Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 0.0e+00 1889.8 1050 100.0
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 0.0e+00 1447.6 1264 67.6
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 5.5e-169 599.4 1424 36.0
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 5.3e-164 582.8 1395 37.6
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 3.8e-162 576.6 1416 36.4
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 9.7e-158 562.0 1382 34.9
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 5.3e-156 556.2 1398 34.9
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 1.1e-153 548.5 1398 34.2
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 1.9e-153 547.7 1379 33.6
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 2.5e-153 547.4 1416 34.9
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 5.5e-153 546.2 1355 35.0
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 5.5e-153 546.2 1428 35.1
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 3.6e-152 543.5 1384 37.1
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 6.1e-152 542.7 1377 34.3
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 1.0e-151 542.0 1393 35.2
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.1e-150 538.5 1382 34.7
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 2.0e-150 537.7 1389 33.3
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 1.7e-149 534.6 1383 34.8
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 2.2e-149 534.3 1381 35.3
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 2.2e-149 534.3 1405 33.6
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 4.8e-149 533.1 1305 35.4
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 4.8e-149 533.1 1366 34.8
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 6.3e-149 532.7 1379 34.7
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 1.4e-148 531.6 1425 34.7
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 1.4e-148 531.6 1388 35.5
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 3.1e-148 530.4 1385 35.4
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 9.1e-148 528.9 1405 34.0
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 9.1e-148 528.9 1393 36.0
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 1.5e-147 528.1 1363 34.6
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 4.5e-147 526.6 1434 36.4
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 1.0e-146 525.4 1366 33.3
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 1.0e-146 525.4 1384 34.5
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 8.5e-146 522.3 1378 34.5
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 1.9e-145 521.2 1389 32.9
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 1.9e-145 521.2 1392 36.7
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 4.2e-145 520.0 1427 33.6
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 2.1e-144 517.7 1399 32.7
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 2.7e-144 517.3 1448 35.4
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 6.1e-144 516.2 1417 33.7
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 6.1e-144 516.2 1449 33.3
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 1.8e-143 514.6 1399 35.9
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 2.3e-143 514.2 1420 32.8
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 3.0e-143 513.8 1385 35.2
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 6.7e-143 512.7 1404 34.2
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 8.8e-143 512.3 1396 35.0
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 1.3e-141 508.4 1423 34.6
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 2.2e-141 507.7 1352 34.9
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 1.1e-140 505.4 1245 34.5
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 1.4e-140 505.0 1219 36.3
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 1.2e-139 501.9 1369 34.4
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 2.9e-138 497.3 1393 34.1
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 1.9e-137 494.6 1327 33.5
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 4.2e-137 493.4 1395 34.1
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 3.6e-136 490.3 1405 33.5
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 6.1e-136 489.6 1315 33.2
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 1.8e-135 488.0 1380 33.8
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 4.0e-135 486.9 1356 33.8
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 1.2e-134 485.3 1419 32.4
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 5.7e-134 483.0 1235 35.3
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 5.7e-134 483.0 1133 35.3
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 8.3e-133 479.2 1297 33.9
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 1.7e-130 471.5 1466 32.3
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 3.2e-129 467.2 1359 33.0
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 6.1e-128 463.0 1314 34.0
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 1.4e-127 461.8 1417 31.5
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 4.0e-127 460.3 1392 32.7
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 4.9e-125 453.4 1284 36.1
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 8.3e-125 452.6 1109 36.3
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 3.1e-124 450.7 1308 34.0
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 4.1e-124 450.3 1430 32.3
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 2.0e-123 448.0 1464 31.3
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 2.7e-123 447.6 1325 32.9
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 2.7e-123 447.6 865 38.3
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 2.1e-120 438.0 1229 33.7
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 2.8e-120 437.6 1304 32.0
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 3.6e-120 437.2 1292 33.9
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 8.0e-120 436.0 1355 32.3
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 1.0e-119 435.6 1331 33.4
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 3.0e-119 434.1 1253 34.2
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 4.0e-119 433.7 1387 31.0
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 2.2e-117 427.9 1254 34.1
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 3.7e-117 427.2 1269 33.5
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 3.9e-114 417.2 1279 34.2
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 5.0e-114 416.8 1239 34.2
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 5.0e-114 416.8 1239 34.2
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 8.6e-114 416.0 1272 34.2
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 1.1e-113 415.6 1227 34.1
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 8.0e-112 409.5 1414 30.0
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 7.5e-110 402.9 1129 33.6
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 7.5e-110 402.9 1466 30.9
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 4.9e-109 400.2 1505 28.8
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 3.2e-108 397.5 719 38.8
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 5.4e-108 396.7 955 35.3
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 1.3e-106 392.1 1346 32.0
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 1.2e-104 385.6 1376 30.1
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 3.6e-104 384.0 1312 33.5
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 1.6e-99 368.6 1280 33.0
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 2.1e-99 368.2 1062 33.6
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 4.7e-96 357.1 1382 31.8
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 1.5e-94 352.1 1248 30.4
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 3.5e-91 340.9 898 34.4
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 7.1e-76 290.0 1016 29.5
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 8.7e-74 283.1 867 29.1
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 5.5e-68 263.8 653 33.8
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 2.1e-67 261.9 1276 27.7
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 2.7e-67 261.5 1151 28.7
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 9.0e-63 246.5 872 28.0
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.3e-61 242.7 599 33.7
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 3.2e-60 238.0 821 28.3
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 4.2e-60 237.7 829 27.5
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 5.7e-57 227.3 837 27.4
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 7.9e-51 206.8 409 45.5
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 5.3e-47 194.1 521 33.2
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 1.0e-45 189.9 762 29.1
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 2.4e-39 168.7 333 31.5
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 3.6e-35 154.8 169 46.7
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 4.8e-32 144.4 504 29.6
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 1.4e-31 142.9 644 28.6
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 8.8e-26 123.6 94 63.8
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 1.1e-23 116.7 642 25.9
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 3.1e-23 115.2 91 59.3
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 4.1e-23 114.8 278 37.8
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 4.5e-22 111.3 241 41.9
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 3.2e-20 105.1 172 35.5
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 3.2e-20 105.1 64 76.6
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 7.5e-17 94.0 66 60.6
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 9.8e-17 93.6 272 39.0
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 1.1e-15 90.1 125 44.0
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 1.6e-14 86.3 289 30.4
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 2.0e-14 85.9 105 43.8
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 5.9e-14 84.3 342 30.4
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 3.8e-13 81.6 306 24.2
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 7.2e-12 77.4 67 52.2
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 9.5e-12 77.0 50 64.0
SHI24778 Sapria himalayana HOM05D004594 ORTHO05D005225 4.0e-10 71.6 94 45.7
HPP92_001999 Vanilla planifolia HOM05D004594 ORTHO05D005225 6.8e-10 70.9 69 53.6
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 7.5e-09 67.4 51 62.7


User provided reference genes

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