Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 2.8e-143 511.9 253 100.0
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 2.3e-113 412.5 218 94.0
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 1.3e-79 300.4 216 69.4
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 1.2e-77 293.9 216 68.1
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 2.6e-77 292.7 216 67.6
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 4.5e-77 292.0 216 67.6
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 7.7e-77 291.2 217 66.8
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 1.3e-76 290.4 216 67.1
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 3.8e-76 288.9 216 66.7
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 5.0e-76 288.5 218 66.1
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 1.9e-75 286.6 207 69.1
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 1.9e-75 286.6 201 67.2
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 3.2e-75 285.8 204 68.1
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 3.2e-75 285.8 204 68.1
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 7.2e-75 284.6 217 67.3
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 2.7e-74 282.7 204 67.2
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 6.1e-74 281.6 221 64.3
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 7.9e-74 281.2 222 64.4
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 1.0e-73 280.8 218 63.3
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 1.4e-73 280.4 216 65.7
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 1.4e-73 280.4 216 65.7
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 3.0e-73 279.3 216 64.8
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 8.8e-73 277.7 216 64.4
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 1.1e-72 277.3 216 64.4
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 2.0e-72 276.6 216 63.9
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 2.6e-72 276.2 215 61.9
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 3.3e-72 275.8 216 64.8
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 4.4e-72 275.4 218 63.3
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 5.7e-72 275.0 200 70.0
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 7.4e-72 274.6 218 64.2
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 7.4e-72 274.6 216 64.8
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 7.4e-72 274.6 214 64.5
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 9.7e-72 274.2 215 63.7
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 1.7e-71 273.5 214 64.0
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 1.7e-71 273.5 213 64.3
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 2.2e-71 273.1 217 62.2
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 2.2e-71 273.1 216 64.8
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 3.7e-71 272.3 216 63.4
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 3.7e-71 272.3 214 62.6
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 4.8e-71 271.9 216 64.4
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 6.3e-71 271.6 205 64.9
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 8.2e-71 271.2 217 62.7
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 8.2e-71 271.2 214 62.6
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 8.2e-71 271.2 215 61.9
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 8.2e-71 271.2 217 61.8
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 1.1e-70 270.8 215 63.3
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 1.4e-70 270.4 216 63.9
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 1.8e-70 270.0 215 62.8
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 2.4e-70 269.6 214 63.6
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 3.1e-70 269.2 215 62.3
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 4.1e-70 268.9 222 62.2
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 5.3e-70 268.5 220 62.7
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 7.0e-70 268.1 216 63.0
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 7.0e-70 268.1 216 60.2
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 7.0e-70 268.1 215 62.3
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 1.2e-69 267.3 214 62.1
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 1.2e-69 267.3 214 62.1
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 1.2e-69 267.3 215 61.9
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 2.0e-69 266.5 214 62.1
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 2.0e-69 266.5 215 62.3
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 2.0e-69 266.5 205 65.4
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 3.5e-69 265.8 224 59.8
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 3.5e-69 265.8 211 64.5
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 7.7e-69 264.6 213 59.6
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 7.7e-69 264.6 214 61.7
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 1.0e-68 264.2 219 62.6
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 1.3e-68 263.8 216 62.5
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 2.9e-68 262.7 215 60.9
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 3.8e-68 262.3 214 58.9
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 5.0e-68 261.9 214 60.3
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 5.0e-68 261.9 217 61.8
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 8.5e-68 261.2 208 60.6
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 1.1e-67 260.8 217 61.8
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 1.5e-67 260.4 215 60.5
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 1.9e-67 260.0 220 61.8
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 2.5e-67 259.6 220 61.4
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 3.2e-67 259.2 224 61.6
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 3.2e-67 259.2 251 55.8
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 7.2e-67 258.1 218 59.6
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 7.2e-67 258.1 201 63.2
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 1.6e-66 256.9 220 57.3
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 1.6e-66 256.9 204 64.2
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 2.7e-66 256.1 218 59.6
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 3.6e-66 255.8 223 58.3
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 4.7e-66 255.4 192 65.1
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 6.1e-66 255.0 223 57.4
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 1.0e-65 254.2 213 61.0
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 1.0e-65 254.2 214 61.7
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 1.4e-65 253.8 221 57.0
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 1.4e-65 253.8 188 66.0
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 1.4e-65 253.8 171 71.3
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 1.8e-65 253.4 193 65.8
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 1.8e-65 253.4 249 53.8
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 3.0e-65 252.7 222 57.7
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 3.0e-65 252.7 224 56.7
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 3.0e-65 252.7 224 56.7
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 4.0e-65 252.3 226 58.4
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 6.7e-65 251.5 218 58.7
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 1.2e-64 250.8 221 57.5
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 1.2e-64 250.8 214 62.1
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 1.5e-64 250.4 201 61.7
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 2.6e-64 249.6 224 56.2
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 2.6e-64 249.6 215 61.4
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 5.7e-64 248.4 219 61.2
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 1.7e-63 246.9 184 66.3
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 1.7e-63 246.9 224 55.8
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 1.7e-63 246.9 220 56.4
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 1.7e-63 246.9 224 55.8
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 1.7e-63 246.9 203 62.6
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 4.8e-63 245.4 216 56.9
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 1.4e-62 243.8 224 55.8
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 1.4e-62 243.8 224 55.8
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 2.0e-61 240.0 220 57.3
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 4.5e-61 238.8 178 66.3
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 6.5e-60 235.0 224 57.1
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 8.5e-60 234.6 179 65.4
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 8.5e-60 234.6 239 56.1
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 1.2e-56 224.2 223 55.6
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 9.8e-56 221.1 192 58.3
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 2.2e-55 219.9 258 50.0
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 2.2e-55 219.9 258 50.0
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 5.9e-53 211.8 144 69.4
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 3.8e-52 209.1 182 57.7
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 1.5e-51 207.2 145 67.6
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 2.0e-48 196.8 151 68.2
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 9.8e-48 194.5 178 53.9
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 1.8e-46 190.3 227 47.6
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 1.8e-46 190.3 219 47.9
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 1.3e-44 184.1 145 63.4
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 9.5e-43 177.9 148 61.5
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 3.6e-42 176.0 148 57.4
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 4.0e-41 172.6 212 42.9
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 1.3e-39 167.5 142 56.3
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 3.2e-38 162.9 140 55.0
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 2.0e-37 160.2 125 64.0
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 7.8e-37 158.3 179 44.1
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 5.0e-36 155.6 222 39.6
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 4.3e-35 152.5 119 61.3
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 1.1e-33 147.9 145 55.9
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 1.4e-33 147.5 107 66.4
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 2.3e-33 146.7 143 47.6
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 3.5e-29 132.9 149 45.6
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 4.3e-27 125.9 217 38.2
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 5.8e-24 115.5 176 37.5
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 1.0e-20 104.8 97 54.6
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 1.4e-17 94.4 75 61.3
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 1.8e-17 94.0 143 35.7
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 5.2e-17 92.4 69 62.3
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 1.5e-16 90.9 49 79.6
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 3.8e-15 86.3 49 77.6
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 6.4e-15 85.5 76 52.6
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 6.4e-15 85.5 75 54.7
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 6.0e-13 79.0 49 65.3
EL10Ac2g02998 Beta vulgaris HOM05D000461 ORTHO05D005640 3.3e-11 73.2 60 66.7
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 3.6e-10 69.7 77 48.1
vmacro07224 Vaccinium macrocarpon HOM05D004585 ORTHO05D037280 3.6e-10 69.7 51 68.6
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 6.2e-10 68.9 57 56.1
MD15G1437100 Malus domestica HOM05D004585 ORTHO05D005640 3.1e-09 66.6 76 50.0
Glyma.09G232800 Glycine max HOM05D004585 ORTHO05D005640 6.9e-09 65.5 89 47.2
SalBow3G2087 Salvia bowleyana HOM05D004585 ORTHO05D005640 2.0e-08 63.9 44 68.2
PSO478G2622 Papaver somniferum HOM05D004585 ORTHO05D037280 3.4e-08 63.2 33 81.8
PSO447G0101 Papaver somniferum HOM05D004585 ORTHO05D037280 1.7e-07 60.8 73 46.6
DCAR_009360 Daucus carota HOM05D003145 ORTHO05D003586 3.8e-07 59.7 88 34.1
CSS0040420 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 2.4e-06 57.0 78 35.9
Rhsim03G0179900 Rhododendron simsii HOM05D003145 ORTHO05D003586 4.2e-06 56.2 95 33.7
SMO364G0264 Selaginella moellendorffii HOM05D003145 ORTHO05D000124 4.2e-06 56.2 79 31.6
Ah.14g089330 Amaranthus hybridus HOM05D001563 ORTHO05D001956 5.4e-06 55.8 78 32.1
CBR_g23080 Chara braunii HOM05D005565 ORTHO05D006950 5.4e-06 55.8 74 36.5
Gohir.A03G191900 Gossypium hirsutum HOM05D000561 ORTHO05D000514 5.4e-06 55.8 66 36.4
Gohir.D02G212800 Gossypium hirsutum HOM05D000561 ORTHO05D000514 5.4e-06 55.8 66 36.4
Gorai.005G240800 Gossypium raimondii HOM05D000561 ORTHO05D000514 5.4e-06 55.8 66 36.4
HanXRQChr11g0324191 Helianthus annuus HOM05D000561 ORTHO05D000514 5.4e-06 55.8 65 35.4
CSS0043481 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 7.1e-06 55.5 78 35.9
CSS0022791 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 9.3e-06 55.1 78 34.6
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 9.3e-06 55.1 78 34.6
Lj1P996T49 Lonicera japonica HOM05D003145 ORTHO05D003586 9.3e-06 55.1 80 36.2
HPP92_015634 Vanilla planifolia HOM05D001543 ORTHO05D001722 9.3e-06 55.1 113 30.1


User provided reference genes

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