Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G4767 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 2.3e-140 502.3 269 100.0
CDE06G2711 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 1.2e-112 410.2 300 78.0
Nitab4.5_0005411g0120 Nicotiana tabacum HOM05D007245 ORTHO05D009049 5.5e-73 278.5 303 53.1
Nitab4.5_0005095g0010 Nicotiana tabacum HOM05D007245 ORTHO05D009049 4.6e-72 275.4 297 53.9
Gohir.A11G062100 Gossypium hirsutum HOM05D007245 ORTHO05D009049 1.0e-71 274.2 303 51.8
CSS0002235 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 3.0e-71 272.7 311 49.5
TAR629G1424 Trochodendron aralioides HOM05D007245 ORTHO05D009049 5.1e-71 271.9 306 52.3
CSS0018621 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 1.1e-70 270.8 315 48.9
Manes.11G073800 Manihot esculenta HOM05D007245 ORTHO05D009049 1.5e-70 270.4 302 51.7
Cc09_g07550 Coffea canephora HOM05D007245 ORTHO05D009049 2.5e-70 269.6 307 50.8
Oeu045577.1 Olea europaea HOM05D007245 ORTHO05D009049 9.7e-70 267.7 306 51.6
SGA_v2.0_scaffold47G17641 Striga asiatica HOM05D007245 ORTHO05D009049 9.7e-70 267.7 309 49.8
vmacro18400 Vaccinium macrocarpon HOM05D007245 ORTHO05D009049 2.2e-69 266.5 313 49.8
Nn3g16217 Nelumbo nucifera HOM05D007245 ORTHO05D009049 1.1e-68 264.2 301 49.8
Oeu050155.1 Olea europaea HOM05D007245 ORTHO05D009049 1.4e-68 263.8 306 51.0
Thecc.04G050800 Theobroma cacao HOM05D007245 ORTHO05D009049 1.4e-68 263.8 303 50.8
Dinv25610 Davidia involucrata HOM05D007245 ORTHO05D009049 2.4e-68 263.1 290 50.7
MSTRG.15573 Avicennia marina HOM05D007245 ORTHO05D009049 4.1e-68 262.3 304 49.3
Dinv33262 Davidia involucrata HOM05D007245 ORTHO05D009049 4.1e-68 262.3 280 52.9
HanXRQChr09g0245251 Helianthus annuus HOM05D007245 ORTHO05D009049 4.1e-68 262.3 306 48.4
Hma1.2p1_0421F.1_g149920 Hydrangea macrophylla HOM05D007245 ORTHO05D009049 4.1e-68 262.3 312 48.1
Lj7P619T29 Lonicera japonica HOM05D007245 ORTHO05D009049 4.1e-68 262.3 312 49.0
Sopen05g004430 Solanum pennellii HOM05D007245 ORTHO05D009049 4.1e-68 262.3 298 51.0
PGSC0003DMG400030518 Solanum tuberosum HOM05D007245 ORTHO05D009049 6.9e-68 261.5 302 50.0
Rhsim08G0037800 Rhododendron simsii HOM05D007245 ORTHO05D009049 9.1e-68 261.2 307 51.8
Sp6g30110 Schrenkiella parvula HOM05D007245 ORTHO05D009049 9.1e-68 261.2 307 49.5
Thhalv10014197m.g Eutrema salsugineum HOM05D007245 ORTHO05D009049 1.2e-67 260.8 308 49.0
PSO478G0086 Papaver somniferum HOM05D007245 ORTHO05D009049 1.2e-67 260.8 306 50.3
Lsat_1_v5_gn_2_60460 Lactuca sativa HOM05D007245 ORTHO05D009049 1.5e-67 260.4 311 47.6
CARHR199540 Cardamine hirsuta HOM05D007245 ORTHO05D009049 2.6e-67 259.6 315 48.9
PSO017G6414 Papaver somniferum HOM05D007245 ORTHO05D009049 5.9e-67 258.5 308 49.4
ATR0582G351 Amborella trichopoda HOM05D007245 ORTHO05D009049 7.7e-67 258.1 300 50.0
Sed0013025 Sechium edule HOM05D007245 ORTHO05D009049 1.3e-66 257.3 308 49.0
AT5G13890 Arabidopsis thaliana HOM05D007245 ORTHO05D009049 2.9e-66 256.1 312 47.8
Carub.0006s1208 Capsella rubella HOM05D007245 ORTHO05D009049 3.8e-66 255.8 311 48.6
Peaxi162Scf00950g00032 Petunia axillaris HOM05D007245 ORTHO05D009049 3.8e-66 255.8 293 49.5
Potri.002G237200 Populus trichocarpa HOM05D007245 ORTHO05D009049 5.0e-66 255.4 306 50.3
AL6G24530 Arabidopsis lyrata HOM05D007245 ORTHO05D009049 8.5e-66 254.6 312 47.8
Atru.chr6.2722 Acer truncatum HOM05D007245 ORTHO05D009049 1.4e-65 253.8 309 47.9
Haze_14957 Corylus avellana HOM05D007245 ORTHO05D009049 1.4e-65 253.8 310 49.0
BcaC04g24245 Brassica carinata HOM05D007245 ORTHO05D009049 3.2e-65 252.7 311 50.5
C09p63210 Brassica napus HOM05D007245 ORTHO05D009049 4.2e-65 252.3 307 48.5
BolC9t59157H Brassica oleracea HOM05D007245 ORTHO05D009049 4.2e-65 252.3 307 48.5
ClCG05G012490 Citrullus lanatus HOM05D007245 ORTHO05D009049 4.2e-65 252.3 318 46.9
Duzib147G1224 Durio zibethinus HOM05D007245 ORTHO05D009049 4.2e-65 252.3 303 48.8
ECA238G1127 Erigeron canadensis HOM05D007245 ORTHO05D009049 4.2e-65 252.3 306 48.0
Cpa.g.sc70.41 Carica papaya HOM05D007245 ORTHO05D009049 1.2e-64 250.8 316 49.7
BcaC04g19069 Brassica carinata HOM05D007245 ORTHO05D009049 2.1e-64 250.0 307 47.9
TWI32G1326 Tripterygium wilfordii HOM05D007245 ORTHO05D009049 2.1e-64 250.0 306 48.7
Aa31LG11G15470 Aethionema arabicum HOM05D007245 ORTHO05D009049 2.7e-64 249.6 308 47.7
THA.LOC104822428 Tarenaya hassleriana HOM05D007245 ORTHO05D009049 2.7e-64 249.6 308 48.7
A10p24470 Brassica napus HOM05D007245 ORTHO05D009049 3.6e-64 249.2 309 47.2
MELO3C014761.2 Cucumis melo HOM05D007245 ORTHO05D009049 3.6e-64 249.2 318 46.5
SalBow7G3959 Salvia bowleyana HOM05D007245 ORTHO05D009049 4.6e-64 248.8 309 48.5
BraA10t44512Z Brassica rapa HOM05D007245 ORTHO05D009049 6.1e-64 248.4 309 47.2
Actinidia37711 Actinidia chinensis HOM05D007245 ORTHO05D009049 7.9e-64 248.1 275 51.3
CiPaw.03G000500 Carya illinoinensis HOM05D007245 ORTHO05D009049 1.8e-63 246.9 304 51.3
SGA_v2.0_scaffold34G13684 Striga asiatica HOM05D007245 ORTHO05D009049 2.3e-63 246.5 309 47.9
Ciclev10016068m.g Citrus clementina HOM05D007245 ORTHO05D009049 3.0e-63 246.1 306 49.0
Gorai.007G071400 Gossypium raimondii HOM05D007245 ORTHO05D009049 8.8e-63 244.6 277 50.9
CsaV3_3G020030 Cucumis sativus L. HOM05D007245 ORTHO05D009049 1.1e-62 244.2 318 45.6
Gohir.D11G065900 Gossypium hirsutum HOM05D007245 ORTHO05D009049 1.1e-62 244.2 277 50.9
TAR374G0050 Trochodendron aralioides HOM05D000179 ORTHO05D009049 2.0e-62 243.4 301 49.5
Duzib187G0347 Durio zibethinus HOM05D007245 ORTHO05D009049 2.8e-61 239.6 303 48.5
Migut.K01486 Erythranthe guttata HOM05D007245 ORTHO05D009049 2.8e-61 239.6 311 46.0
Aqoxy2G01225 Aquilegia oxysepala HOM05D007245 ORTHO05D009049 1.1e-60 237.7 310 46.5
DCAR_000961 Daucus carota HOM05D007245 ORTHO05D009049 1.8e-60 236.9 309 46.3
Lalb_Chr24g0402921 Lupinus albus HOM05D007245 ORTHO05D009049 1.8e-60 236.9 310 46.8
CANSAT64G0979 Cannabis sativa HOM05D007245 ORTHO05D009049 6.9e-60 235.0 311 45.7
CAN.G1489.19 Capsicum annuum HOM05D007245 ORTHO05D009049 6.9e-60 235.0 302 45.7
MD17G1004200 Malus domestica HOM05D007245 ORTHO05D009049 2.0e-59 233.4 315 45.7
Glyma.19G106200 Glycine max HOM05D007245 ORTHO05D009049 4.5e-59 232.3 306 45.4
MD09G1001100 Malus domestica HOM05D007245 ORTHO05D009049 5.9e-59 231.9 315 45.1
Prupe.7G011800 Prunus persica HOM05D007245 ORTHO05D009049 7.7e-59 231.5 314 44.6
PGR142G1730 Punica granatum HOM05D007245 ORTHO05D009049 1.7e-58 230.3 312 45.8
QL02p068579 Quercus lobata HOM05D007245 ORTHO05D009049 1.7e-58 230.3 276 48.2
Manes.04G095000 Manihot esculenta HOM05D007245 ORTHO05D009049 2.2e-58 229.9 302 46.7
Ah.03g136550 Amaranthus hybridus HOM05D001378 ORTHO05D001249 6.5e-58 228.4 285 47.4
Lj1g0022763 Lotus japonicus HOM05D007245 ORTHO05D009049 1.1e-57 227.6 307 45.6
Sed0008898 Sechium edule HOM05D007245 ORTHO05D009049 3.2e-57 226.1 307 44.0
RcHm_v2.0_Chr2g0176701 Rosa chinensis HOM05D007245 ORTHO05D009049 9.4e-57 224.6 309 43.4
Sc03g0005330 Simmondsia chinensis HOM05D007245 ORTHO05D009049 9.4e-57 224.6 300 44.7
MBI11_g03703_MAGBIO Magnolia biondii HOM05D007245 ORTHO05D009049 1.0e-55 221.1 312 45.8
SHI23073 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-55 220.7 302 45.7
RcHm_v2.0_Chr2g0137761 Rosa chinensis HOM05D007245 ORTHO05D009049 3.9e-55 219.2 308 45.5
FvH4_6g31080 Fragaria vesca HOM05D007245 ORTHO05D009049 1.1e-54 217.6 309 44.7
FAN05G2831 Fragaria x ananassa HOM05D007245 ORTHO05D009049 1.1e-54 217.6 309 44.7
Phvul.001G099200 Phaseolus vulgaris HOM05D007245 ORTHO05D009049 1.3e-53 214.2 306 44.8
VMungo1383G3535 Vigna mungo HOM05D007245 ORTHO05D009049 9.1e-52 208.0 306 42.8
TPR.G31664 Trifolium pratense HOM05D007245 ORTHO05D009049 2.0e-51 206.8 307 42.7
unitig_0.g2407 Utricularia gibba HOM05D007245 ORTHO05D009049 4.2e-49 199.1 271 45.0
Sabra02G0180800 Salix brachista HOM05D007245 ORTHO05D009049 1.6e-48 197.2 275 44.7
Medtr7g084610 Medicago truncatula HOM05D007245 ORTHO05D009049 2.3e-47 193.4 308 41.6
COL.COLO4_13398 Corchorus olitorius HOM05D005263 ORTHO05D006891 6.3e-37 158.7 114 67.5
SEGI_38415 Sequoiadendron giganteum HOM05D007245 ORTHO05D009049 3.1e-36 156.4 283 37.5
Mapoly0103s0043 Marchantia polymorpha HOM05D007245 ORTHO05D009049 5.4e-36 155.6 294 35.7
HPP92_006441 Vanilla planifolia HOM05D007245 ORTHO05D009049 1.1e-33 147.9 319 39.2
AUR62042868 Chenopodium quinoa HOM05D007245 ORTHO05D009049 6.1e-32 142.1 115 57.4
Ca_08230_v3 Cicer arietinum L. HOM05D007245 ORTHO05D009049 1.5e-30 137.5 116 59.5
GSVIVG01032953001 Vitis vinifera HOM05D007245 ORTHO05D009049 9.8e-30 134.8 152 52.0
Psat3g091920 Pisum sativum HOM05D007245 ORTHO05D009049 6.3e-29 132.1 225 41.3
SMO329G0038 Selaginella moellendorffii HOM05D007245 ORTHO05D009049 3.5e-27 126.3 297 32.0
Pp3c8_3270 Physcomitrium patens HOM05D007245 ORTHO05D009049 7.8e-27 125.2 295 31.5
AagrBONN_evm.TU.Sc2ySwM_369.440 Anthoceros agrestis HOM05D007245 ORTHO05D009049 1.5e-25 120.9 282 33.3
Glyma.16G045802 Glycine max HOM05D007245 ORTHO05D009049 3.4e-22 109.8 150 45.3
Pp3c4_3800 Physcomitrium patens HOM05D007245 ORTHO05D009049 3.0e-18 96.7 201 33.8
Pp3c10_19560 Physcomitrium patens HOM05D007245 ORTHO05D009049 5.0e-18 95.9 289 28.4
Solyc05g008590.4 Solanum lycopersicum HOM05D007245 ORTHO05D009049 5.0e-18 95.9 116 49.1
QL06p020732 Quercus lobata HOM05D008048 ORTHO05D010199 7.5e-14 82.0 278 28.4
Psat0s2487g0040 Pisum sativum HOM05D007245 ORTHO05D009049 6.4e-13 79.0 70 55.7
Pp3c12_14270 Physcomitrium patens HOM05D007245 ORTHO05D009049 1.9e-12 77.4 214 29.4
PGSC0003DMG400017154 Solanum tuberosum HOM05D008048 ORTHO05D010199 3.2e-12 76.6 278 27.7
SalBow3G4414 Salvia bowleyana HOM05D008048 ORTHO05D010199 4.1e-12 76.3 254 31.9
Zm00001eb113550 Zea mays HOM05D007245 ORTHO05D009049 7.0e-12 75.5 113 38.1
Peaxi162Scf00033g00292 Petunia axillaris HOM05D008048 ORTHO05D010199 9.2e-12 75.1 289 27.3
Sopen09g033500 Solanum pennellii HOM05D008048 ORTHO05D010199 1.6e-11 74.3 278 28.4
Hma1.2p1_0385F.1_g141480 Hydrangea macrophylla HOM05D008048 ORTHO05D010199 3.5e-11 73.2 261 27.2
PGR004G1266 Punica granatum HOM05D008048 ORTHO05D010199 4.6e-11 72.8 252 27.4
Lsat_1_v5_gn_6_68700 Lactuca sativa HOM05D008048 ORTHO05D010199 6.0e-11 72.4 266 27.8
TAR362G0870 Trochodendron aralioides HOM05D008048 ORTHO05D010199 6.0e-11 72.4 268 25.7
Migut.G00487 Erythranthe guttata HOM05D008048 ORTHO05D010199 1.0e-10 71.6 265 28.3
MBI07_g18713_MAGBIO Magnolia biondii HOM05D008048 ORTHO05D010199 1.7e-10 70.9 290 24.8
Cfa014771 Carpinus fangiana HOM05D008048 ORTHO05D010199 2.3e-10 70.5 290 25.2
Nn1g02915 Nelumbo nucifera HOM05D008048 ORTHO05D010199 2.3e-10 70.5 260 28.1
CsaV3_2G012520 Cucumis sativus L. HOM05D008048 ORTHO05D010199 5.0e-10 69.3 270 26.3
CAN.G220.87 Capsicum annuum HOM05D008048 ORTHO05D010199 1.5e-09 67.8 260 26.2
MELO3C023035.2 Cucumis melo HOM05D008048 ORTHO05D010199 1.5e-09 67.8 271 26.9
Medtr4g068340 Medicago truncatula HOM05D001193 ORTHO05D001016 4.3e-09 66.2 292 27.7
Dinv29814 Davidia involucrata HOM05D008048 ORTHO05D010199 5.6e-09 65.9 263 26.6
Os11g0534100 Oryza sativa ssp. japonica HOM05D007245 ORTHO05D009049 5.6e-09 65.9 104 38.5
CiPaw.02G108000 Carya illinoinensis HOM05D008048 ORTHO05D010199 7.3e-09 65.5 224 28.1
Aqoxy5G00167 Aquilegia oxysepala HOM05D008048 ORTHO05D010199 9.5e-09 65.1 265 24.9
Haze_11446 Corylus avellana HOM05D008048 ORTHO05D010199 1.2e-08 64.7 268 25.0
Phvul.002G131900 Phaseolus vulgaris HOM05D001193 ORTHO05D001016 1.6e-08 64.3 278 27.3
COL.COLO4_15948 Corchorus olitorius HOM05D008048 ORTHO05D010199 3.6e-08 63.2 246 25.6
Sed0019169 Sechium edule HOM05D008048 ORTHO05D010199 3.6e-08 63.2 253 25.3
Atru.chr4.1935 Acer truncatum HOM05D008048 ORTHO05D010199 4.7e-08 62.8 268 25.7
Ah.04g155360 Amaranthus hybridus HOM05D008048 ORTHO05D010199 4.7e-08 62.8 268 23.9
CAN.G220.88 Capsicum annuum HOM05D008048 ORTHO05D010199 4.7e-08 62.8 182 28.6
Potri.010G067000 Populus trichocarpa HOM05D008048 ORTHO05D010199 4.7e-08 62.8 291 26.1
Sc25g0003600 Simmondsia chinensis HOM05D008048 ORTHO05D010199 4.7e-08 62.8 259 26.3
Ca_20816_v3 Cicer arietinum L. HOM05D001193 ORTHO05D001016 6.2e-08 62.4 292 27.1
QL12p000933 Quercus lobata HOM05D001193 ORTHO05D001016 6.2e-08 62.4 258 26.4
Actinidia20832 Actinidia chinensis HOM05D008048 ORTHO05D010199 1.1e-07 61.6 263 26.6
Nitab4.5_0002709g0050 Nicotiana tabacum HOM05D008048 ORTHO05D010199 1.1e-07 61.6 203 24.6
MSTRG.4161 Avicennia marina HOM05D008048 ORTHO05D010199 1.4e-07 61.2 243 27.6
Manes.15G044600 Manihot esculenta HOM05D008048 ORTHO05D010199 1.4e-07 61.2 251 25.1
Mapoly0016s0059 Marchantia polymorpha HOM05D001193 ORTHO05D001016 1.4e-07 61.2 263 27.0
Gohir.A01G025700 Gossypium hirsutum HOM05D008048 ORTHO05D010199 1.8e-07 60.8 255 24.7
RcHm_v2.0_Chr4g0394961 Rosa chinensis HOM05D008048 ORTHO05D010199 2.3e-07 60.5 248 26.2
SMO329G0094 Selaginella moellendorffii HOM05D001193 ORTHO05D001016 2.3e-07 60.5 293 26.6
arahy.Tifrunner.gnm1.ann1.EFX8YV Arachis hypogaea HOM05D001193 ORTHO05D001016 3.1e-07 60.1 281 28.5
Rhsim04G0173500 Rhododendron simsii HOM05D008048 ORTHO05D010199 3.1e-07 60.1 242 25.6
VMungo1215G0728 Vigna mungo HOM05D001193 ORTHO05D001016 3.1e-07 60.1 278 27.0
Gorai.002G026300 Gossypium raimondii HOM05D008048 ORTHO05D010199 4.0e-07 59.7 255 24.3
Oeu002289.1 Olea europaea HOM05D008048 ORTHO05D010199 4.0e-07 59.7 173 29.5
unitig_0.g2216 Utricularia gibba HOM05D001193 ORTHO05D001016 4.0e-07 59.7 196 27.0
ATR0736G121 Amborella trichopoda HOM05D008048 ORTHO05D010199 5.2e-07 59.3 103 35.0
arahy.Tifrunner.gnm1.ann1.PM0FQ0 Arachis hypogaea HOM05D001193 ORTHO05D001016 5.2e-07 59.3 281 28.1
AUR62002183 Chenopodium quinoa HOM05D008048 ORTHO05D010199 5.2e-07 59.3 280 24.3
Potri.008G170900 Populus trichocarpa HOM05D008048 ORTHO05D010199 5.2e-07 59.3 291 24.7
Sabra01G0102400 Salix brachista HOM05D001193 ORTHO05D001016 5.2e-07 59.3 270 26.7
Sabra10G0040500 Salix brachista HOM05D008048 ORTHO05D010199 5.2e-07 59.3 287 25.1
Prupe.1G046300 Prunus persica HOM05D008048 ORTHO05D010199 6.8e-07 58.9 274 25.2
Glyma.11G123900 Glycine max HOM05D001193 ORTHO05D001016 8.9e-07 58.5 250 28.4
DCAR_027338 Daucus carota HOM05D008048 ORTHO05D010199 1.2e-06 58.2 183 26.8
TPR.G10223 Trifolium pratense HOM05D001193 ORTHO05D001016 1.5e-06 57.8 293 25.9
Actinidia14752 Actinidia chinensis HOM05D001193 ORTHO05D001016 2.0e-06 57.4 279 26.2
Migut.D02534 Erythranthe guttata HOM05D001193 ORTHO05D001016 2.0e-06 57.4 269 26.4
Gohir.D01G023415 Gossypium hirsutum HOM05D008048 ORTHO05D010199 2.6e-06 57.0 255 24.3
Mapoly0090s0038 Marchantia polymorpha HOM05D001193 ORTHO05D001016 2.6e-06 57.0 294 23.1
Actinidia18151 Actinidia chinensis HOM05D001193 ORTHO05D001016 3.4e-06 56.6 262 25.6
TWI73G0695 Tripterygium wilfordii HOM05D008048 ORTHO05D010199 3.4e-06 56.6 253 26.1
AagrBONN_evm.TU.Sc2ySwM_117.4111 Anthoceros agrestis HOM05D001193 ORTHO05D001016 4.4e-06 56.2 269 25.7
Atru.chr5.2874 Acer truncatum HOM05D001193 ORTHO05D001016 5.8e-06 55.8 248 27.0
Duzib151G0082 Durio zibethinus HOM05D008048 ORTHO05D010199 5.8e-06 55.8 269 24.2
Ciclev10005562m.g Citrus clementina HOM05D008048 ORTHO05D010199 9.9e-06 55.1 261 25.7
Medtr1g045060 Medicago truncatula HOM05D008048 ORTHO05D010199 9.9e-06 55.1 245 25.3


User provided reference genes

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