Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3953 Ceratophyllum demersum HOM05D004177 ORTHO05D004826 1.6e-65 252.7 131 100.0
CDE04G2922 Ceratophyllum demersum HOM05D004177 ORTHO05D004826 6.2e-30 134.4 71 91.5
arahy.Tifrunner.gnm1.ann1.H1EJ8W Arachis hypogaea HOM05D004177 ORTHO05D004826 2.5e-23 112.5 71 70.4
arahy.Tifrunner.gnm1.ann1.TIR1N2 Arachis hypogaea HOM05D004177 ORTHO05D004826 2.5e-23 112.5 71 70.4
QL02p063435 Quercus lobata HOM05D004177 ORTHO05D004826 4.8e-22 108.2 72 70.8
Aqoxy2G03855 Aquilegia oxysepala HOM05D004177 ORTHO05D004826 6.2e-22 107.8 71 69.0
Glyma.07G127600 Glycine max HOM05D004177 ORTHO05D004826 3.1e-21 105.5 72 69.4
Phvul.004G172700 Phaseolus vulgaris HOM05D004177 ORTHO05D004826 3.1e-21 105.5 66 69.7
MBI04_g06223_MAGBIO Magnolia biondii HOM05D004177 ORTHO05D004826 5.3e-21 104.8 73 69.9
CSS0022162 Camellia sinensis var. sinensis HOM05D004177 ORTHO05D004826 6.9e-21 104.4 71 69.0
CiPaw.03G219400 Carya illinoinensis HOM05D004177 ORTHO05D004826 6.9e-21 104.4 71 69.0
Haze_25874 Corylus avellana HOM05D004177 ORTHO05D004826 6.9e-21 104.4 71 67.6
Sabra03G0136900 Salix brachista HOM05D004177 ORTHO05D004826 6.9e-21 104.4 66 69.7
VMungo0464G2175 Vigna mungo HOM05D004177 ORTHO05D004826 9.0e-21 104.0 66 69.7
Ca_14076_v3 Cicer arietinum L. HOM05D004177 ORTHO05D004826 1.2e-20 103.6 71 66.2
Sopen02g025490 Solanum pennellii HOM05D004177 ORTHO05D004826 1.5e-20 103.2 104 54.8
Eucgr.C00926 Eucalyptus grandis HOM05D004177 ORTHO05D004826 2.0e-20 102.8 71 71.8
PGR142G0935 Punica granatum HOM05D004177 ORTHO05D004826 2.0e-20 102.8 71 67.6
TWI09G1015 Tripterygium wilfordii HOM05D004177 ORTHO05D004826 2.0e-20 102.8 65 70.8
Aa31LG11G6950 Aethionema arabicum HOM05D004177 ORTHO05D004826 2.6e-20 102.4 65 67.7
Cfa003130 Carpinus fangiana HOM05D004177 ORTHO05D004826 2.6e-20 102.4 71 66.2
TPR.G9556 Trifolium pratense HOM05D004177 ORTHO05D004826 2.6e-20 102.4 71 63.4
Manes.15G104600 Manihot esculenta HOM05D004177 ORTHO05D004826 4.5e-20 101.7 65 72.3
Psat7g081120 Pisum sativum HOM05D004177 ORTHO05D004826 4.5e-20 101.7 69 71.0
BcaC06g32302 Brassica carinata HOM05D004177 ORTHO05D004826 5.8e-20 101.3 66 65.2
A10p30370 Brassica napus HOM05D004177 ORTHO05D004826 5.8e-20 101.3 66 65.2
C09p70810 Brassica napus HOM05D004177 ORTHO05D004826 5.8e-20 101.3 66 65.2
BolC9t59847H Brassica oleracea HOM05D004177 ORTHO05D004826 5.8e-20 101.3 66 65.2
BraA10t45083Z Brassica rapa HOM05D004177 ORTHO05D004826 5.8e-20 101.3 66 65.2
Lsat_1_v5_gn_8_88081 Lactuca sativa HOM05D004177 ORTHO05D004826 5.8e-20 101.3 71 64.8
Actinidia29891 Actinidia chinensis HOM05D004177 ORTHO05D004826 7.6e-20 100.9 71 69.0
Ca_18171_v3 Cicer arietinum L. HOM05D004177 ORTHO05D004826 7.6e-20 100.9 71 64.8
Dinv36734 Davidia involucrata HOM05D004177 ORTHO05D004826 7.6e-20 100.9 98 56.1
Sp6g36980 Schrenkiella parvula HOM05D004177 ORTHO05D004826 1.0e-19 100.5 66 65.2
Atru.chr7.1532 Acer truncatum HOM05D004177 ORTHO05D004826 1.3e-19 100.1 65 69.2
AL6G15840 Arabidopsis lyrata HOM05D004177 ORTHO05D004826 1.7e-19 99.8 65 64.6
BcaB05g21688 Brassica carinata HOM05D004177 ORTHO05D004826 1.7e-19 99.8 66 65.2
Duzib114G0142 Durio zibethinus HOM05D004177 ORTHO05D004826 1.7e-19 99.8 65 66.2
Carub.0006s0480 Capsella rubella HOM05D004177 ORTHO05D004826 2.2e-19 99.4 99 51.5
Thhalv10013870m.g Eutrema salsugineum HOM05D004177 ORTHO05D004826 2.2e-19 99.4 99 50.5
Solyc02g080800.4 Solanum lycopersicum HOM05D004177 ORTHO05D004826 2.2e-19 99.4 104 53.8
Thecc.10G003500 Theobroma cacao HOM05D004177 ORTHO05D004826 2.2e-19 99.4 65 66.2
C02p02540 Brassica napus HOM05D001260 ORTHO05D002424 2.9e-19 99.0 66 65.2
CiPaw.12G022300 Carya illinoinensis HOM05D004177 ORTHO05D004826 2.9e-19 99.0 71 69.0
Lj1g0019759 Lotus japonicus HOM05D004177 ORTHO05D004826 2.9e-19 99.0 73 67.1
THA.LOC104826863 Tarenaya hassleriana HOM05D004177 ORTHO05D004826 2.9e-19 99.0 65 66.2
BolC2t06219H Brassica oleracea HOM05D004177 ORTHO05D004826 3.8e-19 98.6 66 66.7
Ciclev10008698m.g Citrus clementina HOM05D004177 ORTHO05D004826 3.8e-19 98.6 65 69.2
AT5G05920 Arabidopsis thaliana HOM05D004177 ORTHO05D004826 4.9e-19 98.2 100 48.0
Potri.003G186900 Populus trichocarpa HOM05D004177 ORTHO05D004826 4.9e-19 98.2 65 67.7
Hund18419 Selenicereus undatus HOM05D004177 ORTHO05D004826 6.5e-19 97.8 65 66.2
TPR.G38463 Trifolium pratense HOM05D004177 ORTHO05D004826 6.5e-19 97.8 71 63.4
EL10Ac6g14643 Beta vulgaris HOM05D004177 ORTHO05D004826 8.4e-19 97.4 98 52.0
Lsat_1_v5_gn_8_88021 Lactuca sativa HOM05D004177 ORTHO05D004826 8.4e-19 97.4 71 60.6
Actinidia25277 Actinidia chinensis HOM05D004177 ORTHO05D004826 1.1e-18 97.1 65 67.7
AUR62003036 Chenopodium quinoa HOM05D004177 ORTHO05D004826 1.4e-18 96.7 65 63.1
Cpa.g.sc19.251 Carica papaya HOM05D004177 ORTHO05D004826 1.9e-18 96.3 61 67.2
AUR62007842 Chenopodium quinoa HOM05D004177 ORTHO05D004826 1.9e-18 96.3 65 63.1
Gohir.D10G201600 Gossypium hirsutum HOM05D004177 ORTHO05D004826 1.9e-18 96.3 65 64.6
Gorai.011G226300 Gossypium raimondii HOM05D004177 ORTHO05D004826 1.9e-18 96.3 65 64.6
Hma1.2p1_0663F.1_g198701 Hydrangea macrophylla HOM05D004177 ORTHO05D004826 1.9e-18 96.3 98 52.0
Hma1.2p1_1074F.1_g254310 Hydrangea macrophylla HOM05D004177 ORTHO05D004826 1.9e-18 96.3 65 67.7
Sed0022999 Sechium edule HOM05D004177 ORTHO05D004826 1.9e-18 96.3 66 63.6
RcHm_v2.0_Chr2g0092611 Rosa chinensis HOM05D004177 ORTHO05D004826 2.5e-18 95.9 61 68.9
ClCG01G007700 Citrullus lanatus HOM05D004177 ORTHO05D004826 3.2e-18 95.5 66 62.1
Lalb_Chr24g0393931 Lupinus albus HOM05D004177 ORTHO05D004826 3.2e-18 95.5 64 62.5
Sc14g0000820 Simmondsia chinensis HOM05D004177 ORTHO05D004826 3.2e-18 95.5 65 66.2
COL.COLO4_19342 Corchorus olitorius HOM05D004177 ORTHO05D004826 4.2e-18 95.1 65 66.2
ECA236G1557 Erigeron canadensis HOM05D004177 ORTHO05D004826 4.2e-18 95.1 72 62.5
FAN23G1990 Fragaria x ananassa HOM05D004177 ORTHO05D004826 4.2e-18 95.1 66 62.1
FAN26G0736 Fragaria x ananassa HOM05D004177 ORTHO05D004826 4.2e-18 95.1 66 62.1
FAN26G2529 Fragaria x ananassa HOM05D004177 ORTHO05D004826 4.2e-18 95.1 66 62.1
Gohir.A10G194500 Gossypium hirsutum HOM05D004177 ORTHO05D004826 4.2e-18 95.1 65 66.2
THA.LOC104816571 Tarenaya hassleriana HOM05D004177 ORTHO05D004826 4.2e-18 95.1 61 67.2
Nn6g35409 Nelumbo nucifera HOM05D004177 ORTHO05D004826 5.5e-18 94.7 65 66.2
AUR62031232 Chenopodium quinoa HOM05D004177 ORTHO05D004826 7.1e-18 94.4 65 66.2
MELO3C025268.2 Cucumis melo HOM05D004177 ORTHO05D004826 7.1e-18 94.4 65 63.1
FvH4_1g06830 Fragaria vesca HOM05D004177 ORTHO05D004826 7.1e-18 94.4 66 62.1
FAN19G3030 Fragaria x ananassa HOM05D004177 ORTHO05D004826 7.1e-18 94.4 66 62.1
TAR636G0014 Trochodendron aralioides HOM05D004177 ORTHO05D004826 7.1e-18 94.4 71 63.4
AUR62027470 Chenopodium quinoa HOM05D004177 ORTHO05D004826 9.3e-18 94.0 65 66.2
AUR62030112 Chenopodium quinoa HOM05D004177 ORTHO05D004826 9.3e-18 94.0 61 70.5
MELO3C005126.2 Cucumis melo HOM05D004177 ORTHO05D004826 9.3e-18 94.0 65 63.1
MD15G1202800 Malus domestica HOM05D004177 ORTHO05D004826 1.2e-17 93.6 65 63.1
Sopen02g025480 Solanum pennellii HOM05D004177 ORTHO05D004826 1.2e-17 93.6 96 54.2
BraA02t04865Z Brassica rapa HOM05D004177 ORTHO05D004826 1.6e-17 93.2 123 43.1
Gohir.D10G201700 Gossypium hirsutum HOM05D004177 ORTHO05D004826 1.6e-17 93.2 65 64.6
Gorai.011G226400 Gossypium raimondii HOM05D004177 ORTHO05D004826 1.6e-17 93.2 65 64.6
Nn4g24829 Nelumbo nucifera HOM05D004177 ORTHO05D004826 1.6e-17 93.2 65 64.6
Rhsim03G0234600 Rhododendron simsii HOM05D004177 ORTHO05D004826 1.6e-17 93.2 72 68.1
HanXRQChr04g0112631 Helianthus annuus HOM05D004177 ORTHO05D004826 2.7e-17 92.4 71 64.8
vmacro00113 Vaccinium macrocarpon HOM05D004177 ORTHO05D004826 2.7e-17 92.4 72 62.5
FAN28G1160 Fragaria x ananassa HOM05D004177 ORTHO05D004826 3.5e-17 92.0 66 60.6
HanXRQChr09g0263461 Helianthus annuus HOM05D004177 ORTHO05D004826 3.5e-17 92.0 66 62.1
Prupe.7G214500 Prunus persica HOM05D004177 ORTHO05D004826 3.5e-17 92.0 65 61.5
vmacro06273 Vaccinium macrocarpon HOM05D004177 ORTHO05D004826 3.5e-17 92.0 72 63.9
Nitab4.5_0002695g0050 Nicotiana tabacum HOM05D004177 ORTHO05D004826 4.6e-17 91.7 71 63.4
Nitab4.5_0007963g0020 Nicotiana tabacum HOM05D004177 ORTHO05D004826 4.6e-17 91.7 104 51.0
Solyc02g080790.4 Solanum lycopersicum HOM05D004177 ORTHO05D004826 4.6e-17 91.7 96 53.1
Ah.09g228420 Amaranthus hybridus HOM05D004177 ORTHO05D004826 6.0e-17 91.3 65 61.5
Migut.J00439 Erythranthe guttata HOM05D004177 ORTHO05D004826 6.0e-17 91.3 71 63.4
GSVIVG01008468001 Vitis vinifera HOM05D004177 ORTHO05D004826 7.9e-17 90.9 65 64.6
Peaxi162Scf00178g01719 Petunia axillaris HOM05D004177 ORTHO05D004826 1.0e-16 90.5 104 51.0
CANSAT11G0575 Cannabis sativa HOM05D004177 ORTHO05D004826 1.8e-16 89.7 66 57.6
Gohir.A10G194600 Gossypium hirsutum HOM05D004177 ORTHO05D004826 1.8e-16 89.7 65 63.1
SHI02807 Sapria himalayana HOM05D004177 ORTHO05D004826 1.8e-16 89.7 59 67.8
Sed0017389 Sechium edule HOM05D004177 ORTHO05D004826 1.8e-16 89.7 66 60.6
MSTRG.19533 Avicennia marina HOM05D004177 ORTHO05D004826 3.0e-16 89.0 80 58.8
Cc06_g10990 Coffea canephora HOM05D004177 ORTHO05D004826 5.1e-16 88.2 71 59.2
CsaV3_5G024780 Cucumis sativus L. HOM05D004177 ORTHO05D004826 5.1e-16 88.2 65 58.5
DCAR_012005 Daucus carota HOM05D004177 ORTHO05D004826 5.1e-16 88.2 59 64.4
CAN.G1014.11 Capsicum annuum HOM05D004177 ORTHO05D004826 1.1e-15 87.0 92 52.2
MD02G1073000 Malus domestica HOM05D004177 ORTHO05D004826 1.1e-15 87.0 61 67.2
SalBow6G4427 Salvia bowleyana HOM05D004177 ORTHO05D004826 1.1e-15 87.0 71 59.2
ATR0789G091 Amborella trichopoda HOM05D004177 ORTHO05D004826 1.5e-15 86.7 71 53.5
PSO596G0001 Papaver somniferum HOM05D004177 ORTHO05D004826 1.5e-15 86.7 62 62.9
SGA_v2.0_scaffold62G21577 Striga asiatica HOM05D004177 ORTHO05D004826 1.5e-15 86.7 71 62.0
PSO210G7296 Papaver somniferum HOM05D004177 ORTHO05D004826 2.5e-15 85.9 70 57.1
unitig_27.g24734 Utricularia gibba HOM05D001806 ORTHO05D004826 3.3e-15 85.5 68 54.4
PSO210G0074 Papaver somniferum HOM05D004177 ORTHO05D004826 7.4e-15 84.3 70 55.7
ECA233G2252 Erigeron canadensis HOM05D004177 ORTHO05D004826 9.6e-15 84.0 75 56.0
HanXRQChr13g0409471 Helianthus annuus HOM05D004177 ORTHO05D004826 1.6e-14 83.2 62 62.9
SGA_v2.0_scaffold439G51649 Striga asiatica HOM05D004177 ORTHO05D004826 3.7e-14 82.0 104 48.1
HPP92_011031 Vanilla planifolia HOM05D004177 ORTHO05D004826 2.0e-12 76.3 60 61.7
HPP92_016663 Vanilla planifolia HOM05D004177 ORTHO05D004826 5.9e-12 74.7 129 36.4
Oeu052128.1 Olea europaea HOM05D004177 ORTHO05D004826 1.7e-11 73.2 47 68.1
Mapoly0001s0219 Marchantia polymorpha HOM05D004177 ORTHO05D004826 1.1e-10 70.5 60 56.7
SEGI_08410 Sequoiadendron giganteum HOM05D004177 ORTHO05D004826 1.1e-10 70.5 64 50.0
SMO337G0022 Selaginella moellendorffii HOM05D004177 ORTHO05D004826 2.1e-09 66.2 95 42.1
Os09g0421100 Oryza sativa ssp. japonica HOM05D004177 ORTHO05D004826 1.3e-08 63.5 68 51.5
Os03g0740600 Oryza sativa ssp. japonica HOM05D004177 ORTHO05D004826 3.0e-08 62.4 72 48.6
HPP92_014582 Vanilla planifolia HOM05D004177 ORTHO05D004826 3.0e-08 62.4 71 50.7
HPP92_001732 Vanilla planifolia HOM05D004177 ORTHO05D004826 1.5e-07 60.1 71 46.5
Zm00001eb215220 Zea mays HOM05D004177 ORTHO05D004826 1.6e-06 56.6 65 49.2
Pp3c2_9490 Physcomitrium patens HOM05D004177 ORTHO05D004826 2.8e-06 55.8 65 43.1
PRCOL_00001978 Prasinoderma coloniale HOM05D004177 ORTHO05D004826 8.2e-06 54.3 59 44.1


User provided reference genes

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