Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1647.9 809 100.0
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1451.0 846 85.5
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1132.9 846 67.3
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1129.4 842 67.0
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1122.1 854 67.0
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1113.2 847 66.4
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1112.4 851 65.8
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1104.0 851 65.3
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1102.4 854 64.9
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1101.7 857 65.0
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1101.7 844 65.8
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1101.7 838 65.5
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1100.9 838 65.6
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1100.1 840 66.4
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1099.3 855 65.5
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1097.8 840 65.5
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1094.0 854 64.5
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1092.8 833 66.0
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1091.6 840 65.4
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1090.9 851 65.2
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1085.9 864 64.0
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1081.6 831 65.1
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1080.9 816 65.3
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1078.5 855 64.0
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1076.6 842 64.6
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 1.1e-311 1073.2 835 64.1
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 1.7e-311 1072.4 848 64.5
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 5.0e-311 1070.8 863 63.0
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 2.4e-310 1068.5 872 63.1
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 4.2e-310 1067.8 864 63.2
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 7.1e-310 1067.0 850 64.1
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 9.3e-310 1066.6 869 62.9
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 1.6e-309 1065.8 830 63.9
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 2.1e-309 1065.4 771 69.5
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 6.0e-309 1063.9 858 63.2
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 7.9e-309 1063.5 828 64.1
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 7.9e-309 1063.5 852 64.0
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 1.8e-308 1062.4 869 62.5
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 5.1e-308 1060.8 835 63.8
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 6.7e-308 1060.4 870 62.5
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 1.1e-307 1059.7 871 63.3
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 1.5e-307 1059.3 861 62.5
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 4.3e-307 1057.7 875 62.2
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 5.7e-307 1057.4 853 62.7
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 2.4e-305 1052.0 868 62.3
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 2.4e-305 1052.0 913 59.4
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.2e-304 1049.7 815 64.2
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 2.6e-304 1048.5 881 61.4
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 2.6e-304 1048.5 878 62.0
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 2.6e-304 1048.5 888 61.1
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 5.9e-304 1047.3 856 62.5
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 1.0e-303 1046.6 868 61.6
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 5.0e-303 1044.3 870 61.7
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 5.0e-303 1044.3 897 60.9
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 6.5e-303 1043.9 876 61.4
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 6.5e-303 1043.9 865 61.5
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 2.5e-302 1042.0 870 61.3
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 4.2e-302 1041.2 871 61.7
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 5.5e-302 1040.8 885 60.3
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 9.3e-302 1040.0 857 61.6
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 2.7e-301 1038.5 914 59.5
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 4.6e-301 1037.7 869 60.6
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 4.6e-301 1037.7 784 65.6
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 1.3e-300 1036.2 861 61.1
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 1.8e-300 1035.8 909 60.6
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 2.3e-300 1035.4 862 60.8
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 3.0e-300 1035.0 910 60.8
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 3.0e-300 1035.0 896 59.4
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 8.7e-300 1033.5 903 60.4
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 2.5e-299 1031.9 733 68.6
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 5.7e-299 1030.8 866 60.9
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 5.7e-299 1030.8 918 59.0
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 1.6e-298 1029.2 883 60.7
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 1.6e-298 1029.2 889 60.4
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 6.3e-298 1027.3 837 61.5
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 1.8e-297 1025.8 873 60.5
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 2.4e-297 1025.4 895 60.0
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 3.1e-297 1025.0 925 59.4
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 5.3e-297 1024.2 893 59.1
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 1.2e-296 1023.1 874 60.4
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 1.5e-296 1022.7 787 65.1
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 1.3e-295 1019.6 929 57.9
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 1.7e-295 1019.2 893 58.9
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 2.2e-295 1018.8 851 61.0
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 2.2e-295 1018.8 873 59.5
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 3.8e-295 1018.1 881 60.3
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 4.2e-294 1014.6 879 58.8
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 5.5e-294 1014.2 923 57.7
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 1.2e-293 1013.1 861 60.4
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 1.6e-293 1012.7 833 62.2
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 1.6e-293 1012.7 865 60.6
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 2.7e-293 1011.9 923 56.8
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 6.7e-292 1007.3 776 65.3
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 1.5e-291 1006.1 899 60.0
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 4.4e-291 1004.6 881 59.7
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 5.7e-291 1004.2 898 58.9
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 7.4e-291 1003.8 869 61.0
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 5.3e-289 997.7 881 59.4
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 6.9e-289 997.3 896 58.9
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 1.5e-288 996.1 896 58.8
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 1.0e-287 993.4 859 60.5
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 1.5e-283 979.5 903 58.3
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 2.8e-282 975.3 941 56.9
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 6.3e-282 974.2 939 55.1
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 1.1e-281 973.4 798 61.8
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 4.1e-281 971.5 845 60.0
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 1.3e-279 966.5 874 57.9
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 2.2e-279 965.7 874 58.0
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 7.2e-278 960.7 1011 51.8
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 2.0e-272 942.6 806 60.0
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 1.6e-264 916.4 861 55.9
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 4.7e-261 904.8 712 63.8
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 1.5e-259 899.8 702 65.0
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 9.2e-257 890.6 808 59.3
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 1.1e-244 850.5 591 69.9
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 3.7e-242 842.0 503 79.5
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 6.0e-240 834.7 892 51.9
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 5.2e-236 821.6 692 61.6
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 7.3e-230 801.2 831 50.3
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 4.1e-225 785.4 868 48.4
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 2.1e-224 783.1 726 58.0
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 1.6e-221 773.5 854 51.5
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 7.6e-219 764.6 958 47.9
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 7.3e-214 748.0 633 61.8
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 3.1e-164 583.2 372 74.7
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 4.5e-163 579.3 561 53.3
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.6e-160 570.9 380 71.6
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.4e-156 557.8 339 76.7
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 2.9e-154 550.1 350 75.4
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 3.0e-151 540.0 359 71.6
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 3.1e-148 530.0 468 60.0
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 2.0e-142 510.8 466 58.6
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 1.3e-130 471.5 784 37.8
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 2.1e-120 437.6 634 39.4
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 3.6e-120 436.8 509 50.1
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 3.1e-119 433.7 300 71.0
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 7.5e-118 429.1 948 32.8
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 1.9e-100 371.3 292 63.7
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 3.1e-87 327.4 484 37.4
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 2.0e-86 324.7 584 38.2
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 5.7e-81 306.6 485 40.0
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 3.8e-77 293.9 451 42.1
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 4.2e-68 263.8 165 76.4
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.1e-57 229.2 328 43.0
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 6.5e-45 186.8 327 38.5
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 3.7e-40 171.0 102 79.4
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 9.4e-36 156.4 106 67.0
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 2.0e-33 148.7 105 70.5
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 2.9e-24 118.2 153 47.1
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 8.6e-21 106.7 75 68.0
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 1.9e-20 105.5 66 68.2
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 4.7e-19 100.9 61 78.7
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 1.1e-12 79.7 70 60.0
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.3e-12 78.2 55 69.1
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 6.8e-10 70.5 56 58.9
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 1.5e-09 69.3 110 40.9
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.5e-09 69.3 40 87.5
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 4.9e-08 64.3 41 68.3
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 1.4e-07 62.8 97 41.2
Rhsim06G0121600 Rhododendron simsii HOM05D001476 ORTHO05D034934 9.2e-07 60.1 47 61.7


User provided reference genes

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