Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 0.0e+00 1088.2 587 100.0
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 4.3e-232 808.1 641 75.2
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 5.1e-47 193.4 196 54.6
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 5.6e-46 189.9 197 54.3
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 1.2e-45 188.7 299 42.1
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 1.2e-45 188.7 191 54.5
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.6e-45 188.3 352 40.3
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 2.8e-45 187.6 187 53.5
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 2.8e-45 187.6 187 55.1
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 3.6e-45 187.2 213 50.7
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 4.7e-45 186.8 344 39.8
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 4.7e-45 186.8 198 51.0
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 8.1e-45 186.0 213 51.6
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 1.1e-44 185.7 188 54.3
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 1.1e-44 185.7 188 54.3
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 1.1e-44 185.7 205 50.7
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 1.1e-44 185.7 205 50.7
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 1.4e-44 185.3 338 38.8
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 1.4e-44 185.3 231 45.9
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 1.4e-44 185.3 349 38.7
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 1.4e-44 185.3 184 53.8
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 1.8e-44 184.9 177 56.5
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 2.3e-44 184.5 252 45.6
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 3.1e-44 184.1 179 55.9
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 4.0e-44 183.7 171 60.2
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 4.0e-44 183.7 348 39.9
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 4.0e-44 183.7 340 39.4
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 4.0e-44 183.7 220 49.5
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 5.2e-44 183.3 332 39.2
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 6.8e-44 183.0 203 51.7
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 8.9e-44 182.6 298 44.0
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 8.9e-44 182.6 204 52.5
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 8.9e-44 182.6 200 52.5
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 8.9e-44 182.6 336 39.6
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 8.9e-44 182.6 330 41.2
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 1.5e-43 181.8 331 41.1
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 2.0e-43 181.4 151 58.3
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 2.0e-43 181.4 174 55.7
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 3.4e-43 180.6 193 51.3
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 3.4e-43 180.6 344 40.7
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 4.4e-43 180.3 317 38.8
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 4.4e-43 180.3 313 39.9
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 5.8e-43 179.9 379 37.2
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 9.9e-43 179.1 353 38.8
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 9.9e-43 179.1 174 56.3
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 1.3e-42 178.7 176 52.8
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 1.3e-42 178.7 187 50.8
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 1.7e-42 178.3 309 41.4
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 2.2e-42 177.9 344 38.7
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 2.2e-42 177.9 300 40.3
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 2.2e-42 177.9 177 52.5
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 2.2e-42 177.9 186 53.8
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 2.2e-42 177.9 197 50.8
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 2.2e-42 177.9 193 52.3
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 2.9e-42 177.6 199 50.8
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 2.9e-42 177.6 196 53.1
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 3.8e-42 177.2 197 54.3
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 3.8e-42 177.2 196 53.6
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 3.8e-42 177.2 202 50.0
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 4.9e-42 176.8 310 40.3
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 4.9e-42 176.8 519 35.8
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 6.4e-42 176.4 291 41.9
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 6.4e-42 176.4 156 57.1
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 6.4e-42 176.4 156 57.1
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 6.4e-42 176.4 198 50.5
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 8.4e-42 176.0 308 40.3
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 1.4e-41 175.3 175 53.1
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 1.9e-41 174.9 177 52.5
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 1.9e-41 174.9 177 52.5
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 1.9e-41 174.9 187 52.9
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 1.9e-41 174.9 190 48.9
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 1.9e-41 174.9 379 36.9
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 2.4e-41 174.5 290 41.4
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 2.4e-41 174.5 155 57.4
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 3.2e-41 174.1 172 54.7
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 3.2e-41 174.1 286 39.5
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 4.1e-41 173.7 187 52.4
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 4.1e-41 173.7 197 48.7
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 5.4e-41 173.3 156 57.7
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 7.1e-41 172.9 187 54.0
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 7.1e-41 172.9 283 39.9
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 7.1e-41 172.9 453 37.7
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 9.2e-41 172.6 207 49.3
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 9.2e-41 172.6 238 44.5
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 1.2e-40 172.2 333 38.7
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 1.6e-40 171.8 177 52.0
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 1.6e-40 171.8 177 52.0
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 1.6e-40 171.8 155 56.1
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 1.6e-40 171.8 197 49.7
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 2.1e-40 171.4 337 37.1
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 2.1e-40 171.4 301 39.5
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 3.5e-40 170.6 166 55.4
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 4.6e-40 170.2 331 39.6
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 6.0e-40 169.9 312 41.0
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 1.0e-39 169.1 356 40.2
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.0e-39 169.1 450 37.1
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 3.0e-39 167.5 339 37.8
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 6.6e-39 166.4 285 40.4
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 1.5e-38 165.2 350 36.9
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 2.5e-38 164.5 127 65.4
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 3.3e-38 164.1 352 37.2
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 3.3e-38 164.1 171 51.5
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 9.6e-38 162.5 340 37.4
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 2.8e-37 161.0 154 55.8
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 2.8e-37 161.0 179 51.4
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 4.7e-37 160.2 350 37.7
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 6.2e-37 159.8 313 38.7
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 8.1e-37 159.5 238 41.2
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 3.1e-36 157.5 198 46.5
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 3.1e-36 157.5 165 53.9
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 4.0e-36 157.1 359 37.3
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 4.0e-36 157.1 152 53.3
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 1.5e-35 155.2 175 49.1
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 5.8e-35 153.3 154 50.6
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 7.6e-35 152.9 338 35.5
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 7.6e-35 152.9 179 48.0
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 2.9e-34 151.0 207 43.0
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 8.4e-34 149.4 346 35.5
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 1.1e-33 149.1 308 38.0
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 3.2e-33 147.5 189 45.5
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 9.3e-33 146.0 174 44.8
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.6e-32 145.2 106 65.1
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 2.7e-32 144.4 294 40.8
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 3.5e-32 144.1 195 45.6
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 4.6e-32 143.7 168 50.0
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 4.6e-32 143.7 235 38.7
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 4.6e-32 143.7 165 50.3
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 1.1e-30 139.0 188 43.6
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 1.9e-30 138.3 149 50.3
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 3.3e-30 137.5 266 40.6
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 2.8e-29 134.4 163 47.9
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 2.4e-28 131.3 340 35.3
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 2.6e-27 127.9 202 40.1
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 5.8e-27 126.7 185 43.2
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 1.9e-25 121.7 170 42.4
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 4.2e-25 120.6 126 46.0
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 7.9e-24 116.3 165 42.4
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 3.0e-23 114.4 148 41.9
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 4.3e-22 110.5 127 45.7
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 2.6e-19 101.3 87 56.3
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 3.4e-19 100.9 87 56.3
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 1.6e-16 92.0 196 36.7
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 3.4e-11 74.3 90 47.8
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 8.4e-10 69.7 65 47.7
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 1.1e-09 69.3 45 66.7
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 3.5e-08 64.3 115 35.7
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 2.5e-06 58.2 41 75.6


User provided reference genes

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