Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 1.8e-182 642.5 332 100.0
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 2.6e-149 532.3 364 80.8
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 1.3e-103 380.6 362 59.9
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 2.2e-103 379.8 362 59.7
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 2.9e-100 369.4 338 61.2
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 1.1e-99 367.5 365 57.3
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 2.7e-98 362.8 363 57.0
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 3.6e-98 362.5 365 58.1
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 4.7e-98 362.1 363 55.9
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 7.9e-98 361.3 362 59.1
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 2.0e-96 356.7 363 56.7
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 2.6e-96 356.3 363 56.7
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 9.7e-96 354.4 364 56.6
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 1.7e-95 353.6 365 57.3
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 8.2e-95 351.3 364 55.2
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.4e-94 350.5 365 55.9
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 3.1e-94 349.4 372 54.6
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 9.1e-94 347.8 364 58.0
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 2.0e-93 346.7 364 56.9
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 2.6e-93 346.3 365 55.6
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 2.6e-93 346.3 365 55.6
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 4.5e-93 345.5 377 53.8
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 5.9e-93 345.1 362 56.4
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.0e-92 344.4 362 56.4
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 1.7e-92 343.6 365 54.8
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 2.2e-92 343.2 375 54.9
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 3.8e-92 342.4 363 56.7
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 3.8e-92 342.4 362 56.1
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 8.5e-92 341.3 366 54.1
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 1.1e-91 340.9 365 54.5
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 2.5e-91 339.7 381 53.3
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 2.5e-91 339.7 367 54.0
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 4.2e-91 339.0 365 53.4
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 5.5e-91 338.6 367 53.4
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 1.6e-90 337.0 361 53.2
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 3.6e-90 335.9 368 53.5
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 4.7e-90 335.5 361 53.2
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 1.4e-89 334.0 365 52.3
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 1.8e-89 333.6 357 53.5
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 2.3e-89 333.2 359 52.9
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 8.8e-89 331.3 364 53.3
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 1.1e-88 330.9 400 53.2
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 1.1e-88 330.9 369 53.1
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 2.6e-88 329.7 362 51.9
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 3.3e-88 329.3 362 53.3
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 3.3e-88 329.3 367 52.0
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 9.7e-88 327.8 359 52.4
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 1.3e-87 327.4 355 53.8
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 1.7e-87 327.0 369 52.6
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 2.8e-87 326.2 365 53.7
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 6.3e-87 325.1 365 51.8
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 8.2e-87 324.7 357 52.4
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 1.1e-86 324.3 357 52.4
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.4e-86 323.9 362 52.8
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 1.4e-86 323.9 367 52.3
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.4e-86 323.2 357 52.1
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 4.1e-86 322.4 365 51.8
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 5.9e-85 318.5 360 51.7
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 5.9e-85 318.5 363 52.1
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 2.2e-84 316.6 381 52.2
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 2.9e-84 316.2 379 52.5
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 5.0e-84 315.5 365 52.9
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 5.0e-84 315.5 365 49.9
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 1.1e-83 314.3 332 55.7
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 1.1e-83 314.3 386 48.4
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 1.5e-83 313.9 366 51.9
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.5e-83 313.9 357 52.9
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 1.5e-83 313.9 380 49.7
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.9e-83 313.5 374 50.0
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 2.5e-83 313.2 368 49.2
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 5.5e-83 312.0 364 51.6
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.2e-82 310.8 365 52.1
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.6e-82 310.5 374 49.5
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.6e-82 310.5 365 52.1
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 1.6e-82 310.5 363 51.8
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 3.6e-82 309.3 359 50.4
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 4.7e-82 308.9 362 52.8
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 8.0e-82 308.1 359 49.9
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.0e-81 307.8 345 53.6
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 1.8e-81 307.0 365 49.0
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 2.0e-80 303.5 369 50.9
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.7e-79 300.4 375 49.9
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 8.2e-79 298.1 344 50.9
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 1.1e-78 297.7 336 51.5
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 1.4e-78 297.4 373 48.5
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 4.1e-78 295.8 370 50.3
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 7.0e-78 295.0 359 51.5
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 1.3e-76 290.8 432 43.5
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.1e-75 287.7 378 49.7
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 7.2e-75 285.0 374 45.7
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 4.7e-74 282.3 360 47.8
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 4.7e-74 282.3 370 47.3
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 8.8e-73 278.1 394 46.2
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 1.5e-72 277.3 361 46.3
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 7.5e-72 275.0 381 45.4
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 8.3e-71 271.6 365 47.1
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 1.8e-70 270.4 381 45.7
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 1.3e-68 264.2 361 46.5
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 3.8e-68 262.7 366 44.3
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 5.0e-68 262.3 431 40.4
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 6.5e-68 261.9 385 43.6
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 2.5e-67 260.0 366 44.3
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 1.2e-66 257.7 384 44.5
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 3.0e-65 253.1 382 43.7
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 3.0e-65 253.1 355 45.9
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 4.0e-65 252.7 382 43.7
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 1.3e-60 237.7 339 46.0
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 1.3e-60 237.7 376 40.4
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 1.3e-60 237.7 376 40.4
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 1.7e-60 237.3 376 41.8
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 1.7e-60 237.3 382 41.6
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 3.8e-60 236.1 376 41.0
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 8.6e-60 235.0 380 39.7
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 2.3e-57 226.9 376 39.9
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 1.2e-50 204.5 393 35.9
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 2.3e-49 200.3 343 40.8
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 6.8e-49 198.7 438 33.6
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 2.2e-47 193.7 361 35.5
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 1.4e-46 191.0 169 61.5
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 1.2e-45 188.0 171 59.6
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 1.8e-41 174.1 339 34.8
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 2.4e-38 163.7 138 61.6
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.0e-36 158.3 235 43.0
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 3.9e-36 156.4 119 68.9
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 1.5e-35 154.5 124 68.5
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 3.6e-34 149.8 151 57.0
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 6.4e-31 139.0 282 36.2
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 1.2e-29 134.8 207 44.9
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 1.7e-15 87.8 118 49.2
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 1.4e-14 84.7 53 73.6
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 3.0e-12 77.0 53 64.2
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 1.5e-11 74.7 209 28.2
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 2.8e-10 70.5 57 59.6
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 8.1e-10 68.9 59 59.3
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 1.4e-09 68.2 59 59.3
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea HOM05D002744 ORTHO05D006546 1.8e-09 67.8 59 57.6
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 2.4e-09 67.4 408 23.8
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 2.6e-08 63.9 51 62.7
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 7.6e-08 62.4 118 34.7
Cfa025636 Carpinus fangiana HOM05D002744 ORTHO05D006546 4.2e-06 56.6 102 37.3


User provided reference genes

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