Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0120 Ceratophyllum demersum HOM05D004952 ORTHO05D006131 5.4e-30 133.7 67 100.0
QL02p006188 Quercus lobata HOM05D004952 ORTHO05D006131 2.9e-15 84.7 65 56.9
Atru.chr13.612 Acer truncatum HOM05D004952 ORTHO05D006131 6.4e-15 83.6 63 60.3
TAR381G0370 Trochodendron aralioides HOM05D004952 ORTHO05D006131 1.9e-14 82.0 65 60.0
TAR625G1292 Trochodendron aralioides HOM05D004952 ORTHO05D006131 2.4e-14 81.6 65 60.0
Aqoxy6G00884 Aquilegia oxysepala HOM05D004952 ORTHO05D006131 3.2e-14 81.3 62 61.3
GSVIVG01009573001 Vitis vinifera HOM05D004952 ORTHO05D006131 7.1e-14 80.1 64 57.8
THA.LOC104813523 Tarenaya hassleriana HOM05D004952 ORTHO05D006131 1.6e-13 79.0 64 56.2
Manes.10G059950 Manihot esculenta HOM05D004952 ORTHO05D006131 2.1e-13 78.6 65 56.9
CARHR074230 Cardamine hirsuta HOM05D004952 ORTHO05D006131 4.6e-13 77.4 65 56.9
Carub.0001s2004 Capsella rubella HOM05D004952 ORTHO05D006131 7.9e-13 76.6 65 55.4
Nn6g34572 Nelumbo nucifera HOM05D004952 ORTHO05D006131 7.9e-13 76.6 65 56.9
BcaB02g07284 Brassica carinata HOM05D004952 ORTHO05D006131 1.0e-12 76.3 65 56.9
AT1G80260 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 1.8e-12 75.5 60 60.0
BcaC03g15988 Brassica carinata HOM05D004952 ORTHO05D006131 1.8e-12 75.5 65 53.8
Actinidia03540 Actinidia chinensis HOM05D004952 ORTHO05D006131 2.3e-12 75.1 65 53.8
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 2.3e-12 75.1 65 53.8
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 2.3e-12 75.1 65 53.8
CANSAT25G3148 Cannabis sativa HOM05D004952 ORTHO05D006131 2.3e-12 75.1 64 53.1
Thhalv10018067m.g Eutrema salsugineum HOM05D004952 ORTHO05D006131 2.3e-12 75.1 60 60.0
Gohir.A10G194100 Gossypium hirsutum HOM05D004952 ORTHO05D006131 2.3e-12 75.1 62 56.5
Cpa.g.sc64.8 Carica papaya HOM05D004952 ORTHO05D006131 3.0e-12 74.7 65 53.8
TWI36G1022 Tripterygium wilfordii HOM05D004952 ORTHO05D006131 3.0e-12 74.7 63 50.8
AT1G20570 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 5.1e-12 73.9 65 53.8
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 5.1e-12 73.9 65 53.8
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 6.7e-12 73.6 51 66.7
Gohir.D10G201200 Gossypium hirsutum HOM05D004952 ORTHO05D006131 6.7e-12 73.6 62 54.8
Gorai.011G225900 Gossypium raimondii HOM05D004952 ORTHO05D006131 6.7e-12 73.6 62 54.8
CiPaw.16G049700 Carya illinoinensis HOM05D004952 ORTHO05D006131 1.5e-11 72.4 63 50.8
ATR0706G013 Amborella trichopoda HOM05D004952 ORTHO05D006131 1.9e-11 72.0 64 57.8
C06p29060 Brassica napus HOM05D004952 ORTHO05D006131 1.9e-11 72.0 63 57.1
BolC6t38069H Brassica oleracea HOM05D004952 ORTHO05D006131 1.9e-11 72.0 63 57.1
COL.COLO4_06475 Corchorus olitorius HOM05D004952 ORTHO05D006131 1.9e-11 72.0 62 54.8
Duzib114G0971 Durio zibethinus HOM05D004952 ORTHO05D006131 1.9e-11 72.0 62 54.8
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 3.3e-11 71.2 65 52.3
CANSAT35G0575 Cannabis sativa HOM05D004952 ORTHO05D006131 3.3e-11 71.2 64 50.0
Ciclev10000139m.g Citrus clementina HOM05D004952 ORTHO05D006131 3.3e-11 71.2 65 53.8
MD15G1036000 Malus domestica HOM05D004952 ORTHO05D006131 3.3e-11 71.2 65 50.8
FvH4_2g40750 Fragaria vesca HOM05D004952 ORTHO05D006131 4.3e-11 70.9 65 49.2
Thecc.10G126500 Theobroma cacao HOM05D004952 ORTHO05D006131 4.3e-11 70.9 62 54.8
FAN27G3039 Fragaria x ananassa HOM05D004952 ORTHO05D006131 5.6e-11 70.5 65 49.2
FAN15G3424 Fragaria x ananassa HOM05D004952 ORTHO05D006131 7.4e-11 70.1 65 49.2
CSS0007693 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 9.6e-11 69.7 57 56.1
CSS0048180 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 9.6e-11 69.7 57 56.1
Lj4C49T7 Lonicera japonica HOM05D004952 ORTHO05D006131 2.1e-10 68.6 65 47.7
Hma1.2p1_0260F.1_g104650 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 3.7e-10 67.8 63 50.8
arahy.Tifrunner.gnm1.ann1.LUQS0S Arachis hypogaea HOM05D004952 ORTHO05D006131 4.8e-10 67.4 51 60.8
Potri.016G000100 Populus trichocarpa HOM05D004952 ORTHO05D006131 1.1e-09 66.2 51 62.7
arahy.Tifrunner.gnm1.ann1.SSY1YH Arachis hypogaea HOM05D004952 ORTHO05D006131 1.4e-09 65.9 51 58.8
Glyma.06G036500 Glycine max HOM05D004952 ORTHO05D006131 1.4e-09 65.9 51 62.7
Medtr3g101230 Medicago truncatula HOM05D004952 ORTHO05D006131 1.4e-09 65.9 51 58.8
Lj1g0021809 Lotus japonicus HOM05D004952 ORTHO05D006131 1.8e-09 65.5 51 60.8
PSO063G1848 Papaver somniferum HOM05D004952 ORTHO05D006131 1.8e-09 65.5 63 52.4
HanXRQChr02g0059171 Helianthus annuus HOM05D004952 ORTHO05D006131 2.4e-09 65.1 55 56.4
Lalb_Chr08g0245691 Lupinus albus HOM05D004952 ORTHO05D006131 3.1e-09 64.7 51 58.8
Rhsim13G0049200 Rhododendron simsii HOM05D004952 ORTHO05D006131 3.1e-09 64.7 53 56.6
Sc18g0002370 Simmondsia chinensis HOM05D004952 ORTHO05D006131 3.1e-09 64.7 65 49.2
EL10Ac2g03413 Beta vulgaris HOM05D004952 ORTHO05D006131 4.0e-09 64.3 63 46.0
Eucgr.F02379 Eucalyptus grandis HOM05D004952 ORTHO05D006131 4.0e-09 64.3 65 47.7
Phvul.009G062500 Phaseolus vulgaris HOM05D004952 ORTHO05D006131 4.0e-09 64.3 51 60.8
SGA_v2.0_scaffold156G37306 Striga asiatica HOM05D004952 ORTHO05D006131 4.0e-09 64.3 63 44.4
VMungo1309G1417 Vigna mungo HOM05D004952 ORTHO05D006131 5.3e-09 63.9 51 60.8
Cc10_g03830 Coffea canephora HOM05D004952 ORTHO05D006131 6.9e-09 63.5 53 56.6
PGR031G2121 Punica granatum HOM05D004952 ORTHO05D006131 1.2e-08 62.8 65 47.7
Zm00001eb327280 Zea mays HOM05D004952 ORTHO05D006131 1.2e-08 62.8 58 55.2
Psat5g044920 Pisum sativum HOM05D004952 ORTHO05D006131 1.5e-08 62.4 51 56.9
SHI13748 Sapria himalayana HOM05D004952 ORTHO05D006131 1.5e-08 62.4 65 43.1
Sed0020372 Sechium edule HOM05D004952 ORTHO05D006131 1.5e-08 62.4 65 44.6
CsaV3_4G034010 Cucumis sativus L. HOM05D004952 ORTHO05D006131 2.6e-08 61.6 65 44.6
Glyma.04G036340 Glycine max HOM05D004952 ORTHO05D006131 2.6e-08 61.6 51 58.8
RcHm_v2.0_Chr6g0299841 Rosa chinensis HOM05D004952 ORTHO05D006131 2.6e-08 61.6 65 43.1
Sp5g35550 Schrenkiella parvula HOM05D004952 ORTHO05D006131 2.6e-08 61.6 45 62.2
Hund10174 Selenicereus undatus HOM05D004952 ORTHO05D006131 2.6e-08 61.6 53 52.8
Prupe.1G389900 Prunus persica HOM05D004952 ORTHO05D006131 4.5e-08 60.8 46 52.2
Os12g0606100 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 5.8e-08 60.5 54 50.0
CAN.G371.63 Capsicum annuum HOM05D004952 ORTHO05D006131 1.0e-07 59.7 53 54.7
MSTRG.25114 Avicennia marina HOM05D004952 ORTHO05D006131 1.3e-07 59.3 51 54.9
Os02g0523300 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 1.3e-07 59.3 54 48.1
Oeu055752.1 Olea europaea HOM05D004952 ORTHO05D006131 2.9e-07 58.2 63 46.0
PGSC0003DMG400008031 Solanum tuberosum HOM05D004952 ORTHO05D006131 4.9e-07 57.4 53 54.7
MELO3C016726.2 Cucumis melo HOM05D004952 ORTHO05D006131 6.5e-07 57.0 65 41.5
unitig_0.g725 Utricularia gibba HOM05D004952 ORTHO05D006131 6.5e-07 57.0 58 46.6
Sopen04g033000 Solanum pennellii HOM05D004952 ORTHO05D006131 8.4e-07 56.6 51 56.9
Oeu007037.1 Olea europaea HOM05D004952 ORTHO05D006131 1.1e-06 56.2 63 44.4
SEGI_09331 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 1.1e-06 56.2 63 44.4
Migut.C00614 Erythranthe guttata HOM05D004952 ORTHO05D006131 2.5e-06 55.1 54 44.4
Lsat_1_v5_gn_6_69040 Lactuca sativa HOM05D004952 ORTHO05D006131 3.2e-06 54.7 63 47.6
Sabra16G0008200 Salix brachista HOM05D004952 ORTHO05D006131 3.2e-06 54.7 41 61.0
Solyc04g079390.3 Solanum lycopersicum HOM05D004952 ORTHO05D006131 3.2e-06 54.7 51 54.9
Cfa003370 Carpinus fangiana HOM05D004952 ORTHO05D006131 4.2e-06 54.3 62 41.9
Aa31LG4G540 Aethionema arabicum HOM05D004952 ORTHO05D006131 5.5e-06 53.9 65 44.6


User provided reference genes

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