Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 0.0e+00 1567.4 820 100.0
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 0.0e+00 1286.6 818 85.6
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 2.8e-144 516.9 843 43.7
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 4.8e-144 516.2 882 44.7
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 9.6e-137 491.9 873 43.9
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 8.2e-128 462.2 883 42.5
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 1.1e-127 461.8 889 42.2
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 9.3e-124 448.7 822 41.8
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 3.0e-122 443.7 861 41.7
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 2.5e-121 440.7 876 41.6
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 1.5e-118 431.4 850 41.1
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 2.6e-118 430.6 863 39.5
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 5.9e-118 429.5 863 40.1
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 2.9e-117 427.2 848 40.3
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 3.8e-117 426.8 925 38.4
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 5.0e-117 426.4 873 40.7
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 8.5e-117 425.6 873 40.8
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 2.5e-116 424.1 853 41.0
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 4.2e-116 423.3 866 38.8
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 6.1e-115 419.5 859 40.3
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 4.3e-113 413.3 865 40.3
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 4.3e-113 413.3 875 38.5
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 1.7e-112 411.4 874 38.9
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.2e-112 411.0 851 39.4
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 6.3e-112 409.5 852 39.2
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 8.2e-112 409.1 857 40.0
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 1.4e-111 408.3 848 40.3
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 4.1e-111 406.8 854 39.0
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 5.3e-111 406.4 845 38.8
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.2e-110 405.2 847 39.7
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 2.0e-110 404.4 856 39.3
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 2.6e-110 404.1 854 39.0
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 4.5e-110 403.3 867 38.8
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 7.7e-110 402.5 853 37.5
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.0e-109 402.1 854 39.5
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 6.5e-109 399.4 860 38.4
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 1.1e-108 398.7 847 40.3
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 1.4e-108 398.3 855 39.3
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 1.2e-107 395.2 836 39.8
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 4.7e-107 393.3 849 39.0
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 7.9e-107 392.5 855 37.4
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 3.9e-106 390.2 854 37.2
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 5.1e-106 389.8 829 38.6
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 3.3e-105 387.1 852 38.6
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 9.7e-105 385.6 864 35.4
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.8e-104 384.0 863 37.5
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 4.1e-103 380.2 866 38.5
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.1e-103 380.2 857 35.9
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 9.1e-103 379.0 864 37.6
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 1.2e-102 378.6 913 36.4
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.5e-102 378.3 859 36.9
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 2.0e-102 377.9 846 38.4
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.0e-102 377.9 864 37.3
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 2.0e-102 377.9 839 37.1
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 4.5e-102 376.7 851 37.6
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.9e-102 376.3 853 35.6
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 7.7e-102 375.9 855 36.7
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 1.0e-101 375.6 849 37.3
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 6.5e-101 372.9 851 38.3
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 1.4e-100 371.7 804 36.9
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 2.5e-100 370.9 892 37.2
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 3.2e-100 370.5 855 37.8
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 4.2e-100 370.2 860 38.8
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 4.2e-100 370.2 863 37.9
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 7.2e-100 369.4 804 37.8
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 2.1e-99 367.9 856 38.1
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 4.7e-99 366.7 847 37.7
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 1.4e-98 365.2 869 37.7
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 1.4e-98 365.2 801 37.5
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 1.8e-98 364.8 862 37.7
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 3.0e-98 364.0 676 42.0
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 6.7e-98 362.8 850 37.2
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 8.8e-98 362.5 881 37.6
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 8.8e-98 362.5 825 36.4
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 1.3e-96 358.6 843 36.2
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 1.7e-96 358.2 850 36.2
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 6.3e-96 356.3 762 38.6
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 1.1e-95 355.5 881 37.2
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 1.8e-95 354.8 847 36.2
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 2.4e-95 354.4 894 36.8
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 7.0e-95 352.8 826 36.1
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 4.5e-94 350.1 792 36.9
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 1.3e-93 348.6 876 35.7
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 2.9e-93 347.4 843 36.7
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 1.1e-92 345.5 794 36.4
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 3.2e-92 344.0 853 35.5
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 4.2e-92 343.6 864 36.5
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 5.5e-92 343.2 832 36.9
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 1.2e-91 342.0 841 36.7
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.6e-91 341.7 686 38.6
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.8e-90 338.2 842 34.2
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 5.7e-89 333.2 841 34.4
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 7.5e-89 332.8 914 33.8
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 2.8e-88 330.9 697 40.5
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.7e-88 330.5 854 36.7
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 4.1e-87 327.0 821 35.1
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 9.1e-87 325.9 854 34.1
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 2.0e-86 324.7 849 36.0
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 2.7e-86 324.3 878 34.9
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.5e-86 323.9 816 35.8
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.0e-85 322.4 872 34.6
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 1.9e-84 318.2 857 35.5
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 2.5e-84 317.8 829 36.7
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 2.7e-83 314.3 891 33.6
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 4.7e-83 313.5 577 40.0
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 8.0e-83 312.8 854 33.8
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.0e-82 312.4 814 34.5
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 2.3e-82 311.2 857 34.8
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 3.0e-82 310.8 860 35.9
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 8.8e-82 309.3 693 37.1
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 5.7e-81 306.6 827 36.6
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 5.7e-81 306.6 919 32.9
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 1.3e-80 305.4 380 49.2
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 2.2e-80 304.7 814 36.2
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 3.7e-80 303.9 859 35.9
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 8.3e-80 302.8 852 35.3
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 2.9e-77 294.3 725 35.9
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 3.8e-77 293.9 857 34.5
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 6.6e-77 293.1 721 35.6
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 1.1e-76 292.4 788 34.6
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 1.5e-76 292.0 855 34.3
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 7.2e-76 289.7 834 34.1
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 9.5e-76 289.3 676 37.6
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 2.8e-75 287.7 759 34.4
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.4e-74 285.4 851 34.2
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 2.3e-74 284.6 730 35.5
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 8.9e-74 282.7 730 35.6
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 1.5e-73 282.0 718 35.0
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 1.5e-73 282.0 718 35.0
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 2.0e-73 281.6 853 34.5
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 2.0e-73 281.6 730 35.5
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 2.6e-73 281.2 856 33.3
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 5.7e-73 280.0 846 35.0
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 2.5e-68 264.6 616 38.1
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 8.0e-67 259.6 713 33.8
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 8.9e-66 256.1 863 32.4
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 3.7e-64 250.8 784 31.4
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 2.7e-62 244.6 573 35.8
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.5e-60 238.0 677 35.6
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 2.5e-60 238.0 573 35.1
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.5e-57 228.8 635 31.8
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 3.4e-57 227.6 591 34.7
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.4e-55 222.2 944 28.3
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 4.1e-55 220.7 403 39.7
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 3.5e-54 217.6 820 31.5
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 1.7e-53 215.3 911 29.0
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.7e-53 215.3 622 31.2
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.9e-53 214.2 625 32.2
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.3e-44 184.5 509 33.0
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 2.8e-43 181.4 493 33.3
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.0e-41 175.3 493 34.5
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 9.9e-41 172.9 384 37.2
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 1.5e-36 159.1 207 48.8
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 2.5e-36 158.3 666 29.0
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 1.7e-32 145.6 356 31.7
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 7.1e-31 140.2 187 48.1
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 1.7e-29 135.6 288 39.2
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.6e-27 129.0 106 62.3
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.2e-27 127.1 344 35.8
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.3e-24 119.4 179 43.0
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 2.4e-23 115.2 207 42.0
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 2.7e-22 111.7 443 27.1
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.3e-21 108.6 248 37.5
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.0e-21 108.2 334 31.1
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 5.1e-21 107.5 113 50.4
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 2.1e-19 102.1 286 31.5
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 2.0e-17 95.5 135 42.2
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 7.1e-15 87.0 80 46.2
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.7e-11 74.7 64 62.5
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 5.3e-10 70.9 41 70.7
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 9.0e-10 70.1 162 39.5
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 1.5e-09 69.3 76 48.7
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.7e-08 65.9 62 51.6
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 8.4e-08 63.5 192 31.2
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 3.2e-07 61.6 89 40.4
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 1.6e-06 59.3 213 34.7
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.7e-06 58.5 117 38.5


User provided reference genes

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