Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0886 Ceratophyllum demersum HOM05D002884 ORTHO05D003178 1.2e-66 256.5 141 100.0
CDE12G0835 Ceratophyllum demersum HOM05D002884 ORTHO05D003178 2.4e-43 179.1 112 83.0
TAR375G0217 Trochodendron aralioides HOM05D002884 ORTHO05D003178 7.2e-24 114.4 122 53.3
TAR636G2592 Trochodendron aralioides HOM05D002884 ORTHO05D003178 1.6e-23 113.2 121 53.7
TAR629G3349 Trochodendron aralioides HOM05D002884 ORTHO05D003178 4.6e-23 111.7 122 54.9
TAR629G1766 Trochodendron aralioides HOM05D002884 ORTHO05D003178 1.8e-22 109.8 122 54.1
vmacro00201 Vaccinium macrocarpon HOM05D002884 ORTHO05D003178 5.1e-22 108.2 121 52.9
Aqoxy7G00426 Aquilegia oxysepala HOM05D002884 ORTHO05D003178 6.7e-22 107.8 124 53.2
Hma1.2p1_0514F.1_g170040 Hydrangea macrophylla HOM05D002884 ORTHO05D003178 3.3e-21 105.5 126 53.2
CSS0002116 Camellia sinensis var. sinensis HOM05D002884 ORTHO05D003178 4.4e-21 105.1 120 52.5
Prupe.5G091800 Prunus persica HOM05D002884 ORTHO05D003178 4.4e-21 105.1 122 49.2
Dinv37683 Davidia involucrata HOM05D002884 ORTHO05D003178 5.7e-21 104.8 120 51.7
Gohir.A12G225400 Gossypium hirsutum HOM05D002884 ORTHO05D003178 1.3e-20 103.6 121 49.6
Gohir.D12G228000 Gossypium hirsutum HOM05D002884 ORTHO05D003178 1.3e-20 103.6 121 49.6
PSO782G3187 Papaver somniferum HOM05D002884 ORTHO05D003178 1.7e-20 103.2 123 51.2
Ciclev10019482m.g Citrus clementina HOM05D002884 ORTHO05D003178 2.2e-20 102.8 125 48.8
Eucgr.E00535 Eucalyptus grandis HOM05D002884 ORTHO05D003178 2.8e-20 102.4 118 48.3
Gorai.008G244000 Gossypium raimondii HOM05D002884 ORTHO05D003178 2.8e-20 102.4 121 48.8
Nitab4.5_0002234g0060 Nicotiana tabacum HOM05D002884 ORTHO05D003178 2.8e-20 102.4 120 51.7
PSO478G0346 Papaver somniferum HOM05D002884 ORTHO05D003178 3.7e-20 102.1 123 51.2
Duzib205G1004 Durio zibethinus HOM05D002884 ORTHO05D003178 6.3e-20 101.3 120 48.3
Nitab4.5_0002853g0040 Nicotiana tabacum HOM05D002884 ORTHO05D003178 6.3e-20 101.3 120 50.8
Cc08_g14060 Coffea canephora HOM05D002884 ORTHO05D003178 1.1e-19 100.5 120 48.3
Cpa.g.sc74.81 Carica papaya HOM05D002884 ORTHO05D003178 1.8e-19 99.8 120 49.2
GSVIVG01019815001 Vitis vinifera HOM05D002884 ORTHO05D003178 1.8e-19 99.8 124 49.2
CDE09G0350 Ceratophyllum demersum HOM05D002884 ORTHO05D003178 2.4e-19 99.4 119 47.1
PGSC0003DMG400003048 Solanum tuberosum HOM05D002884 ORTHO05D003178 2.4e-19 99.4 120 49.2
HanXRQChr13g0416781 Helianthus annuus HOM05D002884 ORTHO05D003178 3.1e-19 99.0 120 50.0
Solyc08g080410.3 Solanum lycopersicum HOM05D002884 ORTHO05D003178 3.1e-19 99.0 120 51.7
Atru.chr9.1548 Acer truncatum HOM05D002884 ORTHO05D003178 5.3e-19 98.2 124 47.6
Nn6g34230 Nelumbo nucifera HOM05D002884 ORTHO05D003178 6.9e-19 97.8 121 49.6
Sopen08g028740 Solanum pennellii HOM05D002884 ORTHO05D003178 6.9e-19 97.8 120 51.7
Oeu011663.1 Olea europaea HOM05D002884 ORTHO05D003178 9.1e-19 97.4 119 47.1
Thecc.03G272100 Theobroma cacao HOM05D002884 ORTHO05D003178 9.1e-19 97.4 120 48.3
Lsat_1_v5_gn_6_87540 Lactuca sativa HOM05D002884 ORTHO05D003178 1.2e-18 97.1 122 51.6
Potri.001G109500 Populus trichocarpa HOM05D002884 ORTHO05D003178 1.2e-18 97.1 127 49.6
Peaxi162Scf00714g00057 Petunia axillaris HOM05D002884 ORTHO05D003178 1.5e-18 96.7 120 46.7
CDE11G0083 Ceratophyllum demersum HOM05D002884 ORTHO05D003178 2.0e-18 96.3 119 47.9
Oeu031597.1 Olea europaea HOM05D002884 ORTHO05D003178 2.6e-18 95.9 122 48.4
Dinv39004 Davidia involucrata HOM05D002884 ORTHO05D003178 3.4e-18 95.5 120 48.3
FvH4_5g01560 Fragaria vesca HOM05D002884 ORTHO05D003178 3.4e-18 95.5 121 43.8
FAN08G3344 Fragaria x ananassa HOM05D002884 ORTHO05D003178 3.4e-18 95.5 121 43.8
FAN18G2326 Fragaria x ananassa HOM05D002884 ORTHO05D003178 3.4e-18 95.5 121 43.8
Manes.01G066200 Manihot esculenta HOM05D002884 ORTHO05D003178 3.4e-18 95.5 120 49.2
Sabra01G0082800 Salix brachista HOM05D002884 ORTHO05D003178 4.5e-18 95.1 143 44.8
COL.COLO4_05264 Corchorus olitorius HOM05D002884 ORTHO05D003178 5.9e-18 94.7 120 46.7
MD04G1066700 Malus domestica HOM05D002884 ORTHO05D003178 5.9e-18 94.7 122 46.7
CANSAT21G2344 Cannabis sativa HOM05D002884 ORTHO05D003178 7.7e-18 94.4 121 47.1
FAN04G2772 Fragaria x ananassa HOM05D002884 ORTHO05D003178 7.7e-18 94.4 121 43.8
FAN08G2255 Fragaria x ananassa HOM05D002884 ORTHO05D003178 7.7e-18 94.4 121 43.8
QL12p017410 Quercus lobata HOM05D002884 ORTHO05D003178 7.7e-18 94.4 123 45.5
Duzib068G1440 Durio zibethinus HOM05D002884 ORTHO05D003178 1.0e-17 94.0 122 45.1
Lj8A238T60 Lonicera japonica HOM05D002884 ORTHO05D003178 1.0e-17 94.0 119 45.4
Actinidia14527 Actinidia chinensis HOM05D002884 ORTHO05D003178 1.7e-17 93.2 123 48.8
ClCG00G001160 Citrullus lanatus HOM05D002884 ORTHO05D003178 2.2e-17 92.8 123 48.0
ClCG10G003770 Citrullus lanatus HOM05D002884 ORTHO05D003178 2.2e-17 92.8 123 48.0
ClCG10G003780 Citrullus lanatus HOM05D002884 ORTHO05D003178 2.2e-17 92.8 123 48.0
FAN13G0317 Fragaria x ananassa HOM05D002884 ORTHO05D003178 2.2e-17 92.8 121 43.0
THA.LOC104814310 Tarenaya hassleriana HOM05D002884 ORTHO05D003178 2.2e-17 92.8 119 46.2
CSS0004594 Camellia sinensis var. sinensis HOM05D002884 ORTHO05D003178 2.9e-17 92.4 120 46.7
CsaV3_3G003750 Cucumis sativus L. HOM05D002884 ORTHO05D003178 2.9e-17 92.4 125 48.0
Potri.003G122300 Populus trichocarpa HOM05D002884 ORTHO05D003178 2.9e-17 92.4 127 48.8
MD06G1073600 Malus domestica HOM05D002884 ORTHO05D003178 3.8e-17 92.0 122 45.9
RcHm_v2.0_Chr7g0199121 Rosa chinensis HOM05D002884 ORTHO05D003178 5.0e-17 91.7 125 44.0
Hma1.2p1_0371F.1_g138100 Hydrangea macrophylla HOM05D002884 ORTHO05D003178 8.5e-17 90.9 120 47.5
Glyma.17G131100 Glycine max HOM05D002884 ORTHO05D003178 1.1e-16 90.5 123 46.3
Glyma.05G049200 Glycine max HOM05D002884 ORTHO05D003178 1.4e-16 90.1 124 46.0
Nn1g01376 Nelumbo nucifera HOM05D002884 ORTHO05D003178 2.5e-16 89.4 122 46.7
Sabra03G0086200 Salix brachista HOM05D002884 ORTHO05D003178 2.5e-16 89.4 126 47.6
Sc01g0008750 Simmondsia chinensis HOM05D002884 ORTHO05D003178 2.5e-16 89.4 129 45.0
Lalb_Chr16g0377211 Lupinus albus HOM05D002884 ORTHO05D003178 3.2e-16 89.0 125 47.2
PGR042G2076 Punica granatum HOM05D002884 ORTHO05D003178 3.2e-16 89.0 119 45.4
CAN.G981.24 Capsicum annuum HOM05D002884 ORTHO05D003178 4.2e-16 88.6 120 45.0
Ca_20250_v3 Cicer arietinum L. HOM05D002884 ORTHO05D003178 4.2e-16 88.6 121 46.3
DCAR_004672 Daucus carota HOM05D002884 ORTHO05D003178 4.2e-16 88.6 130 43.1
Lalb_Chr09g0321151 Lupinus albus HOM05D002884 ORTHO05D003178 4.2e-16 88.6 125 48.8
Actinidia02037 Actinidia chinensis HOM05D002884 ORTHO05D003178 5.5e-16 88.2 91 54.9
arahy.Tifrunner.gnm1.ann1.00WUVK Arachis hypogaea HOM05D002884 ORTHO05D003178 5.5e-16 88.2 125 47.2
arahy.Tifrunner.gnm1.ann1.2WQF85 Arachis hypogaea HOM05D002884 ORTHO05D003178 5.5e-16 88.2 125 47.2
ECA240G2117 Erigeron canadensis HOM05D002884 ORTHO05D003178 5.5e-16 88.2 121 46.3
Sed0001920 Sechium edule HOM05D002884 ORTHO05D003178 5.5e-16 88.2 125 48.0
TPR.G19228 Trifolium pratense HOM05D002884 ORTHO05D003178 5.5e-16 88.2 121 47.9
EL10Ac5g12735 Beta vulgaris HOM05D002884 ORTHO05D003178 1.2e-15 87.0 128 46.9
SGA_v2.0_scaffold144G35971 Striga asiatica HOM05D002884 ORTHO05D003178 1.2e-15 87.0 120 46.7
Oeu048784.1 Olea europaea HOM05D002884 ORTHO05D003178 2.1e-15 86.3 120 44.2
Medtr4g102810 Medicago truncatula HOM05D002884 ORTHO05D003178 2.7e-15 85.9 128 45.3
VMungo1215G1054 Vigna mungo HOM05D002884 ORTHO05D003178 3.6e-15 85.5 127 45.7
Hund11525 Selenicereus undatus HOM05D002884 ORTHO05D003178 4.7e-15 85.1 131 44.3
Lalb_Chr05g0225031 Lupinus albus HOM05D002884 ORTHO05D003178 6.1e-15 84.7 121 45.5
Psat4g066960 Pisum sativum HOM05D002884 ORTHO05D003178 6.1e-15 84.7 121 45.5
Haze_08941 Corylus avellana HOM05D002884 ORTHO05D003178 7.9e-15 84.3 124 43.5
Lj2g0016961 Lotus japonicus HOM05D002884 ORTHO05D003178 7.9e-15 84.3 127 44.9
MBI12_g29747_MAGBIO Magnolia biondii HOM05D002884 ORTHO05D003178 7.9e-15 84.3 95 54.7
Migut.E01291 Erythranthe guttata HOM05D002884 ORTHO05D003178 1.0e-14 84.0 121 46.3
TWI60G1702 Tripterygium wilfordii HOM05D002884 ORTHO05D003178 1.4e-14 83.6 121 46.3
Phvul.003G212000 Phaseolus vulgaris HOM05D002884 ORTHO05D003178 3.9e-14 82.0 127 44.9
Sp6g05690 Schrenkiella parvula HOM05D002884 ORTHO05D003178 6.7e-14 81.3 122 42.6
THA.LOC104806375 Tarenaya hassleriana HOM05D002884 ORTHO05D003178 6.7e-14 81.3 118 44.1
MSTRG.12015 Avicennia marina HOM05D002884 ORTHO05D003178 8.8e-14 80.9 122 45.1
DCAR_006758 Daucus carota HOM05D002884 ORTHO05D003178 1.1e-13 80.5 95 54.7
Oeu059065.2 Olea europaea HOM05D002884 ORTHO05D003178 1.1e-13 80.5 119 42.0
ECA246G0929 Erigeron canadensis HOM05D003547 ORTHO05D004236 1.5e-13 80.1 90 52.2
AL6G46330 Arabidopsis lyrata HOM05D002884 ORTHO05D003178 2.6e-13 79.3 120 43.3
unitig_26.g9695 Utricularia gibba HOM05D002884 ORTHO05D003178 2.6e-13 79.3 123 42.3
Lalb_Chr16g0389741 Lupinus albus HOM05D002884 ORTHO05D003178 3.3e-13 79.0 125 42.4
CiPaw.11G140600 Carya illinoinensis HOM05D002884 ORTHO05D003178 4.4e-13 78.6 123 41.5
Cfa012110 Carpinus fangiana HOM05D002884 ORTHO05D003178 5.7e-13 78.2 124 41.1
ATR0757G204 Amborella trichopoda HOM05D002884 ORTHO05D003178 7.4e-13 77.8 126 42.9
AT4G11740 Arabidopsis thaliana HOM05D002884 ORTHO05D003178 7.4e-13 77.8 120 42.5
Carub.0006s3083 Capsella rubella HOM05D002884 ORTHO05D003178 7.4e-13 77.8 121 43.0
Migut.A00926 Erythranthe guttata HOM05D002884 ORTHO05D003178 9.7e-13 77.4 95 48.4
Thhalv10028549m.g Eutrema salsugineum HOM05D002884 ORTHO05D003178 9.7e-13 77.4 122 42.6
BcaNung06111 Brassica carinata HOM05D002884 ORTHO05D003178 1.3e-12 77.0 120 42.5
C09p34700 Brassica napus HOM05D002884 ORTHO05D003178 1.3e-12 77.0 120 42.5
BolC9t56316H Brassica oleracea HOM05D002884 ORTHO05D003178 1.3e-12 77.0 120 42.5
Gohir.A09G193001 Gossypium hirsutum HOM05D002884 ORTHO05D003178 1.3e-12 77.0 118 40.7
SGA_v2.0_scaffold385G50454 Striga asiatica HOM05D002884 ORTHO05D003178 1.3e-12 77.0 121 42.1
BcaB01g01676 Brassica carinata HOM05D002884 ORTHO05D003178 1.7e-12 76.6 120 42.5
AUR62017287 Chenopodium quinoa HOM05D002884 ORTHO05D003178 2.2e-12 76.3 128 43.8
Gohir.D09G187200 Gossypium hirsutum HOM05D002884 ORTHO05D003178 2.2e-12 76.3 117 40.2
Gorai.006G210000 Gossypium raimondii HOM05D002884 ORTHO05D003178 2.2e-12 76.3 117 40.2
Lj2A193T55 Lonicera japonica HOM05D002884 ORTHO05D003178 2.8e-12 75.9 120 40.0
RcHm_v2.0_Chr1g0352561 Rosa chinensis HOM05D002884 ORTHO05D003178 4.8e-12 75.1 121 38.8
FvH4_7g13300 Fragaria vesca HOM05D002884 ORTHO05D003178 8.2e-12 74.3 121 38.0
FAN06G1792 Fragaria x ananassa HOM05D002884 ORTHO05D003178 8.2e-12 74.3 121 38.0
Zm00001eb198600 Zea mays HOM05D002884 ORTHO05D003178 8.2e-12 74.3 124 41.9
AUR62010645 Chenopodium quinoa HOM05D002884 ORTHO05D003178 1.4e-11 73.6 95 48.4
Rhsim11G0003600 Rhododendron simsii HOM05D002884 ORTHO05D003178 1.4e-11 73.6 179 34.1
SalBow6G0746 Salvia bowleyana HOM05D002884 ORTHO05D003178 1.4e-11 73.6 76 52.6
TWI81G0934 Tripterygium wilfordii HOM05D002884 ORTHO05D003178 1.4e-11 73.6 126 40.5
BraA09t38307Z Brassica rapa HOM05D002884 ORTHO05D003178 1.8e-11 73.2 120 41.7
Os09g0525600 Oryza sativa ssp. japonica HOM05D002884 ORTHO05D003178 1.8e-11 73.2 126 41.3
FAN03G1671 Fragaria x ananassa HOM05D002884 ORTHO05D003178 4.1e-11 72.0 122 36.9
Sed0021874 Sechium edule HOM05D002884 ORTHO05D003178 4.1e-11 72.0 123 40.7
SEGI_16894 Sequoiadendron giganteum HOM05D002884 ORTHO05D003178 4.1e-11 72.0 119 42.9
FAN01G2025 Fragaria x ananassa HOM05D002884 ORTHO05D003178 1.2e-10 70.5 121 37.2
QL08p050399 Quercus lobata HOM05D002884 ORTHO05D003178 1.6e-10 70.1 122 38.5
Zm00001eb319030 Zea mays HOM05D002884 ORTHO05D003178 2.0e-10 69.7 127 39.4
Aa31LG9G10660 Aethionema arabicum HOM05D005348 ORTHO05D006635 2.6e-10 69.3 137 38.0
Zm00001eb103170 Zea mays HOM05D002884 ORTHO05D003178 3.5e-10 68.9 126 38.1
QL08p050362 Quercus lobata HOM05D002884 ORTHO05D003178 7.7e-10 67.8 120 38.3
AL7G30460 Arabidopsis lyrata HOM05D002884 ORTHO05D003178 1.0e-09 67.4 119 37.8
Hund11524 Selenicereus undatus HOM05D002884 ORTHO05D003178 1.0e-09 67.4 140 38.6
GSVIVG01019816001 Vitis vinifera HOM05D002884 ORTHO05D003178 1.0e-09 67.4 92 44.6
FAN06G1900 Fragaria x ananassa HOM05D002884 ORTHO05D003178 2.2e-09 66.2 134 35.1
Os08g0546400 Oryza sativa ssp. japonica HOM05D002884 ORTHO05D003178 2.9e-09 65.9 120 40.0
A09p27380 Brassica napus HOM05D002884 ORTHO05D003178 3.8e-09 65.5 120 40.8
Ciclev10019779m.g Citrus clementina HOM05D002884 ORTHO05D003178 5.0e-09 65.1 97 41.2
MELO3C014057.2 Cucumis melo HOM05D002884 ORTHO05D003178 6.5e-09 64.7 94 45.7
Medtr8g432670 Medicago truncatula HOM05D002884 ORTHO05D003178 8.5e-09 64.3 96 40.6
PGR031G1229 Punica granatum HOM05D002884 ORTHO05D003178 8.5e-09 64.3 114 36.8
Lsat_1_v5_gn_3_5420 Lactuca sativa HOM05D002884 ORTHO05D003178 1.5e-08 63.5 81 51.9
Lsat_1_v5_gn_6_49340 Lactuca sativa HOM05D002884 ORTHO05D003178 1.5e-08 63.5 94 43.6
AT4G23040 Arabidopsis thaliana HOM05D002884 ORTHO05D003178 3.2e-08 62.4 118 36.4
Cpa.g.sc18.220 Carica papaya HOM05D002884 ORTHO05D003178 4.2e-08 62.0 93 41.9
Prupe.2G156600 Prunus persica HOM05D002884 ORTHO05D003178 5.5e-08 61.6 137 32.8
BcaB05g23812 Brassica carinata HOM05D002884 ORTHO05D003178 7.2e-08 61.2 84 41.7
Lalb_Chr10g0097461 Lupinus albus HOM05D002884 ORTHO05D003178 7.2e-08 61.2 93 43.0
SHI09624 Sapria himalayana HOM05D002884 ORTHO05D003178 7.2e-08 61.2 98 42.9
Potri.014G075600 Populus trichocarpa HOM05D002884 ORTHO05D003178 1.2e-07 60.5 93 40.9
Sabra14G0056200 Salix brachista HOM05D002884 ORTHO05D003178 1.2e-07 60.5 93 40.9
MD01G1050500 Malus domestica HOM05D002884 ORTHO05D003178 2.7e-07 59.3 133 33.8
CANSAT56G1884 Cannabis sativa HOM05D002884 ORTHO05D003178 3.6e-07 58.9 108 38.0
AT4G00752 Arabidopsis thaliana HOM05D002884 ORTHO05D003178 4.7e-07 58.5 104 35.6
Lsat_1_v5_gn_5_13461 Lactuca sativa HOM05D002884 ORTHO05D003828 8.0e-07 57.8 95 43.2
MBI04_g00304_MAGBIO Magnolia biondii HOM05D002884 ORTHO05D003178 8.0e-07 57.8 62 53.2
Psat4g152000 Pisum sativum HOM05D002884 ORTHO05D003178 8.0e-07 57.8 98 38.8
ClCG10G003790 Citrullus lanatus HOM05D002884 ORTHO05D003178 1.0e-06 57.4 49 61.2
AL6G52710 Arabidopsis lyrata HOM05D002884 ORTHO05D003178 1.4e-06 57.0 104 34.6
Carub.0007s1823 Capsella rubella HOM05D002884 ORTHO05D003178 1.8e-06 56.6 69 44.9
Sed0012052 Sechium edule HOM05D002884 ORTHO05D003178 1.8e-06 56.6 92 38.0
TWI14G0634 Tripterygium wilfordii HOM05D002884 ORTHO05D003178 2.3e-06 56.2 92 43.5
ClCG05G001840 Citrullus lanatus HOM05D002884 ORTHO05D003178 3.0e-06 55.8 92 37.0
BcaC03g16334 Brassica carinata HOM05D002884 ORTHO05D003178 4.0e-06 55.5 78 42.3
C02p41530 Brassica napus HOM05D002884 ORTHO05D003178 4.0e-06 55.5 78 42.3
BolC2t10170H Brassica oleracea HOM05D002884 ORTHO05D003178 4.0e-06 55.5 78 42.3
CsaV3_3G009230 Cucumis sativus L. HOM05D002884 ORTHO05D003178 4.0e-06 55.5 92 38.0
Thhalv10028647m.g Eutrema salsugineum HOM05D002884 ORTHO05D003178 4.0e-06 55.5 99 36.4
RcHm_v2.0_Chr4g0427171 Rosa chinensis HOM05D002884 ORTHO05D003178 4.0e-06 55.5 110 38.2
Rhsim07G0094100 Rhododendron simsii HOM05D002884 ORTHO05D003178 5.2e-06 55.1 117 36.8
HanXRQChr17g0533751 Helianthus annuus HOM05D002884 ORTHO05D003178 6.7e-06 54.7 68 48.5
Ca_23746_v3 Cicer arietinum L. HOM05D002884 ORTHO05D003178 8.8e-06 54.3 128 35.9
MELO3C006143.2 Cucumis melo HOM05D002884 ORTHO05D003178 8.8e-06 54.3 92 38.0
Lj3g0008628 Lotus japonicus HOM05D002884 ORTHO05D003178 8.8e-06 54.3 131 34.4


User provided reference genes

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