Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 3.6e-307 1057.4 521 100.0
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 4.8e-275 950.7 486 96.7
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 1.1e-226 790.0 492 76.8
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 3.0e-224 781.9 492 76.4
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 3.0e-224 781.9 489 78.9
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 5.0e-224 781.2 488 78.9
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 1.2e-222 776.5 490 78.0
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 1.6e-222 776.2 486 76.7
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 4.7e-222 774.6 488 77.5
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 8.0e-222 773.9 489 76.9
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 1.1e-221 773.5 487 77.4
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.1e-221 773.5 486 77.0
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 1.8e-221 772.7 489 77.1
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.3e-221 772.3 486 76.3
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 3.1e-221 771.9 489 76.7
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 4.0e-221 771.5 486 77.4
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 6.8e-221 770.8 490 75.7
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 1.2e-220 770.0 488 76.8
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 1.2e-220 770.0 484 77.9
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 2.0e-220 769.2 485 77.1
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 2.6e-220 768.8 488 78.1
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 2.6e-220 768.8 488 78.1
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 3.4e-220 768.5 485 77.5
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 3.4e-220 768.5 490 76.1
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 4.4e-220 768.1 485 77.3
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 5.8e-220 767.7 489 77.1
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 5.8e-220 767.7 489 76.1
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 7.5e-220 767.3 490 77.1
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 9.8e-220 766.9 484 77.3
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.7e-219 766.1 486 76.1
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 1.7e-219 766.1 488 77.3
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 1.7e-219 766.1 485 76.7
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 2.2e-219 765.8 489 75.9
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 2.9e-219 765.4 493 75.3
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 3.7e-219 765.0 486 75.7
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 8.3e-219 763.8 491 75.6
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 8.3e-219 763.8 488 76.8
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 1.1e-218 763.5 490 76.1
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.1e-218 763.5 488 76.8
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 1.1e-218 763.5 490 74.7
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 1.4e-218 763.1 488 77.0
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.9e-218 762.7 486 76.7
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.9e-218 762.7 486 76.7
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 1.9e-218 762.7 488 77.0
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 2.4e-218 762.3 486 76.3
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 2.4e-218 762.3 487 76.2
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.2e-218 761.9 486 75.9
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 4.1e-218 761.5 488 77.0
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 4.1e-218 761.5 489 74.8
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 7.0e-218 760.8 489 75.9
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 9.2e-218 760.4 488 75.8
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 9.2e-218 760.4 491 75.4
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 9.2e-218 760.4 486 76.5
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 9.2e-218 760.4 499 76.4
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.2e-217 760.0 490 75.1
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 1.6e-217 759.6 488 76.6
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 3.5e-217 758.4 486 75.7
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 3.5e-217 758.4 490 74.7
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 3.5e-217 758.4 488 75.8
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 6.0e-217 757.7 488 76.6
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.0e-216 756.9 487 75.4
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 1.3e-216 756.5 488 75.4
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 6.6e-216 754.2 490 74.3
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 6.6e-216 754.2 487 75.2
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 6.6e-216 754.2 488 75.6
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 4.3e-215 751.5 493 75.3
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 5.6e-215 751.1 487 76.2
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 5.6e-215 751.1 491 74.7
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 7.3e-215 750.7 488 75.6
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 9.5e-215 750.4 488 75.0
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 1.2e-214 750.0 491 75.2
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 2.1e-214 749.2 494 74.1
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 2.1e-214 749.2 490 74.5
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.1e-214 749.2 505 74.3
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 2.8e-214 748.8 487 74.9
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 4.7e-214 748.0 486 75.3
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 8.1e-214 747.3 485 75.1
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 1.4e-213 746.5 486 75.5
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 1.4e-213 746.5 490 75.1
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 2.3e-213 745.7 485 75.1
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 2.3e-213 745.7 523 71.5
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 4.0e-213 745.0 492 74.0
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 5.2e-213 744.6 492 74.4
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 5.2e-213 744.6 526 71.7
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 6.8e-213 744.2 487 74.9
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 8.9e-213 743.8 483 75.2
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 8.9e-213 743.8 492 73.8
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 1.2e-212 743.4 490 74.7
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 2.6e-212 742.3 484 75.0
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 3.4e-212 741.9 488 74.8
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 3.4e-212 741.9 481 75.1
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 4.4e-212 741.5 475 75.4
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 5.8e-212 741.1 491 74.5
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.3e-211 740.0 485 74.4
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 2.2e-211 739.2 494 74.3
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 2.2e-211 739.2 484 74.6
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 8.3e-211 737.3 484 74.8
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 1.1e-210 736.9 492 74.4
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 1.4e-210 736.5 484 74.8
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 2.4e-210 735.7 484 74.8
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 2.4e-210 735.7 491 74.7
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 1.6e-209 733.0 473 75.5
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 4.7e-206 721.5 512 70.9
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 1.4e-205 719.9 491 72.1
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 3.5e-201 705.3 446 76.2
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 1.2e-198 696.8 438 77.4
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 5.3e-197 691.4 438 77.2
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 2.9e-195 685.6 434 77.9
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 3.8e-195 685.3 486 68.7
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 2.1e-193 679.5 479 68.9
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 3.5e-193 678.7 439 75.2
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 3.9e-192 675.2 441 75.1
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 7.3e-191 671.0 433 76.2
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 5.8e-188 661.4 480 66.7
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 2.1e-185 652.9 383 82.5
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.6e-182 643.3 494 68.4
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.3e-176 623.6 482 68.3
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 3.7e-174 615.5 398 74.1
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 5.3e-165 585.1 507 59.8
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 1.5e-164 583.6 487 62.6
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 6.5e-163 578.2 379 75.5
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 1.0e-160 570.9 491 61.1
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.4e-160 570.5 380 73.9
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 1.4e-152 543.9 387 70.5
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 4.2e-146 522.3 346 74.3
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.0e-144 517.7 459 62.3
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 9.1e-141 504.6 535 49.5
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 2.2e-139 500.0 390 65.6
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.0e-124 450.3 265 81.9
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 3.5e-116 422.9 455 49.5
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 1.6e-108 397.5 241 78.4
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 1.1e-106 391.3 255 74.5
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 1.3e-102 377.9 430 49.3
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 9.2e-101 371.7 245 71.0
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.2e-100 371.3 479 47.4
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 5.1e-99 365.9 228 78.5
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 1.9e-98 364.0 301 62.8
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 1.4e-93 347.8 255 68.2
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 6.2e-89 332.4 234 71.8
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 1.1e-88 331.6 303 60.7
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 5.1e-83 312.8 307 55.0
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 4.6e-76 289.7 239 61.9
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 9.9e-71 271.9 253 58.1
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 3.2e-53 213.8 160 63.8
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 7.2e-53 212.6 260 48.1
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 4.6e-44 183.3 101 85.1
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 1.8e-43 181.4 146 61.6
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 1.5e-42 178.3 99 81.8
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 4.8e-41 173.3 297 40.4
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 8.2e-41 172.6 96 81.2
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.4e-40 171.8 151 61.6
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 7.2e-37 159.5 143 58.0
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 5.1e-35 153.3 100 68.0
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 6.1e-28 129.8 75 80.0
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 3.0e-27 127.5 123 54.5
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 2.2e-25 121.3 155 47.7
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 1.8e-24 118.2 79 69.6
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 4.1e-24 117.1 85 65.9
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 9.8e-18 95.9 93 55.9
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 4.5e-15 87.0 71 63.4
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 2.2e-14 84.7 61 73.8
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 8.8e-11 72.8 36 91.7
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 9.8e-10 69.3 46 71.7
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 3.7e-09 67.4 51 66.7
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 4.5e-07 60.5 30 83.3


User provided reference genes

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