.3e-75 286.6 242 58.3
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 3.6e-74 283.1 242 57.9
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 3.6e-74 283.1 242 57.9
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 3.6e-74 283.1 426 40.1
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 5.8e-72 275.8 441 40.4
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 4.9e-71 272.7 288 49.7
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 5.0e-68 262.7 440 36.6
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 1.2e-66 258.1 337 42.1
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 1.6e-66 257.7 385 39.5
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 1.4e-65 254.6 447 37.6
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 3.0e-60 236.9 283 44.9
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 6.6e-60 235.7 255 46.7
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 5.8e-56 222.6 316 43.7
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 1.6e-53 214.5 211 53.6
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 9.6e-51 205.3 368 38.9
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.6e-50 203.4 310 41.6
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 6.2e-50 202.6 297 38.4
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 4.4e-48 196.4 294 39.1
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 3.2e-46 190.3 186 51.6
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 1.3e-44 184.9 286 37.8
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 2.5e-43 180.6 166 53.0
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 2.6e-40 170.6 278 37.8
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 3.4e-40 170.2 123 63.4
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 1.3e-39 168.3 136 56.6
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 2.9e-39 167.2 369 34.4
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 6.4e-39 166.0 243 37.0
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 5.4e-38 162.9 255 38.4
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 5.4e-38 162.9 243 35.0
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 7.1e-38 162.5 126 59.5
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 1.9e-35 154.5 158 53.8
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 5.3e-33 146.4 89 73.0
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 6.4e-31 139.4 183 40.4
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 2.4e-30 137.5 183 39.9
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.3e-28 131.7 99 63.6
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.3e-26 125.2 80 70.0
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 1.0e-23 115.5 109 53.2
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 1.7e-23 114.8 80 65.0
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 7.9e-21 105.9 186 36.0
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 2.3e-20 104.4 60 75.0
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 3.7e-18 97.1 68 64.7
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 4.8e-18 96.7 266 27.4
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 1.8e-17 94.7 239 33.5
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.4e-17 94.4 59 66.1
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.4e-17 94.4 66 62.1
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 3.4e-16 90.5 120 45.0
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 6.5e-15 86.3 175 30.9
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 4.2e-14 83.6 55 65.5
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.9e-12 77.0 55 63.6
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.9e-12 77.0 55 63.6
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.5e-11 74.3 166 34.3
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.6e-10 71.6 53 52.8
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.2e-10 71.2 52 55.8
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 2.8e-10 70.9 233 29.2
GSVIVG01037069001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.5e-08 65.1 54 55.6
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 7.7e-08 62.8 97 37.1


User provided reference genes

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