Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 7.6e-160 567.4 348 100.0
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 5.0e-143 511.5 343 92.7
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 4.0e-92 342.4 346 57.5
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 9.8e-91 337.8 343 56.9
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 4.1e-89 332.4 335 66.3
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 7.1e-89 331.6 337 64.7
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 8.6e-87 324.7 345 55.7
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 9.5e-86 321.2 336 56.2
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.2e-85 320.9 345 54.2
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 1.6e-85 320.5 335 55.5
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 2.1e-85 320.1 345 53.3
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 4.7e-85 318.9 344 53.2
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 6.2e-85 318.5 335 65.7
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.1e-84 317.8 335 62.1
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.1e-84 317.8 335 62.1
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 1.4e-84 317.4 345 53.0
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 5.2e-84 315.5 345 52.5
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 6.8e-84 315.1 345 55.7
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 3.4e-83 312.8 342 52.3
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 3.4e-83 312.8 345 56.8
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 7.6e-83 311.6 337 53.7
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 1.3e-82 310.8 344 50.9
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 1.3e-82 310.8 321 53.0
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 1.7e-82 310.5 332 64.5
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 3.7e-82 309.3 318 59.1
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 3.7e-82 309.3 342 52.0
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 4.9e-82 308.9 346 53.2
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.1e-81 307.8 345 50.7
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 1.1e-81 307.8 321 54.8
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.4e-81 307.4 335 51.9
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 1.4e-81 307.4 340 50.6
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 1.9e-81 307.0 321 56.1
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 3.2e-81 306.2 343 50.7
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 7.1e-81 305.1 332 53.3
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 1.2e-80 304.3 332 52.7
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 1.6e-80 303.9 345 50.7
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 1.6e-80 303.9 334 51.8
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.6e-80 303.9 316 52.2
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 2.1e-80 303.5 335 51.9
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 2.7e-80 303.1 340 62.9
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 2.7e-80 303.1 343 51.0
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 2.7e-80 303.1 340 52.4
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 7.8e-80 301.6 346 52.6
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 7.8e-80 301.6 331 55.9
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.0e-79 301.2 320 53.1
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 1.0e-79 301.2 335 49.9
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 2.3e-79 300.1 327 53.5
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.3e-79 300.1 340 60.0
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 3.0e-79 299.7 340 62.6
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 5.1e-79 298.9 335 49.3
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 1.9e-78 297.0 314 54.5
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.9e-78 297.0 315 54.6
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 3.3e-78 296.2 343 51.9
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 4.3e-78 295.8 335 54.0
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 5.6e-78 295.4 321 53.6
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 5.6e-78 295.4 321 51.7
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 7.3e-78 295.0 340 50.9
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 1.6e-77 293.9 327 52.6
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 1.6e-77 293.9 343 49.0
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 2.1e-77 293.5 336 49.7
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 2.1e-77 293.5 340 50.6
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 2.1e-77 293.5 342 50.3
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 6.2e-77 292.0 345 48.4
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 8.1e-77 291.6 340 50.3
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.1e-76 291.2 341 54.8
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 1.4e-76 290.8 321 51.4
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.4e-76 290.0 340 50.0
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 3.1e-76 289.7 324 52.2
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.1e-76 289.7 338 50.3
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 5.2e-76 288.9 345 48.1
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 8.9e-76 288.1 340 63.2
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 1.5e-75 287.3 335 61.8
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 1.5e-75 287.3 350 50.3
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 2.6e-75 286.6 329 56.2
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 1.7e-74 283.9 321 50.5
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 1.9e-73 280.4 345 52.5
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 1.2e-72 277.7 343 46.6
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 1.2e-72 277.7 370 51.9
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 2.1e-72 276.9 343 49.3
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 2.7e-72 276.6 335 59.4
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 1.0e-71 274.6 335 49.3
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 1.0e-71 274.6 321 60.1
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 1.3e-71 274.2 332 56.3
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 2.3e-71 273.5 343 54.2
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 3.0e-71 273.1 315 58.7
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.9e-71 272.7 321 57.3
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.9e-71 272.7 321 57.3
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 6.6e-71 271.9 337 54.6
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 1.1e-70 271.2 331 59.5
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 3.3e-70 269.6 333 57.1
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.8e-69 266.5 335 53.7
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 2.8e-69 266.5 321 48.3
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 9.0e-68 261.5 332 53.6
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 4.4e-67 259.2 319 48.3
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 1.1e-65 254.6 335 47.2
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 1.4e-65 254.2 343 45.5
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 5.4e-65 252.3 332 52.7
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 1.7e-63 247.3 321 47.4
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 5.1e-63 245.7 250 54.0
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 8.7e-63 245.0 322 50.3
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.9e-62 243.8 322 45.3
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 3.3e-62 243.0 322 46.6
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 1.3e-61 241.1 320 48.8
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 6.2e-61 238.8 330 45.2
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.4e-60 237.7 335 43.9
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 9.0e-60 235.0 321 49.2
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 6.4e-58 228.8 228 53.9
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 6.4e-58 228.8 225 52.4
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.4e-57 227.6 318 45.3
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 1.9e-57 227.3 340 52.4
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.2e-57 226.5 341 42.5
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.2e-56 224.6 242 50.0
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 3.0e-55 219.9 291 46.4
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 7.4e-54 215.3 316 42.7
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 6.9e-52 208.8 334 40.1
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.6e-51 206.8 346 41.6
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 3.4e-51 206.5 322 42.9
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 5.8e-51 205.7 344 41.6
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 1.0e-50 204.9 322 48.4
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 4.9e-50 202.6 346 40.2
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 5.5e-49 199.1 306 43.8
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 7.9e-48 195.3 232 47.4
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.8e-47 194.1 343 40.2
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 6.7e-47 192.2 341 40.5
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 6.7e-47 192.2 341 40.5
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 6.7e-47 192.2 337 47.5
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 1.1e-46 191.4 329 41.3
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.5e-46 191.0 287 44.6
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 1.5e-46 191.0 341 40.2
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 7.4e-46 188.7 341 39.9
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 1.3e-45 188.0 330 48.5
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 2.1e-45 187.2 321 48.6
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 6.3e-45 185.7 326 39.0
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 1.8e-44 184.1 309 42.1
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.2e-43 181.4 345 35.1
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 1.5e-43 181.0 331 45.3
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 2.6e-43 180.3 229 45.9
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 3.8e-42 176.4 326 38.7
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 5.0e-42 176.0 329 38.0
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 2.5e-41 173.7 327 36.7
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 1.2e-40 171.4 319 38.2
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 6.1e-40 169.1 341 38.1
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 8.7e-39 165.2 302 38.7
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 8.7e-39 165.2 320 36.2
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 1.9e-38 164.1 242 43.8
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 7.4e-38 162.2 302 39.4
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 7.4e-38 162.2 290 39.3
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 9.7e-38 161.8 319 37.3
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 1.1e-36 158.3 223 45.3
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 2.4e-36 157.1 314 37.9
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 4.1e-36 156.4 320 36.2
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 4.1e-36 156.4 311 35.0
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 9.0e-36 155.2 319 35.1
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 7.7e-35 152.1 349 35.8
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 1.4e-33 147.9 182 43.4
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 4.8e-29 132.9 248 39.1
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 5.0e-26 122.9 156 63.5
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 2.5e-25 120.6 173 45.7
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 4.2e-25 119.8 202 42.1
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 7.2e-25 119.0 305 32.8
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 4.7e-24 116.3 190 41.6
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 4.7e-24 116.3 136 52.2
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 5.7e-22 109.4 142 46.5
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.9e-17 94.4 316 29.1
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 1.4e-12 78.2 55 74.5
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 7.0e-12 75.9 283 27.9
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 2.0e-11 74.3 50 78.0
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 3.0e-07 60.5 143 36.4
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 2.6e-06 57.4 297 37.7
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 7.5e-06 55.8 297 25.9


User provided reference genes

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