Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3507 Ceratophyllum demersum HOM05D007200 ORTHO05D009030 7.4e-164 580.5 296 100.0
Lj9C124T9 Lonicera japonica HOM05D007200 ORTHO05D009030 1.2e-84 317.4 282 57.4
Manes.08G119500 Manihot esculenta HOM05D007200 ORTHO05D009030 4.5e-84 315.5 268 59.0
QL03p012758 Quercus lobata HOM05D007200 ORTHO05D009030 5.8e-84 315.1 283 57.2
BcaC05g30148 Brassica carinata HOM05D007200 ORTHO05D009030 1.3e-83 313.9 271 56.8
Haze_04164 Corylus avellana HOM05D007200 ORTHO05D009030 1.3e-83 313.9 277 57.0
Eucgr.B01933 Eucalyptus grandis HOM05D007200 ORTHO05D009030 1.3e-83 313.9 264 59.5
Lj9C128T5 Lonicera japonica HOM05D007200 ORTHO05D009030 2.2e-83 313.2 267 59.9
GSVIVG01031113001 Vitis vinifera HOM05D007200 ORTHO05D009030 2.2e-83 313.2 278 59.7
BcaC05g30124 Brassica carinata HOM05D007200 ORTHO05D009030 3.8e-83 312.4 291 54.3
Cfa006611 Carpinus fangiana HOM05D007200 ORTHO05D009030 3.8e-83 312.4 276 56.5
BraA05t23030Z Brassica rapa HOM05D007200 ORTHO05D009030 4.9e-83 312.0 255 58.4
Glyma.10G153100 Glycine max HOM05D007200 ORTHO05D009030 8.4e-83 311.2 276 57.2
BolC5t34842H Brassica oleracea HOM05D007200 ORTHO05D000438 1.9e-82 310.1 293 54.3
Aqoxy5G00700 Aquilegia oxysepala HOM05D007200 ORTHO05D009030 3.2e-82 309.3 284 55.3
CANSAT54G2021 Cannabis sativa HOM05D007200 ORTHO05D009030 3.2e-82 309.3 266 59.0
ECA236G3394 Erigeron canadensis HOM05D007200 ORTHO05D009030 1.2e-81 307.4 247 63.6
Sed0020284 Sechium edule HOM05D007200 ORTHO05D009030 1.2e-81 307.4 289 56.7
Sp3g04270 Schrenkiella parvula HOM05D007200 ORTHO05D009030 2.1e-81 306.6 276 55.4
Lsat_1_v5_gn_9_87521 Lactuca sativa HOM05D007200 ORTHO05D009030 2.7e-81 306.2 293 56.3
TAR365G0308 Trochodendron aralioides HOM05D007200 ORTHO05D009030 3.5e-81 305.8 300 53.7
AL3G15960 Arabidopsis lyrata HOM05D007200 ORTHO05D009030 1.0e-80 304.3 271 56.1
Thhalv10021289m.g Eutrema salsugineum HOM05D007200 ORTHO05D009030 1.0e-80 304.3 272 55.5
Phvul.007G196200 Phaseolus vulgaris HOM05D007200 ORTHO05D009030 1.0e-80 304.3 254 59.8
RcHm_v2.0_Chr3g0455321 Rosa chinensis HOM05D007200 ORTHO05D009030 1.0e-80 304.3 284 56.7
TAR365G0906 Trochodendron aralioides HOM05D007200 ORTHO05D009030 1.0e-80 304.3 300 53.3
FvH4_6g06280 Fragaria vesca HOM05D007200 ORTHO05D009030 1.3e-80 303.9 270 57.4
VMungo0720G1786 Vigna mungo HOM05D007200 ORTHO05D009030 1.8e-80 303.5 260 58.8
FAN14G1797 Fragaria x ananassa HOM05D007200 ORTHO05D009030 5.1e-80 302.0 270 57.0
MBI19_g12813_MAGBIO Magnolia biondii HOM05D007200 ORTHO05D009030 5.1e-80 302.0 274 58.0
CsaV3_2G006520 Cucumis sativus L. HOM05D007200 ORTHO05D009030 6.7e-80 301.6 285 55.4
Nn3g21404 Nelumbo nucifera HOM05D007200 ORTHO05D009030 6.7e-80 301.6 302 53.0
FAN09G0829 Fragaria x ananassa HOM05D007200 ORTHO05D009030 1.5e-79 300.4 283 55.5
CARHR079750 Cardamine hirsuta HOM05D007200 ORTHO05D009030 1.9e-79 300.1 252 56.7
Ciclev10002020m.g Citrus clementina HOM05D007200 ORTHO05D009030 1.9e-79 300.1 282 54.6
Thecc.05G310900 Theobroma cacao HOM05D007200 ORTHO05D009030 2.5e-79 299.7 284 56.0
Sabra05G0032400 Salix brachista HOM05D007200 ORTHO05D009030 4.3e-79 298.9 293 53.6
AUR62000793 Chenopodium quinoa HOM05D007200 ORTHO05D009030 5.6e-79 298.5 278 56.5
AUR62005175 Chenopodium quinoa HOM05D007200 ORTHO05D009030 7.4e-79 298.1 277 56.0
Duzib177G0869 Durio zibethinus HOM05D007200 ORTHO05D009030 7.4e-79 298.1 279 56.3
Gohir.A11G266300 Gossypium hirsutum HOM05D007200 ORTHO05D009030 7.4e-79 298.1 269 58.0
AT3G05410 Arabidopsis thaliana HOM05D007200 ORTHO05D009030 1.6e-78 297.0 274 54.7
MELO3C004233.2 Cucumis melo HOM05D007200 ORTHO05D009030 1.6e-78 297.0 287 55.1
Atru.chr12.1493 Acer truncatum HOM05D007200 ORTHO05D009030 2.1e-78 296.6 276 56.2
Gorai.007G298700 Gossypium raimondii HOM05D007200 ORTHO05D009030 2.8e-78 296.2 269 58.0
Lalb_Chr21g0310651 Lupinus albus HOM05D007200 ORTHO05D009030 2.8e-78 296.2 277 56.0
DCAR_001939 Daucus carota HOM05D007200 ORTHO05D009030 6.2e-78 295.0 262 58.0
PGR083G0889 Punica granatum HOM05D007200 ORTHO05D009030 8.1e-78 294.7 299 51.8
Sopen11g004260 Solanum pennellii HOM05D007200 ORTHO05D009030 8.1e-78 294.7 253 60.5
Carub.0003s0469 Capsella rubella HOM05D007200 ORTHO05D009030 1.4e-77 293.9 272 55.5
Gohir.D11G276600 Gossypium hirsutum HOM05D007200 ORTHO05D009030 1.4e-77 293.9 269 57.2
CAN.G321.37 Capsicum annuum HOM05D007200 ORTHO05D009030 1.8e-77 293.5 302 52.3
PGSC0003DMG400007427 Solanum tuberosum HOM05D007200 ORTHO05D009030 1.8e-77 293.5 309 52.1
Solyc11g008480.2 Solanum lycopersicum HOM05D007200 ORTHO05D009030 2.4e-77 293.1 253 60.1
Cpa.g.sc48.76 Carica papaya HOM05D007200 ORTHO05D009030 4.0e-77 292.4 287 54.7
CiPaw.07G020000 Carya illinoinensis HOM05D007200 ORTHO05D009030 9.0e-77 291.2 277 54.2
Actinidia24645 Actinidia chinensis HOM05D007200 ORTHO05D009030 1.5e-76 290.4 296 54.7
Aa31LG5G15970 Aethionema arabicum HOM05D007200 ORTHO05D009030 1.5e-76 290.4 290 51.7
COL.COLO4_10491 Corchorus olitorius HOM05D007200 ORTHO05D009030 1.5e-76 290.4 261 57.5
TPR.G6036 Trifolium pratense HOM05D007200 ORTHO05D009030 1.5e-76 290.4 271 57.2
MD12G1216700 Malus domestica HOM05D007200 ORTHO05D009030 3.4e-76 289.3 266 55.3
Rhsim05G0141700 Rhododendron simsii HOM05D007200 ORTHO05D009030 4.5e-76 288.9 276 56.5
THA.LOC104818708 Tarenaya hassleriana HOM05D007200 ORTHO05D009030 7.6e-76 288.1 264 54.9
Migut.O00553 Erythranthe guttata HOM05D007200 ORTHO05D009030 9.9e-76 287.7 269 55.4
Lj5g0005198 Lotus japonicus HOM05D007200 ORTHO05D009030 9.9e-76 287.7 275 54.9
Peaxi162Scf00071g00636 Petunia axillaris HOM05D007200 ORTHO05D009030 9.9e-76 287.7 300 53.3
Psat6g149880 Pisum sativum HOM05D007200 ORTHO05D009030 9.9e-76 287.7 247 59.9
Medtr1g083110 Medicago truncatula HOM05D007200 ORTHO05D009030 1.3e-75 287.3 266 57.5
Migut.N01991 Erythranthe guttata HOM05D007200 ORTHO05D009030 4.9e-75 285.4 269 55.0
HanXRQChr11g0339441 Helianthus annuus HOM05D007200 ORTHO05D009030 4.9e-75 285.4 252 60.3
Nitab4.5_0002420g0030 Nicotiana tabacum HOM05D007200 ORTHO05D009030 6.4e-75 285.0 275 54.9
ATR0706G032 Amborella trichopoda HOM05D007200 ORTHO05D009030 8.4e-75 284.6 266 56.0
CSS0011307 Camellia sinensis var. sinensis HOM05D007200 ORTHO05D009030 8.4e-75 284.6 296 53.0
TWI12G0470 Tripterygium wilfordii HOM05D007200 ORTHO05D009030 1.4e-74 283.9 296 50.0
Prupe.6G323000 Prunus persica HOM05D007200 ORTHO05D009030 2.3e-72 276.6 260 55.4
Cc02_g31060 Coffea canephora HOM05D007200 ORTHO05D009030 3.9e-72 275.8 259 57.1
Zm00001eb142170 Zea mays HOM05D007200 ORTHO05D009030 5.1e-72 275.4 259 54.1
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 1.1e-71 274.2 253 54.9
EL10Ac4g09392 Beta vulgaris HOM05D007200 ORTHO05D009030 1.9e-71 273.5 296 51.4
PSO210G0998 Papaver somniferum HOM05D007200 ORTHO05D009030 3.3e-71 272.7 268 53.0
SGA_v2.0_scaffold98G29315 Striga asiatica HOM05D007200 ORTHO05D009030 3.3e-71 272.7 250 55.6
BcaC05g30126 Brassica carinata HOM05D007200 ORTHO05D009030 1.3e-70 270.8 291 50.9
ClCG02G015570 Citrullus lanatus HOM05D007200 ORTHO05D009030 2.1e-70 270.0 263 54.4
arahy.Tifrunner.gnm1.ann1.PH9A9F Arachis hypogaea HOM05D007200 ORTHO05D009030 8.1e-70 268.1 256 55.9
PSO832G2855 Papaver somniferum HOM05D007200 ORTHO05D009030 3.1e-69 266.2 268 53.0
arahy.Tifrunner.gnm1.ann1.H2XQXC Arachis hypogaea HOM05D007200 ORTHO05D009030 5.3e-69 265.4 256 55.5
FAN02G4393 Fragaria x ananassa HOM05D007200 ORTHO05D009030 4.5e-68 262.3 236 56.4
Ah.04g160430 Amaranthus hybridus HOM05D007200 ORTHO05D009030 5.8e-68 261.9 277 51.6
Nitab4.5_0009303g0010 Nicotiana tabacum HOM05D007200 ORTHO05D009030 6.5e-67 258.5 275 53.1
MSTRG.27987 Avicennia marina HOM05D007200 ORTHO05D009030 1.2e-65 254.2 258 52.7
vmacro19623 Vaccinium macrocarpon HOM05D007200 ORTHO05D009030 2.7e-65 253.1 259 53.3
FAN05G3823 Fragaria x ananassa HOM05D000179 ORTHO05D009030 3.5e-65 252.7 233 56.2
CANSAT54G2778 Cannabis sativa HOM05D007200 ORTHO05D009030 1.0e-64 251.1 214 59.8
HPP92_006928 Vanilla planifolia HOM05D000065 ORTHO05D001606 1.3e-64 250.8 260 50.0
Potri.005G027100 Populus trichocarpa HOM05D007200 ORTHO05D009030 5.0e-59 232.3 232 55.6
AagrBONN_evm.TU.Sc2ySwM_228.2760 Anthoceros agrestis HOM05D007200 ORTHO05D009030 1.1e-55 221.1 284 42.6
Pp3c2_22000 Physcomitrium patens HOM05D007200 ORTHO05D009030 9.1e-53 211.5 269 43.5
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 5.0e-51 205.7 276 40.2
SMO140G0101 Selaginella moellendorffii HOM05D007200 ORTHO05D009030 6.5e-51 205.3 249 45.4
Os01g0934400 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 7.2e-50 201.8 187 54.5
Hund07085 Selenicereus undatus HOM05D007200 ORTHO05D009030 6.9e-45 185.3 188 52.1
Sc16g0008540 Simmondsia chinensis HOM05D007200 ORTHO05D009030 1.2e-44 184.5 202 49.0
CBR_g32304 Chara braunii HOM05D007200 ORTHO05D009030 2.2e-43 180.3 277 36.1
SGA_v2.0_scaffold95G28806 Striga asiatica HOM05D007200 ORTHO05D009030 1.1e-39 167.9 141 58.9
AUR62004827 Chenopodium quinoa HOM05D007200 ORTHO05D009030 1.7e-35 154.1 163 52.1
MCO07G015 Micromonas commoda HOM05D007200 ORTHO05D009030 7.5e-31 138.7 258 33.3
PRCOL_00003141 Prasinoderma coloniale HOM05D007200 ORTHO05D009030 9.7e-31 138.3 254 35.0
Cre09.g389578 Chlamydomonas reinhardtii HOM05D007200 ORTHO05D009030 3.7e-30 136.3 266 33.8
Oeu012109.1 Olea europaea HOM05D007200 ORTHO05D009030 3.5e-28 129.8 107 57.0
Actinidia19786 Actinidia chinensis HOM05D007200 ORTHO05D009030 5.4e-21 105.9 114 50.9
C05p61820 Brassica napus HOM05D000205 ORTHO05D000438 1.0e-19 101.7 142 43.0
MD04G1202900 Malus domestica HOM05D007200 ORTHO05D009030 1.4e-16 91.3 129 43.4
Os01g0934350 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 4.4e-15 86.3 86 48.8
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 1.6e-09 67.8 265 23.8
Phvul.008G015100 Phaseolus vulgaris HOM05D002933 ORTHO05D007742 3.6e-09 66.6 279 23.3
AUR62032114 Chenopodium quinoa HOM05D002933 ORTHO05D007742 4.7e-09 66.2 271 24.4
VMungo1383G1673 Vigna mungo HOM05D002933 ORTHO05D007742 4.7e-09 66.2 195 23.6
Sopen03g034010 Solanum pennellii HOM05D002933 ORTHO05D007742 1.0e-08 65.1 237 24.5
Solyc03g114930.3 Solanum lycopersicum HOM05D002933 ORTHO05D007742 1.8e-08 64.3 237 24.5
Carub.0005s2198 Capsella rubella HOM05D002933 ORTHO05D007742 2.3e-08 63.9 195 24.6
AUR62039657 Chenopodium quinoa HOM05D002933 ORTHO05D007742 3.0e-08 63.5 255 23.1
PGSC0003DMG400024531 Solanum tuberosum HOM05D002933 ORTHO05D007742 3.0e-08 63.5 237 23.6
BcaC02g09745 Brassica carinata HOM05D002933 ORTHO05D007742 4.0e-08 63.2 195 23.6
BolC4t25275H Brassica oleracea HOM05D002933 ORTHO05D007742 4.0e-08 63.2 195 23.6
Glyma.18G286500 Glycine max HOM05D002933 ORTHO05D007742 4.0e-08 63.2 194 22.2
A04p04610 Brassica napus HOM05D002933 ORTHO05D007742 5.2e-08 62.8 195 23.6
BraA04t16171Z Brassica rapa HOM05D002933 ORTHO05D007742 5.2e-08 62.8 195 23.6
Ciclev10032564m.g Citrus clementina HOM05D002933 ORTHO05D007742 5.2e-08 62.8 238 23.9
Cre12.g509050 Chlamydomonas reinhardtii HOM05D002933 ORTHO05D007742 6.8e-08 62.4 195 24.6
Migut.B00505 Erythranthe guttata HOM05D002933 ORTHO05D007742 8.9e-08 62.0 238 23.9
Thhalv10010685m.g Eutrema salsugineum HOM05D002933 ORTHO05D007742 8.9e-08 62.0 195 23.6
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 8.9e-08 62.0 198 23.2
BcaB02g08429 Brassica carinata HOM05D002933 ORTHO05D007742 1.5e-07 61.2 195 23.1
PSO384G2709 Papaver somniferum HOM05D002933 ORTHO05D007742 2.6e-07 60.5 275 22.9
CAN.G1228.6 Capsicum annuum HOM05D002933 ORTHO05D007742 4.4e-07 59.7 194 24.2
PSO135G0212 Papaver somniferum HOM05D002933 ORTHO05D007742 5.7e-07 59.3 275 22.9
EL10Ac5g11164 Beta vulgaris HOM05D002933 ORTHO05D007742 3.7e-06 56.6 294 23.1


User provided reference genes

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