Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE03G0512 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 2.3e-102 375.6 185 100.0
CDE04G0267 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 1.2e-90 336.7 177 94.4
Nn3g18949 Nelumbo nucifera HOM05D002306 ORTHO05D005773 9.3e-56 220.7 179 59.2
Aqoxy6G02068 Aquilegia oxysepala HOM05D002306 ORTHO05D005773 1.1e-53 213.8 177 58.8
Manes.01G185000 Manihot esculenta HOM05D002306 ORTHO05D005773 6.3e-52 208.0 178 59.0
GSVIVG01038567001 Vitis vinifera HOM05D002306 ORTHO05D005773 9.0e-51 204.1 179 55.3
CANSAT21G2187 Cannabis sativa HOM05D002306 ORTHO05D005773 4.5e-50 201.8 180 55.6
CiPaw.06G045200 Carya illinoinensis HOM05D002306 ORTHO05D005773 4.5e-50 201.8 178 56.2
MBI06_g46366_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 5.9e-50 201.4 170 57.1
PSO135G0144 Papaver somniferum HOM05D002306 ORTHO05D005773 1.3e-49 200.3 174 54.6
PSO384G1073 Papaver somniferum HOM05D002306 ORTHO05D005773 1.3e-49 200.3 174 54.6
Dinv29264 Davidia involucrata HOM05D002306 ORTHO05D005773 1.7e-49 199.9 178 53.9
Nn1g00292 Nelumbo nucifera HOM05D002306 ORTHO05D005773 2.9e-49 199.1 175 56.0
Phvul.001G075000 Phaseolus vulgaris HOM05D002306 ORTHO05D005773 6.5e-49 198.0 181 51.4
Cfa016243 Carpinus fangiana HOM05D002306 ORTHO05D005773 8.5e-49 197.6 182 56.0
Lalb_Chr01g0013731 Lupinus albus HOM05D002306 ORTHO05D005773 4.2e-48 195.3 180 52.8
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 5.5e-48 194.9 171 60.2
TWI39G0548 Tripterygium wilfordii HOM05D002306 ORTHO05D005773 5.5e-48 194.9 178 53.9
PGR142G2770 Punica granatum HOM05D002306 ORTHO05D005773 9.3e-48 194.1 181 52.5
Glyma.19G065800 Glycine max HOM05D002306 ORTHO05D005773 2.1e-47 193.0 181 53.6
ATR0602G226 Amborella trichopoda HOM05D002306 ORTHO05D005773 2.7e-47 192.6 183 51.4
VMungo0647G1725 Vigna mungo HOM05D002306 ORTHO05D005773 2.7e-47 192.6 181 50.8
CSS0036676 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D005773 4.6e-47 191.8 178 52.2
Ca_12784_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 6.1e-47 191.4 181 52.5
Ca_12788_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 6.1e-47 191.4 181 52.5
Cc02_g01380 Coffea canephora HOM05D002306 ORTHO05D005773 7.9e-47 191.0 178 53.4
QL09p008623 Quercus lobata HOM05D002306 ORTHO05D005773 1.3e-46 190.3 181 51.4
Glyma.14G162400 Glycine max HOM05D002306 ORTHO05D005773 2.3e-46 189.5 176 52.8
Os05g0542200 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D005773 5.1e-46 188.3 180 54.4
Prupe.2G313000 Prunus persica HOM05D002306 ORTHO05D005773 5.1e-46 188.3 181 51.9
QL05p052295 Quercus lobata HOM05D002306 ORTHO05D005773 5.1e-46 188.3 173 53.8
Eucgr.K00394 Eucalyptus grandis HOM05D002306 ORTHO05D005773 8.7e-46 187.6 180 50.6
Potri.012G017100 Populus trichocarpa HOM05D002306 ORTHO05D005773 8.7e-46 187.6 176 52.3
Sed0011455 Sechium edule HOM05D002306 ORTHO05D005773 1.1e-45 187.2 181 51.4
FAN10G2791 Fragaria x ananassa HOM05D002306 ORTHO05D005773 1.9e-45 186.4 179 51.4
Manes.05G190400 Manihot esculenta HOM05D002306 ORTHO05D005773 1.9e-45 186.4 123 68.3
DCAR_020335 Daucus carota HOM05D002306 ORTHO05D005773 4.3e-45 185.3 178 53.4
Medtr1g007860 Medicago truncatula HOM05D002306 ORTHO05D005773 4.3e-45 185.3 181 51.4
HPP92_010499 Vanilla planifolia HOM05D002306 ORTHO05D005773 4.3e-45 185.3 176 52.3
Zm00001eb294430 Zea mays HOM05D002306 ORTHO05D005773 4.3e-45 185.3 179 53.1
Aa31LG3G9420 Aethionema arabicum HOM05D002306 ORTHO05D005773 7.4e-45 184.5 177 50.3
FAN10G0091 Fragaria x ananassa HOM05D002306 ORTHO05D005773 9.7e-45 184.1 179 51.4
MD07G1293200 Malus domestica HOM05D002306 ORTHO05D005773 1.6e-44 183.3 182 50.5
Sabra15G0009300 Salix brachista HOM05D002306 ORTHO05D005773 1.6e-44 183.3 178 51.1
EL10Ac3g05271 Beta vulgaris HOM05D002306 ORTHO05D005773 2.2e-44 183.0 177 50.3
Lj3C903G6 Lonicera japonica HOM05D002306 ORTHO05D005773 2.2e-44 183.0 177 51.4
MD01G1222600 Malus domestica HOM05D002306 ORTHO05D005773 2.2e-44 183.0 178 51.1
Actinidia08661 Actinidia chinensis HOM05D002306 ORTHO05D005773 3.7e-44 182.2 173 53.2
vmacro10129 Vaccinium macrocarpon HOM05D002306 ORTHO05D005773 4.8e-44 181.8 175 51.4
ClCG01G000390 Citrullus lanatus HOM05D002306 ORTHO05D005773 6.3e-44 181.4 181 49.7
Duzib205G1406 Durio zibethinus HOM05D002306 ORTHO05D005773 1.1e-43 180.6 178 50.0
MELO3C005890.2 Cucumis melo HOM05D002306 ORTHO05D005773 1.4e-43 180.3 181 49.2
Lj1g0011159 Lotus japonicus HOM05D002306 ORTHO05D005773 1.4e-43 180.3 176 51.1
Potri.015G011300 Populus trichocarpa HOM05D002306 ORTHO05D005773 1.4e-43 180.3 178 50.0
RcHm_v2.0_Chr1g0381481 Rosa chinensis HOM05D002306 ORTHO05D005773 1.4e-43 180.3 178 51.1
Sp7g25780 Schrenkiella parvula HOM05D002306 ORTHO05D005773 1.4e-43 180.3 177 49.7
Ciclev10020415m.g Citrus clementina HOM05D002306 ORTHO05D005773 1.8e-43 179.9 178 51.7
Gohir.D12G249800 Gossypium hirsutum HOM05D002306 ORTHO05D005773 1.8e-43 179.9 178 50.0
Gorai.008G267900 Gossypium raimondii HOM05D002306 ORTHO05D005773 1.8e-43 179.9 178 50.0
Duzib084G0543 Durio zibethinus HOM05D002306 ORTHO05D005773 2.4e-43 179.5 178 50.6
Carub.0008s1325 Capsella rubella HOM05D002306 ORTHO05D005773 3.1e-43 179.1 175 48.6
FvH4_7g31980 Fragaria vesca HOM05D002306 ORTHO05D005773 3.1e-43 179.1 170 51.8
FAN01G0065 Fragaria x ananassa HOM05D002306 ORTHO05D005773 5.3e-43 178.3 170 51.8
FAN06G4818 Fragaria x ananassa HOM05D002306 ORTHO05D005773 5.3e-43 178.3 170 51.8
THA.LOC104799971 Tarenaya hassleriana HOM05D002306 ORTHO05D005773 5.3e-43 178.3 177 48.6
CiPaw.05G198100 Carya illinoinensis HOM05D002306 ORTHO05D005773 6.9e-43 177.9 123 66.7
Cpa.g.sc3.100 Carica papaya HOM05D002306 ORTHO05D005773 9.1e-43 177.6 123 64.2
Thhalv10013609m.g Eutrema salsugineum HOM05D002306 ORTHO05D005773 9.1e-43 177.6 177 49.7
FAN03G1878 Fragaria x ananassa HOM05D002306 ORTHO05D005773 9.1e-43 177.6 169 51.5
AT5G53050 Arabidopsis thaliana HOM05D002306 ORTHO05D005773 1.2e-42 177.2 178 48.9
SalBow4G3229 Salvia bowleyana HOM05D002306 ORTHO05D005773 1.2e-42 177.2 187 49.7
Hma1.2p1_1587F.1_g292250 Hydrangea macrophylla HOM05D002306 ORTHO05D005773 1.5e-42 176.8 123 65.0
Actinidia06142 Actinidia chinensis HOM05D002306 ORTHO05D005773 2.0e-42 176.4 178 48.9
Atru.chr12.2238 Acer truncatum HOM05D002306 ORTHO05D005773 4.5e-42 175.3 127 60.6
CsaV3_5G000460 Cucumis sativus L. HOM05D002306 ORTHO05D005773 4.5e-42 175.3 181 47.5
Gohir.A12G249000 Gossypium hirsutum HOM05D002306 ORTHO05D005773 4.5e-42 175.3 178 48.9
Migut.F00200 Erythranthe guttata HOM05D002306 ORTHO05D005773 1.0e-41 174.1 178 49.4
Sc13g0009860 Simmondsia chinensis HOM05D002306 ORTHO05D005773 1.0e-41 174.1 123 62.6
Actinidia34230 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.3e-41 173.7 123 62.6
CARHR266070 Cardamine hirsuta HOM05D002306 ORTHO05D005773 1.7e-41 173.3 178 47.8
PGR042G0827 Punica granatum HOM05D002306 ORTHO05D005773 1.7e-41 173.3 125 59.2
Sopen03g022820 Solanum pennellii HOM05D002306 ORTHO05D005773 2.2e-41 172.9 179 46.9
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 2.9e-41 172.6 178 50.0
ECA232G4612 Erigeron canadensis HOM05D002306 ORTHO05D005773 3.8e-41 172.2 182 47.3
HanXRQChr04g0100471 Helianthus annuus HOM05D002306 ORTHO05D005773 3.8e-41 172.2 181 45.3
Ah.13g070360 Amaranthus hybridus HOM05D002306 ORTHO05D005773 5.0e-41 171.8 125 60.8
Rhsim09G0206400 Rhododendron simsii HOM05D002306 ORTHO05D005773 8.5e-41 171.0 181 47.5
Solyc03g083010.3 Solanum lycopersicum HOM05D002306 ORTHO05D005773 8.5e-41 171.0 179 46.4
PGSC0003DMG401018530 Solanum tuberosum HOM05D002306 ORTHO05D005773 8.5e-41 171.0 178 46.6
Thecc.03G200900 Theobroma cacao HOM05D002306 ORTHO05D005773 8.5e-41 171.0 183 47.0
AUR62019412 Chenopodium quinoa HOM05D002306 ORTHO05D005773 1.1e-40 170.6 149 55.0
AUR62006082 Chenopodium quinoa HOM05D002306 ORTHO05D005773 1.4e-40 170.2 120 64.2
Sp6g15210 Schrenkiella parvula HOM05D002306 ORTHO05D005773 1.4e-40 170.2 177 47.5
Zm00001eb342430 Zea mays HOM05D002306 ORTHO05D005773 1.9e-40 169.9 123 64.2
BcaB08g35665 Brassica carinata HOM05D002306 ORTHO05D005773 2.5e-40 169.5 179 45.8
BcaC04g20512 Brassica carinata HOM05D002306 ORTHO05D005773 2.5e-40 169.5 176 47.2
C09p42760 Brassica napus HOM05D002306 ORTHO05D005773 2.5e-40 169.5 176 47.2
BolC9t57152H Brassica oleracea HOM05D002306 ORTHO05D005773 2.5e-40 169.5 176 47.2
A10p10540 Brassica napus HOM05D002306 ORTHO05D005773 3.2e-40 169.1 176 47.2
BraA10t43138Z Brassica rapa HOM05D002306 ORTHO05D005773 3.2e-40 169.1 176 47.2
Psat6g034960 Pisum sativum HOM05D002306 ORTHO05D005773 4.2e-40 168.7 118 65.3
CAN.G481.26 Capsicum annuum HOM05D002306 ORTHO05D005773 5.5e-40 168.3 179 46.9
Lsat_1_v5_gn_9_49801 Lactuca sativa HOM05D002306 ORTHO05D005773 5.5e-40 168.3 179 45.3
Nitab4.5_0005491g0070 Nicotiana tabacum HOM05D002306 ORTHO05D005773 5.5e-40 168.3 178 46.1
arahy.Tifrunner.gnm1.ann1.FPLI9C Arachis hypogaea HOM05D002306 ORTHO05D005773 7.2e-40 167.9 182 47.3
Hund21009 Selenicereus undatus HOM05D002306 ORTHO05D005773 7.2e-40 167.9 121 61.2
COL.COLO4_16788 Corchorus olitorius HOM05D002306 ORTHO05D005773 9.4e-40 167.5 123 60.2
arahy.Tifrunner.gnm1.ann1.4T5RFS Arachis hypogaea HOM05D002306 ORTHO05D005773 1.2e-39 167.2 182 47.3
Oeu037052.1 Olea europaea HOM05D002306 ORTHO05D005773 2.1e-39 166.4 178 47.8
Nitab4.5_0000548g0060 Nicotiana tabacum HOM05D002306 ORTHO05D005773 2.7e-39 166.0 178 45.5
A03p15450 Brassica napus HOM05D002306 ORTHO05D005773 6.1e-39 164.9 174 47.1
BraA03t10837Z Brassica rapa HOM05D002306 ORTHO05D005773 6.1e-39 164.9 174 47.1
HanXRQChr15g0485691 Helianthus annuus HOM05D002306 ORTHO05D005773 7.9e-39 164.5 178 44.9
Actinidia08663 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.0e-38 164.1 118 61.9
Peaxi162Scf00740g00143 Petunia axillaris HOM05D002306 ORTHO05D005773 1.4e-38 163.7 178 45.5
BcaB01g04217 Brassica carinata HOM05D002306 ORTHO05D005773 1.8e-38 163.3 177 46.3
BraA03t10835Z Brassica rapa HOM05D002306 ORTHO05D005773 1.8e-38 163.3 174 46.6
A03p15420 Brassica napus HOM05D002306 ORTHO05D005773 2.3e-38 162.9 174 46.6
Eucgr.A01449 Eucalyptus grandis HOM05D002306 ORTHO05D005773 2.3e-38 162.9 125 54.4
Lsat_1_v5_gn_2_136261 Lactuca sativa HOM05D002306 ORTHO05D005773 8.8e-38 161.0 171 46.2
Oeu060994.1 Olea europaea HOM05D002306 ORTHO05D005773 8.8e-38 161.0 174 47.1
AL8G27680 Arabidopsis lyrata HOM05D002306 ORTHO05D005773 2.6e-37 159.5 224 39.7
Hund11654 Selenicereus undatus HOM05D002306 ORTHO05D005773 2.6e-37 159.5 179 45.8
C03p18010 Brassica napus HOM05D002306 ORTHO05D005773 7.4e-37 157.9 177 45.2
BolC3t14206H Brassica oleracea HOM05D002306 ORTHO05D005773 7.4e-37 157.9 177 45.2
Sabra12G0015300 Salix brachista HOM05D002306 ORTHO05D005773 2.8e-36 156.0 144 54.2
BcaC01g06217 Brassica carinata HOM05D002306 ORTHO05D005773 4.8e-36 155.2 177 44.6
Lsat_1_v5_gn_7_80100 Lactuca sativa HOM05D002306 ORTHO05D005773 4.5e-34 148.7 123 52.8
Ciclev10023844m.g Citrus clementina HOM05D002306 ORTHO05D005773 8.5e-33 144.4 178 44.9
Sed0009393 Sechium edule HOM05D002306 ORTHO05D005773 3.2e-32 142.5 94 66.0
Mapoly0155s0003 Marchantia polymorpha HOM05D002306 ORTHO05D005773 1.6e-31 140.2 124 48.4
unitig_748.g7291 Utricularia gibba HOM05D002306 ORTHO05D005773 1.6e-31 140.2 132 50.0
unitig_0.g2458 Utricularia gibba HOM05D000451 ORTHO05D000351 6.1e-31 138.3 115 56.5
AagrBONN_evm.TU.Sc2ySwM_228.3658 Anthoceros agrestis HOM05D002306 ORTHO05D005773 8.2e-28 127.9 105 54.3
CBR_g39074 Chara braunii HOM05D002306 ORTHO05D005773 2.0e-26 123.2 143 42.7
Pp3c4_28770 Physcomitrium patens HOM05D002306 ORTHO05D005773 1.1e-24 117.5 114 45.6
CBR_g52250 Chara braunii HOM05D002306 ORTHO05D005773 5.7e-21 105.1 115 43.5
Actinidia03176 Actinidia chinensis HOM05D002306 ORTHO05D005773 9.7e-21 104.4 75 58.7
SEGI_13792 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 2.7e-18 96.3 101 48.5
SMO147G0069 Selaginella moellendorffii HOM05D002306 ORTHO05D005773 6.5e-17 91.7 96 41.7
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 1.4e-14 84.0 80 51.2
SHI02360 Sapria himalayana HOM05D002306 ORTHO05D005773 4.8e-12 75.5 70 48.6
Cre11.g481250 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 1.0e-06 57.8 101 32.7


User provided reference genes

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