Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 1.5e-80 302.8 144 100.0
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 1.8e-62 242.7 144 77.1
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 3.0e-62 241.9 146 77.4
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 3.0e-62 241.9 144 77.1
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 5.2e-62 241.1 144 79.2
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 1.2e-61 240.0 144 79.2
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 9.8e-61 236.9 148 77.0
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.2e-60 235.7 137 80.3
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 2.8e-60 235.3 144 77.1
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 2.8e-60 235.3 144 77.1
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 4.9e-60 234.6 146 77.4
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 6.3e-60 234.2 145 76.6
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 8.3e-60 233.8 146 78.8
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 3.1e-59 231.9 140 78.6
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 5.4e-59 231.1 146 74.7
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 5.4e-59 231.1 146 76.0
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 9.2e-59 230.3 134 80.6
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 1.2e-58 229.9 137 78.8
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 1.6e-58 229.6 143 76.9
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 1.6e-58 229.6 146 74.0
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 1.6e-58 229.6 136 77.9
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 2.0e-58 229.2 143 76.2
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 2.0e-58 229.2 146 74.0
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 2.7e-58 228.8 143 75.5
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 2.7e-58 228.8 134 79.9
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 2.7e-58 228.8 143 76.9
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 3.5e-58 228.4 143 75.5
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 4.5e-58 228.0 143 75.5
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 5.9e-58 227.6 127 83.5
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 7.8e-58 227.3 146 75.3
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 7.8e-58 227.3 136 77.9
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 7.8e-58 227.3 146 76.0
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 1.0e-57 226.9 132 81.8
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 1.3e-57 226.5 124 83.1
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 1.3e-57 226.5 128 83.6
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 1.3e-57 226.5 146 74.0
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 1.7e-57 226.1 136 77.9
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.7e-57 226.1 144 73.6
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 1.7e-57 226.1 146 74.7
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 1.7e-57 226.1 145 73.1
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 2.3e-57 225.7 143 75.5
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 2.3e-57 225.7 143 75.5
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 2.3e-57 225.7 129 80.6
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 2.3e-57 225.7 148 73.0
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 2.9e-57 225.3 143 74.8
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 2.9e-57 225.3 129 80.6
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 2.9e-57 225.3 144 76.4
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 3.8e-57 224.9 137 77.4
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 3.8e-57 224.9 146 74.0
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 3.8e-57 224.9 125 82.4
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 3.8e-57 224.9 130 80.0
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 6.6e-57 224.2 124 83.9
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 6.6e-57 224.2 134 78.4
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 8.6e-57 223.8 143 72.0
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 8.6e-57 223.8 129 82.2
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 1.1e-56 223.4 146 71.9
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 1.5e-56 223.0 135 77.0
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 1.9e-56 222.6 119 84.0
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 1.9e-56 222.6 119 84.0
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 2.5e-56 222.2 126 78.6
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 3.3e-56 221.9 119 83.2
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 5.6e-56 221.1 123 79.7
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 5.6e-56 221.1 123 79.7
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 7.3e-56 220.7 118 84.7
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 7.3e-56 220.7 146 74.0
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 9.5e-56 220.3 113 87.6
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 1.2e-55 219.9 143 72.7
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 1.6e-55 219.5 130 79.2
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 2.1e-55 219.2 143 72.0
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 2.1e-55 219.2 119 81.5
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 6.1e-55 217.6 119 82.4
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 8.0e-55 217.2 132 75.0
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 8.0e-55 217.2 143 72.0
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 8.0e-55 217.2 123 78.9
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 1.0e-54 216.9 131 77.1
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 1.4e-54 216.5 129 76.7
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 1.4e-54 216.5 145 71.0
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 2.3e-54 215.7 116 81.9
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 3.0e-54 215.3 128 75.8
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 5.2e-54 214.5 139 70.5
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 5.2e-54 214.5 126 77.8
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 5.2e-54 214.5 126 77.8
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 6.8e-54 214.2 123 76.4
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 2.0e-53 212.6 131 77.9
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 5.8e-53 211.1 117 78.6
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 7.5e-53 210.7 123 76.4
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 7.5e-53 210.7 136 71.3
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 7.5e-53 210.7 160 65.0
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 7.5e-53 210.7 130 74.6
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 1.3e-52 209.9 119 81.5
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 2.2e-52 209.1 117 81.2
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 2.2e-52 209.1 132 72.7
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 4.9e-52 208.0 126 77.0
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 6.4e-52 207.6 120 79.2
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 6.4e-52 207.6 120 79.2
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 6.4e-52 207.6 116 79.3
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 8.3e-52 207.2 120 79.2
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 4.1e-51 204.9 152 63.8
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 4.1e-51 204.9 152 63.8
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 7.0e-51 204.1 126 76.2
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 7.0e-51 204.1 111 80.2
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 9.2e-51 203.8 134 72.4
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 1.6e-50 203.0 112 79.5
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 2.7e-50 202.2 116 79.3
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 2.7e-50 202.2 116 78.4
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 1.7e-49 199.5 150 64.7
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 3.0e-49 198.7 126 70.6
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 5.0e-49 198.0 129 72.1
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 2.5e-48 195.7 127 66.1
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 5.6e-48 194.5 114 74.6
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 1.2e-47 193.4 105 82.9
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 1.2e-47 193.4 125 72.0
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 6.8e-46 187.6 168 57.1
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 6.8e-46 187.6 127 66.9
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.5e-45 186.4 104 76.9
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 4.4e-45 184.9 104 76.0
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 1.7e-44 183.0 127 70.9
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.9e-43 179.5 149 61.7
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 1.2e-42 176.8 113 76.1
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 1.6e-42 176.4 91 80.2
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 3.5e-42 175.3 134 66.4
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.0e-41 173.7 153 60.1
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 8.6e-41 170.6 108 74.1
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 1.5e-40 169.9 88 86.4
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 9.9e-37 157.1 92 78.3
Atru.chr8.2413 Acer truncatum HOM05D005035 ORTHO05D006141 2.4e-35 152.5 128 62.5
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 3.2e-35 152.1 98 76.5
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.6e-34 149.8 108 65.7
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 1.0e-33 147.1 78 76.9
AUR62026990 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.3e-25 120.2 104 55.8
Gohir.D09G023800 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.3e-25 120.2 88 71.6
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 2.3e-25 119.4 61 82.0
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 2.4e-22 109.4 64 68.8
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 6.4e-20 101.3 61 68.9
BcaC04g21225 Brassica carinata HOM05D005035 ORTHO05D006141 6.0e-18 94.7 52 82.7
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 1.5e-16 90.1 43 79.1
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 8.1e-15 84.3 52 67.3
QL02p078176 Quercus lobata HOM05D005035 ORTHO05D006141 3.1e-14 82.4 65 69.2
vmacro18227 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 3.1e-14 82.4 73 63.0
Nn1g06334 Nelumbo nucifera HOM05D005035 ORTHO05D006141 1.6e-10 70.1 38 89.5
CSS0020716 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.5e-10 68.9 44 68.2
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 7.9e-10 67.8 49 63.3
CARHR102660 Cardamine hirsuta HOM05D005035 ORTHO05D006141 1.1e-08 63.9 42 69.0
CSS0011814 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 8.1e-07 57.8 30 73.3
Dinv33674 Davidia involucrata HOM05D005035 ORTHO05D006141 1.8e-06 56.6 42 71.4


User provided reference genes

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