Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.2e-68 263.1 138 100.0
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.8e-67 259.2 138 97.8
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 8.5e-54 213.8 137 81.0
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 3.2e-53 211.8 138 78.3
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 5.2e-51 204.5 140 75.0
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 6.7e-51 204.1 137 78.1
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 1.1e-50 203.4 140 77.9
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.3e-49 199.9 140 75.0
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 1.3e-49 199.9 140 75.7
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 1.7e-49 199.5 141 75.9
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.7e-49 199.5 140 75.0
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 1.1e-48 196.8 139 74.8
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 1.8e-48 196.1 140 75.7
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 1.8e-48 196.1 140 75.7
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 4.1e-48 194.9 142 76.8
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 4.1e-48 194.9 140 74.3
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 5.3e-48 194.5 140 74.3
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 5.3e-48 194.5 140 74.3
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 5.3e-48 194.5 139 74.1
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 5.3e-48 194.5 134 78.4
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 9.1e-48 193.7 139 73.4
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 1.2e-47 193.4 140 75.0
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 1.2e-47 193.4 139 71.9
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 2.6e-47 192.2 139 73.4
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 4.5e-47 191.4 139 74.8
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 4.5e-47 191.4 141 75.2
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 4.5e-47 191.4 139 74.1
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 5.9e-47 191.0 140 72.1
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 5.9e-47 191.0 155 69.0
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 5.9e-47 191.0 140 75.0
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 1.0e-46 190.3 140 74.3
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 1.0e-46 190.3 140 73.6
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 1.3e-46 189.9 140 73.6
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 1.3e-46 189.9 139 71.9
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.3e-46 189.9 138 72.5
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 1.3e-46 189.9 141 73.0
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 1.7e-46 189.5 141 73.8
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 1.7e-46 189.5 139 72.7
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 2.2e-46 189.1 140 73.6
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 2.2e-46 189.1 136 73.5
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 2.9e-46 188.7 139 73.4
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 2.9e-46 188.7 139 73.4
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 3.8e-46 188.3 140 73.6
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 3.8e-46 188.3 141 73.8
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 3.8e-46 188.3 139 72.7
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 5.0e-46 188.0 137 76.6
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 5.0e-46 188.0 140 73.6
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 5.0e-46 188.0 140 73.6
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 6.5e-46 187.6 141 73.0
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 6.5e-46 187.6 140 72.9
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 8.5e-46 187.2 139 73.4
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 1.1e-45 186.8 140 72.9
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 1.5e-45 186.4 142 74.6
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 1.5e-45 186.4 136 72.1
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 1.9e-45 186.0 141 75.2
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 2.5e-45 185.7 139 72.7
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 2.5e-45 185.7 136 72.8
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 3.2e-45 185.3 140 70.7
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 4.2e-45 184.9 139 71.9
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 4.2e-45 184.9 140 72.1
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 5.5e-45 184.5 136 69.1
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 5.5e-45 184.5 139 74.8
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 5.5e-45 184.5 138 73.9
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 5.5e-45 184.5 140 72.1
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 5.5e-45 184.5 136 71.3
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 7.2e-45 184.1 140 70.7
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 7.2e-45 184.1 138 71.0
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 7.2e-45 184.1 139 73.4
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 9.4e-45 183.7 139 71.2
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 9.4e-45 183.7 143 73.4
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 9.4e-45 183.7 143 73.4
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.2e-44 183.3 140 70.7
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.2e-44 183.3 140 70.7
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 1.6e-44 183.0 134 73.1
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.6e-44 183.0 140 71.4
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 2.7e-44 182.2 137 70.8
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 3.6e-44 181.8 141 70.9
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 4.7e-44 181.4 139 71.2
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 8.0e-44 180.6 138 69.6
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 1.4e-43 179.9 136 71.3
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 1.8e-43 179.5 142 67.6
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 2.3e-43 179.1 140 70.7
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 3.0e-43 178.7 140 67.9
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 4.0e-43 178.3 140 70.0
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 4.0e-43 178.3 141 68.8
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 5.2e-43 177.9 131 72.5
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 8.8e-43 177.2 143 70.6
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 1.2e-42 176.8 133 70.7
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 1.5e-42 176.4 140 70.0
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 2.6e-42 175.6 137 73.7
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 2.6e-42 175.6 135 69.6
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 3.4e-42 175.3 141 70.9
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 5.7e-42 174.5 140 66.4
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 7.5e-42 174.1 141 69.5
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 7.5e-42 174.1 141 69.5
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 9.8e-42 173.7 140 70.0
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.7e-41 172.9 140 65.7
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 2.2e-41 172.6 136 67.6
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 2.2e-41 172.6 136 69.1
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 2.8e-41 172.2 142 68.3
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 2.8e-41 172.2 142 68.3
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 3.7e-41 171.8 140 69.3
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 3.7e-41 171.8 142 68.3
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 3.7e-41 171.8 140 69.3
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 3.7e-41 171.8 140 69.3
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 3.7e-41 171.8 140 69.3
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 3.7e-41 171.8 140 69.3
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 3.7e-41 171.8 121 72.7
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 4.8e-41 171.4 139 68.3
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 6.3e-41 171.0 132 68.9
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 8.3e-41 170.6 141 68.1
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 1.1e-40 170.2 144 67.4
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 1.4e-40 169.9 141 68.8
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 1.4e-40 169.9 141 68.8
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 1.8e-40 169.5 132 67.4
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 2.4e-40 169.1 142 68.3
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 3.1e-40 168.7 141 68.1
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 3.1e-40 168.7 141 68.1
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 3.1e-40 168.7 141 68.1
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 3.1e-40 168.7 139 66.9
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 3.1e-40 168.7 139 66.9
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 4.1e-40 168.3 142 67.6
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 4.1e-40 168.3 142 67.6
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 4.1e-40 168.3 141 68.1
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 5.4e-40 167.9 144 66.0
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 5.4e-40 167.9 142 66.9
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 7.0e-40 167.5 141 67.4
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 9.1e-40 167.2 142 66.9
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 9.1e-40 167.2 142 66.9
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 9.1e-40 167.2 142 66.2
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 3.5e-39 165.2 141 66.7
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 3.5e-39 165.2 139 66.9
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 7.7e-39 164.1 141 66.0
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 1.3e-38 163.3 140 69.3
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.7e-38 162.9 138 60.9
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 1.5e-37 159.8 147 63.9
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 5.5e-37 157.9 109 75.2
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 1.6e-36 156.4 138 63.8
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 3.6e-36 155.2 138 62.3
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 8.0e-36 154.1 133 65.4
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 2.3e-35 152.5 133 63.9
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 5.7e-34 147.9 140 65.7
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 4.9e-33 144.8 135 62.2
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 2.4e-32 142.5 140 57.1
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 5.4e-32 141.4 141 58.9
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 1.2e-31 140.2 89 78.7
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 5.0e-30 134.8 154 55.8
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 6.6e-30 134.4 147 54.4
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 8.6e-30 134.0 139 54.7
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 8.6e-30 134.0 155 53.5
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.9e-29 132.9 150 55.3
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 3.3e-29 132.1 138 55.1
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 4.2e-29 131.7 139 57.6
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.2e-28 130.2 114 64.9
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 2.0e-26 122.9 134 56.7
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 3.2e-24 115.5 89 69.7
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 4.1e-24 115.2 67 79.1
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 5.9e-23 111.3 89 69.7
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 2.3e-22 109.4 89 67.4
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 5.2e-19 98.2 52 86.5
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 8.9e-19 97.4 143 43.4
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 7.5e-18 94.4 72 68.1
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 8.3e-17 90.9 136 44.9
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 3.3e-13 79.0 80 62.5
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 7.3e-13 77.8 50 76.0


User provided reference genes

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