Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 1.5e-234 815.8 414 100.0
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 1.6e-193 679.5 446 81.6
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 1.9e-149 533.1 444 64.2
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 7.0e-144 514.6 444 61.7
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 1.2e-143 513.8 444 61.7
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 3.5e-143 512.3 444 61.7
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 2.9e-142 509.2 417 65.2
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 5.0e-142 508.4 444 61.5
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 2.5e-141 506.1 444 61.3
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 1.4e-139 500.4 444 61.5
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 8.8e-139 497.7 444 59.5
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 4.4e-138 495.4 444 59.2
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 7.5e-138 494.6 444 60.4
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.7e-137 493.4 443 61.4
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 3.7e-137 492.3 445 59.3
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 3.7e-137 492.3 444 60.1
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 1.1e-136 490.7 444 59.7
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 1.1e-136 490.7 444 60.4
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 5.4e-136 488.4 444 60.4
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 5.4e-136 488.4 444 59.5
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 7.0e-136 488.0 444 59.7
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 9.2e-136 487.6 447 59.5
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.2e-135 487.3 432 61.1
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.0e-135 486.5 444 60.1
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.7e-135 486.1 444 59.2
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 1.0e-134 484.2 444 59.7
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 1.0e-134 484.2 444 59.0
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.3e-134 483.8 444 59.7
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 1.3e-134 483.8 447 59.1
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 2.3e-134 483.0 447 58.8
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 3.8e-134 482.3 474 57.8
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 3.8e-134 482.3 444 59.7
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 5.0e-134 481.9 444 59.7
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 6.6e-134 481.5 444 58.6
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 6.6e-134 481.5 444 59.2
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 6.6e-134 481.5 444 59.0
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 8.6e-134 481.1 444 58.6
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 1.1e-133 480.7 447 58.4
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.5e-133 480.3 448 59.4
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 1.5e-133 480.3 448 58.9
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 3.3e-133 479.2 445 59.6
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 5.6e-133 478.4 444 58.8
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 7.3e-133 478.0 446 58.7
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.8e-132 476.1 451 57.9
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 3.6e-132 475.7 444 56.8
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 4.7e-132 475.3 443 58.0
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 6.1e-132 474.9 453 57.6
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 8.0e-132 474.6 443 57.6
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 8.0e-132 474.6 446 60.1
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 1.0e-131 474.2 445 58.7
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 1.8e-131 473.4 443 59.1
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 2.3e-131 473.0 443 58.5
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 2.3e-131 473.0 444 59.0
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 8.9e-131 471.1 444 58.6
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 1.5e-130 470.3 448 56.9
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 2.0e-130 469.9 443 57.3
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 2.0e-130 469.9 421 60.8
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 5.7e-130 468.4 444 57.4
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 1.3e-129 467.2 447 56.4
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 2.9e-129 466.1 444 56.8
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 2.9e-129 466.1 444 57.2
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 3.7e-129 465.7 444 57.0
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 6.4e-129 464.9 444 56.8
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 1.8e-128 463.4 475 54.1
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 1.8e-128 463.4 444 56.8
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 5.4e-128 461.8 444 56.5
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 2.0e-127 459.9 447 56.2
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 1.7e-126 456.8 447 55.7
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 5.0e-126 455.3 486 52.7
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 1.1e-125 454.1 447 56.6
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 7.3e-125 451.4 444 57.0
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 3.6e-124 449.1 445 56.9
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 6.2e-124 448.4 446 55.8
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 1.0e-123 447.6 444 56.1
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 1.4e-123 447.2 447 55.3
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 1.4e-123 447.2 422 58.1
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 2.3e-123 446.4 447 55.3
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 3.1e-123 446.0 424 56.8
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 1.5e-122 443.7 445 54.6
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 1.5e-122 443.7 448 55.4
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 2.0e-122 443.4 444 56.5
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 9.8e-122 441.0 448 56.9
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 2.9e-121 439.5 385 61.3
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 3.7e-121 439.1 416 57.9
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 8.3e-121 438.0 447 54.8
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 1.1e-120 437.6 446 54.0
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 7.0e-120 434.9 450 55.3
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 3.9e-118 429.1 444 54.5
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 8.6e-118 427.9 446 54.0
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 2.5e-117 426.4 448 55.8
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 3.3e-117 426.0 448 54.9
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 3.6e-116 422.5 440 53.2
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 4.0e-115 419.1 380 60.3
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 2.0e-114 416.8 448 52.0
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 2.6e-114 416.4 448 52.0
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 4.4e-114 415.6 448 53.3
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 7.5e-114 414.8 448 52.9
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 7.5e-114 414.8 446 50.9
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 1.3e-113 414.1 448 53.6
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 1.7e-113 413.7 448 53.8
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 3.7e-113 412.5 448 53.6
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 6.4e-113 411.8 445 53.7
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 1.1e-112 411.0 447 52.3
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 1.9e-112 410.2 444 52.5
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 1.6e-111 407.1 448 50.2
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 7.8e-111 404.8 449 53.0
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 1.7e-110 403.7 449 52.8
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 5.1e-110 402.1 448 53.1
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 7.3e-109 398.3 444 52.3
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 1.8e-107 393.7 475 48.8
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 1.5e-106 390.6 447 51.9
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 1.5e-106 390.6 457 50.3
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 4.4e-106 389.0 335 61.8
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 2.9e-105 386.3 444 51.4
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 2.9e-105 386.3 444 51.4
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 2.9e-105 386.3 444 52.5
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 4.9e-105 385.6 444 50.9
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 1.9e-104 383.6 444 51.1
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 3.2e-104 382.9 444 50.9
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 7.1e-104 381.7 448 50.2
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 9.2e-104 381.3 337 61.4
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 4.6e-103 379.0 448 50.0
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 6.0e-103 378.6 448 49.1
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 1.1e-101 374.4 406 53.7
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 4.3e-101 372.5 410 54.4
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 1.1e-96 357.8 457 45.5
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 4.3e-93 345.9 418 51.4
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 1.1e-88 331.3 362 52.5
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.1e-80 304.7 281 59.8
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 2.7e-79 300.1 230 68.3
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 3.0e-78 296.6 330 50.9
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 2.5e-77 293.5 230 67.8
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 3.1e-75 286.6 428 41.8
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 4.5e-66 256.1 378 43.7
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 3.2e-64 250.0 383 43.6
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 5.3e-51 206.1 439 34.6
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 9.1e-51 205.3 307 44.6
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 2.0e-50 204.1 158 67.1
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 5.2e-46 189.5 216 52.3
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 1.7e-44 184.5 378 32.5
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 1.7e-41 174.5 367 37.9
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.2e-41 174.1 212 49.1
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 9.4e-40 168.7 216 47.7
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 7.5e-37 159.1 139 60.4
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 1.3e-36 158.3 287 40.8
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 1.6e-31 141.4 215 44.2
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 4.5e-26 123.2 248 36.7
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 4.4e-21 106.7 130 50.8
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 3.7e-20 103.6 158 42.4
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 5.4e-19 99.8 120 45.8
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 1.3e-17 95.1 125 42.4
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 7.3e-16 89.4 101 52.5
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 2.1e-15 87.8 75 61.3
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 2.1e-15 87.8 75 61.3
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 2.7e-10 70.9 59 54.2
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 4.6e-10 70.1 53 73.6
Ah.00g000740 Amaranthus hybridus HOM05D002716 ORTHO05D003324 2.8e-07 60.8 173 24.3
AL2G36010 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 1.1e-06 58.9 173 24.9
AT1G75990 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 1.8e-06 58.2 173 24.3
Carub.0002s2288 Capsella rubella HOM05D002716 ORTHO05D003324 2.3e-06 57.8 173 24.3
Dinv09944 Davidia involucrata HOM05D002612 ORTHO05D002859 2.3e-06 57.8 48 56.2
SGA_v2.0_scaffold80G25836 Striga asiatica HOM05D002716 ORTHO05D003324 2.3e-06 57.8 173 23.7
EL10As11g23980 Beta vulgaris HOM05D004649 ORTHO05D005446 6.8e-06 56.2 37 70.3
BcaC08g47308 Brassica carinata HOM05D002716 ORTHO05D003324 6.8e-06 56.2 169 23.7
A07p41500 Brassica napus HOM05D002716 ORTHO05D003324 6.8e-06 56.2 169 23.7
C06p49910 Brassica napus HOM05D002716 ORTHO05D003324 6.8e-06 56.2 169 23.7
BolC6t40029H Brassica oleracea HOM05D002716 ORTHO05D003324 6.8e-06 56.2 169 23.7
BraA07t31682Z Brassica rapa HOM05D002716 ORTHO05D003324 6.8e-06 56.2 169 23.7
Sp5g31110 Schrenkiella parvula HOM05D002716 ORTHO05D003324 6.8e-06 56.2 173 23.7
CARHR069530 Cardamine hirsuta HOM05D002716 ORTHO05D003324 8.9e-06 55.8 173 24.3
Thhalv10007479m.g Eutrema salsugineum HOM05D002716 ORTHO05D003324 8.9e-06 55.8 173 23.7


User provided reference genes

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