Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3487 Ceratophyllum demersum HOM05D000068 ORTHO05D008004 2.3e-171 605.5 315 100.0
CDE11G1240 Ceratophyllum demersum HOM05D000068 ORTHO05D008004 2.9e-134 482.3 339 79.4
Manes.06G142900 Manihot esculenta HOM05D000068 ORTHO05D008004 1.5e-74 283.9 194 72.2
Nn1g01334 Nelumbo nucifera HOM05D000068 ORTHO05D008004 2.6e-74 283.1 194 75.3
TWI23G1186 Tripterygium wilfordii HOM05D000068 ORTHO05D008004 4.9e-73 278.9 194 72.2
Gohir.A08G094300 Gossypium hirsutum HOM05D000068 ORTHO05D008004 8.4e-73 278.1 194 71.6
Gohir.D08G104800 Gossypium hirsutum HOM05D000068 ORTHO05D008004 8.4e-73 278.1 194 71.6
Gorai.004G111900 Gossypium raimondii HOM05D000068 ORTHO05D008004 8.4e-73 278.1 194 71.6
Dinv35171 Davidia involucrata HOM05D000068 ORTHO05D008004 1.9e-72 276.9 194 71.1
Duzib084G1174 Durio zibethinus HOM05D000068 ORTHO05D008004 1.9e-72 276.9 194 71.1
TAR375G1046 Trochodendron aralioides HOM05D000068 ORTHO05D008004 3.2e-72 276.2 194 73.2
FvH4_7g28920 Fragaria vesca HOM05D000068 ORTHO05D008004 2.7e-71 273.1 194 69.6
Ciclev10004389m.g Citrus clementina HOM05D000068 ORTHO05D008004 1.3e-70 270.8 194 68.0
Thecc.03G169600 Theobroma cacao HOM05D000068 ORTHO05D008004 1.3e-70 270.8 194 70.6
PGR042G3668 Punica granatum HOM05D000068 ORTHO05D008004 3.0e-70 269.6 194 69.1
Potri.015G136700 Populus trichocarpa HOM05D000068 ORTHO05D008004 3.9e-70 269.2 194 69.1
Prupe.2G289200 Prunus persica HOM05D000068 ORTHO05D008004 3.9e-70 269.2 194 68.6
CARHR232880 Cardamine hirsuta HOM05D000068 ORTHO05D008004 5.1e-70 268.9 194 68.6
PSO478G3760 Papaver somniferum HOM05D000068 ORTHO05D008004 5.1e-70 268.9 194 70.1
AL7G27640 Arabidopsis lyrata HOM05D000068 ORTHO05D008004 6.6e-70 268.5 194 68.6
Atru.chr1.535 Acer truncatum HOM05D000068 ORTHO05D008004 8.7e-70 268.1 194 69.1
BcaB03g12468 Brassica carinata HOM05D000068 ORTHO05D008004 1.1e-69 267.7 194 67.5
CSS0038988 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D008004 1.1e-69 267.7 194 68.0
Glyma.09G147400 Glycine max HOM05D000068 ORTHO05D008004 1.1e-69 267.7 194 68.6
Thhalv10024541m.g Eutrema salsugineum HOM05D000068 ORTHO05D008004 1.5e-69 267.3 194 68.0
AT4G25450 Arabidopsis thaliana HOM05D000068 ORTHO05D008004 1.9e-69 266.9 194 68.6
Eucgr.A02836 Eucalyptus grandis HOM05D000068 ORTHO05D008004 1.9e-69 266.9 211 64.0
Phvul.004G122300 Phaseolus vulgaris HOM05D000068 ORTHO05D008004 1.9e-69 266.9 194 68.6
Psat1g105160 Pisum sativum HOM05D000068 ORTHO05D008004 1.9e-69 266.9 194 67.0
CiPaw.04G068300 Carya illinoinensis HOM05D000068 ORTHO05D008004 2.5e-69 266.5 194 68.0
QL09p015467 Quercus lobata HOM05D000068 ORTHO05D008004 2.5e-69 266.5 206 66.0
Sp7g23500 Schrenkiella parvula HOM05D000068 ORTHO05D008004 2.5e-69 266.5 194 67.5
ATR0757G104 Amborella trichopoda HOM05D000068 ORTHO05D008004 3.3e-69 266.2 194 69.6
Aqoxy7G00466 Aquilegia oxysepala HOM05D000068 ORTHO05D008004 3.3e-69 266.2 194 67.0
VMungo0464G1471 Vigna mungo HOM05D000068 ORTHO05D008004 7.3e-69 265.0 194 68.0
BcaC07g38190 Brassica carinata HOM05D000068 ORTHO05D008004 9.6e-69 264.6 194 66.5
CSS0031874 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D008004 9.6e-69 264.6 194 67.5
CSS0037171 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D008004 1.3e-68 264.2 194 67.5
Carub.0007s1553 Capsella rubella HOM05D000068 ORTHO05D008004 1.3e-68 264.2 194 67.0
GSVIVG01010634001 Vitis vinifera HOM05D000068 ORTHO05D008004 2.1e-68 263.5 194 67.5
Actinidia34073 Actinidia chinensis HOM05D000068 ORTHO05D008004 3.6e-68 262.7 194 67.5
FAN06G0981 Fragaria x ananassa HOM05D000068 ORTHO05D008004 3.6e-68 262.7 206 65.0
MSTRG.27140 Avicennia marina HOM05D000068 ORTHO05D008004 6.2e-68 261.9 191 68.1
Ca_26265_v3 Cicer arietinum L. HOM05D000068 ORTHO05D008004 8.1e-68 261.5 194 65.5
Migut.F00384 Erythranthe guttata HOM05D000068 ORTHO05D008004 1.4e-67 260.8 191 67.5
Medtr6g465300 Medicago truncatula HOM05D000068 ORTHO05D008004 1.4e-67 260.8 194 65.5
Sc13g0008410 Simmondsia chinensis HOM05D000068 ORTHO05D008004 1.4e-67 260.8 194 66.5
THA.LOC104798735 Tarenaya hassleriana HOM05D000068 ORTHO05D008004 1.4e-67 260.8 194 67.5
TPR.G9189 Trifolium pratense HOM05D000068 ORTHO05D008004 1.8e-67 260.4 194 64.9
Aa31sc521G30 Aethionema arabicum HOM05D000068 ORTHO05D008004 2.4e-67 260.0 195 68.2
Os07g0464600 Oryza sativa ssp. japonica HOM05D000068 ORTHO05D008004 2.4e-67 260.0 194 67.0
Actinidia32904 Actinidia chinensis HOM05D000068 ORTHO05D008004 5.3e-67 258.8 194 67.0
CSS0023345 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D008004 5.3e-67 258.8 206 64.1
ECA232G0015 Erigeron canadensis HOM05D000068 ORTHO05D008004 6.9e-67 258.5 194 65.5
Lj2g0015007 Lotus japonicus HOM05D000068 ORTHO05D008004 9.0e-67 258.1 194 66.5
Hma1.2p1_0270F.1_g108530 Hydrangea macrophylla HOM05D000068 ORTHO05D008004 1.2e-66 257.7 194 67.5
SEGI_37609 Sequoiadendron giganteum HOM05D000068 ORTHO05D008004 1.5e-66 257.3 194 65.5
Haze_13771 Corylus avellana HOM05D000068 ORTHO05D008004 2.0e-66 256.9 213 62.4
Oeu047984.1 Olea europaea HOM05D000068 ORTHO05D008004 2.0e-66 256.9 194 66.5
A08p21170 Brassica napus HOM05D000068 ORTHO05D008004 5.8e-66 255.4 211 61.6
Sabra15G0148400 Salix brachista HOM05D000068 ORTHO05D008004 5.8e-66 255.4 222 60.4
CANSAT21G0450 Cannabis sativa HOM05D000068 ORTHO05D008004 9.9e-66 254.6 194 64.9
BolC8t48610H Brassica oleracea HOM05D000068 ORTHO05D008004 1.3e-65 254.2 211 61.1
Pp3c16_7170 Physcomitrium patens HOM05D000068 ORTHO05D008004 1.3e-65 254.2 194 63.4
Sed0022360 Sechium edule HOM05D000068 ORTHO05D008004 1.3e-65 254.2 194 63.4
BraA08t34066Z Brassica rapa HOM05D000068 ORTHO05D008004 1.7e-65 253.8 211 61.1
Cpa.g.sc107.1 Carica papaya HOM05D000068 ORTHO05D008004 2.2e-65 253.4 194 63.9
CsaV3_5G005630 Cucumis sativus L. HOM05D000068 ORTHO05D008004 2.2e-65 253.4 194 63.9
Lalb_Chr03g0034221 Lupinus albus HOM05D000068 ORTHO05D008004 2.2e-65 253.4 194 63.4
Sed0012146 Sechium edule HOM05D000068 ORTHO05D008004 2.2e-65 253.4 194 65.5
Zm00001eb306760 Zea mays HOM05D000068 ORTHO05D008004 2.2e-65 253.4 194 66.0
FAN01G0643 Fragaria x ananassa HOM05D000068 ORTHO05D008004 8.4e-65 251.5 214 62.1
HanXRQChr15g0486321 Helianthus annuus HOM05D000068 ORTHO05D008004 8.4e-65 251.5 194 63.4
Solyc03g026310.4 Solanum lycopersicum HOM05D000068 ORTHO05D008004 1.1e-64 251.1 194 63.4
FAN03G2985 Fragaria x ananassa HOM05D000068 ORTHO05D008004 1.4e-64 250.8 214 61.7
FAN06G1335 Fragaria x ananassa HOM05D000068 ORTHO05D008004 2.4e-64 250.0 228 58.8
Cc02_g03450 Coffea canephora HOM05D000068 ORTHO05D008004 3.2e-64 249.6 194 62.4
Sopen03g005200 Solanum pennellii HOM05D000068 ORTHO05D008004 3.2e-64 249.6 194 62.9
FAN03G0508 Fragaria x ananassa HOM05D000068 ORTHO05D008004 9.3e-64 248.1 228 58.3
AagrBONN_evm.TU.Sc2ySwM_369.367 Anthoceros agrestis HOM05D000068 ORTHO05D008004 1.6e-63 247.3 194 63.4
MD07G1262600 Malus domestica HOM05D000068 ORTHO05D008004 2.7e-63 246.5 232 56.0
Mapoly0091s0010 Marchantia polymorpha HOM05D000068 ORTHO05D008004 3.5e-63 246.1 194 62.4
HPP92_026378 Vanilla planifolia HOM05D000068 ORTHO05D008004 3.5e-63 246.1 194 63.9
Nitab4.5_0000832g0200 Nicotiana tabacum HOM05D000068 ORTHO05D008004 8.7e-62 241.5 195 63.1
Dinv28495 Davidia involucrata HOM05D000068 ORTHO05D008004 3.3e-61 239.6 207 60.9
MBI04_g45297_MAGBIO Magnolia biondii HOM05D000068 ORTHO05D008004 3.7e-60 236.1 278 50.0
SMO137G0363 Selaginella moellendorffii HOM05D000068 ORTHO05D008004 3.7e-60 236.1 209 58.4
DCAR_018154 Daucus carota HOM05D000068 ORTHO05D008004 3.4e-58 229.6 194 62.9
RcHm_v2.0_Chr1g0376591 Rosa chinensis HOM05D000068 ORTHO05D008004 3.4e-58 229.6 205 60.5
Lj1A990G57 Lonicera japonica HOM05D000068 ORTHO05D008004 3.8e-57 226.1 194 59.3
arahy.Tifrunner.gnm1.ann1.4DG32P Arachis hypogaea HOM05D000068 ORTHO05D008004 1.3e-54 217.6 212 55.7
Lsat_1_v5_gn_9_53861 Lactuca sativa HOM05D000068 ORTHO05D008004 6.7e-54 215.3 197 56.9
arahy.Tifrunner.gnm1.ann1.9PJ8QM Arachis hypogaea HOM05D000068 ORTHO05D008004 7.4e-53 211.8 216 54.6
ClCG01G005380 Citrullus lanatus HOM05D000068 ORTHO05D008004 4.9e-49 199.1 219 50.2
AUR62021245 Chenopodium quinoa HOM05D000068 ORTHO05D008004 6.5e-49 198.7 194 55.7
Peaxi162Scf00648g00223 Petunia axillaris HOM05D000068 ORTHO05D008004 2.5e-48 196.8 194 56.2
COL.COLO4_14251 Corchorus olitorius HOM05D000068 ORTHO05D008004 4.6e-47 192.6 194 55.7
vmacro06750 Vaccinium macrocarpon HOM05D000068 ORTHO05D008004 5.1e-46 189.1 251 43.4
SGA_v2.0_scaffold2G01086 Striga asiatica HOM05D000068 ORTHO05D008004 2.5e-45 186.8 177 57.1
SalBow4G2416 Salvia bowleyana HOM05D000068 ORTHO05D008004 3.1e-43 179.9 193 54.4
PSO478G5089 Papaver somniferum HOM05D000068 ORTHO05D008004 6.9e-43 178.7 141 66.0
SalBow8G3732 Salvia bowleyana HOM05D000068 ORTHO05D008004 6.9e-43 178.7 193 53.4
Nitab4.5_0008764g0030 Nicotiana tabacum HOM05D000068 ORTHO05D008004 8.5e-41 171.8 206 49.0
Hma1.2p1_0270F.1_g108540 Hydrangea macrophylla HOM05D000068 ORTHO05D008004 3.6e-39 166.4 117 73.5
Rhsim03G0176200 Rhododendron simsii HOM05D000068 ORTHO05D008004 2.3e-38 163.7 343 35.0
PSO782G4838 Papaver somniferum HOM05D000068 ORTHO05D008004 2.5e-37 160.2 132 65.9
CBR_g55235 Chara braunii HOM05D000068 ORTHO05D008004 3.3e-37 159.8 177 43.5
Hund04697 Selenicereus undatus HOM05D000068 ORTHO05D008004 5.3e-35 152.5 231 42.9
EL10Ac3g05681 Beta vulgaris HOM05D000068 ORTHO05D008004 4.2e-32 142.9 104 61.5
MCO12G148 Micromonas commoda HOM05D000068 ORTHO05D008004 9.4e-32 141.7 207 37.7
MELO3C005390.2 Cucumis melo HOM05D000068 ORTHO05D008004 1.7e-25 120.9 93 67.7
PSO782G0014 Papaver somniferum HOM05D000068 ORTHO05D008004 1.3e-20 104.8 69 69.6
PGSC0003DMG400014306 Solanum tuberosum HOM05D000068 ORTHO05D008004 1.4e-19 101.3 69 63.8
Ah.13g067950 Amaranthus hybridus HOM05D000068 ORTHO05D008004 3.8e-17 93.2 64 70.3
arahy.Tifrunner.gnm1.ann1.U3B0HF Arachis hypogaea HOM05D003842 ORTHO05D026908 3.2e-16 90.1 74 63.5
CAN.G548.21 Capsicum annuum HOM05D000068 ORTHO05D008004 4.2e-16 89.7 64 70.3
Ah.13g067960 Amaranthus hybridus HOM05D001521 ORTHO05D001342 7.2e-16 89.0 96 46.9
EL10As6g23676 Beta vulgaris HOM05D001894 ORTHO05D026908 2.3e-14 84.0 83 53.0
AUR62016039 Chenopodium quinoa HOM05D000068 ORTHO05D008004 1.7e-12 77.8 55 67.3
arahy.Tifrunner.gnm1.ann1.Z72FSA Arachis hypogaea HOM05D003842 ORTHO05D026908 2.2e-12 77.4 59 67.8
Phvul.003G183200 Phaseolus vulgaris HOM05D000068 ORTHO05D004505 5.5e-08 62.8 152 31.6
Ciclev10019251m.g Citrus clementina HOM05D000068 ORTHO05D004505 7.2e-08 62.4 193 29.0
Lj5A134G71 Lonicera japonica HOM05D000068 ORTHO05D004505 7.2e-08 62.4 205 26.8
VMungo1215G0543 Vigna mungo HOM05D000068 ORTHO05D004505 7.2e-08 62.4 152 31.6
Actinidia18979 Actinidia chinensis HOM05D000068 ORTHO05D004505 9.4e-08 62.0 202 28.7
Glyma.17G080400 Glycine max HOM05D000068 ORTHO05D004505 9.4e-08 62.0 152 30.9
arahy.Tifrunner.gnm1.ann1.G2555N Arachis hypogaea HOM05D000068 ORTHO05D008004 1.2e-07 61.6 65 52.3
Gohir.A07G067200 Gossypium hirsutum HOM05D000068 ORTHO05D004505 1.2e-07 61.6 211 27.5
Gohir.D07G071800 Gossypium hirsutum HOM05D000068 ORTHO05D004505 1.2e-07 61.6 211 27.5
Gorai.001G075900 Gossypium raimondii HOM05D000068 ORTHO05D004505 1.2e-07 61.6 211 27.5
Hund02568 Selenicereus undatus HOM05D000068 ORTHO05D004505 1.2e-07 61.6 164 30.5
Actinidia35044 Actinidia chinensis HOM05D000068 ORTHO05D004505 1.6e-07 61.2 175 28.6
CsaV3_1G006130 Cucumis sativus L. HOM05D000068 ORTHO05D004505 1.6e-07 61.2 143 31.5
Glyma.05G019400 Glycine max HOM05D000068 ORTHO05D004505 1.6e-07 61.2 152 30.9
Zm00001eb214670 Zea mays HOM05D000068 ORTHO05D004505 1.6e-07 61.2 143 32.2
Os03g0755100 Oryza sativa ssp. japonica HOM05D000068 ORTHO05D004505 2.1e-07 60.8 166 30.1
CSS0014152 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D004505 2.7e-07 60.5 305 23.6
MELO3C002042.2 Cucumis melo HOM05D000068 ORTHO05D004505 2.7e-07 60.5 143 30.8
Oeu057200.2 Olea europaea HOM05D000068 ORTHO05D004505 2.7e-07 60.5 186 28.5
ATR0827G077 Amborella trichopoda HOM05D000068 ORTHO05D004505 3.6e-07 60.1 166 28.9
MSTRG.11332 Avicennia marina HOM05D000068 ORTHO05D004505 4.7e-07 59.7 202 28.7
SalBow5G3913 Salvia bowleyana HOM05D000068 ORTHO05D004505 6.1e-07 59.3 166 28.9
Ca_21761_v3 Cicer arietinum L. HOM05D000068 ORTHO05D004505 8.0e-07 58.9 152 30.9
Eucgr.K02537 Eucalyptus grandis HOM05D000068 ORTHO05D004505 8.0e-07 58.9 176 28.4
Medtr4g109720 Medicago truncatula HOM05D000068 ORTHO05D004505 8.0e-07 58.9 152 30.3
GSVIVG01008121001 Vitis vinifera HOM05D000068 ORTHO05D004505 8.0e-07 58.9 176 28.4
BcaC02g09680 Brassica carinata HOM05D000068 ORTHO05D004505 1.4e-06 58.2 143 30.8
A04p11850 Brassica napus HOM05D000068 ORTHO05D004505 1.4e-06 58.2 143 30.8
C04p45520 Brassica napus HOM05D000068 ORTHO05D004505 1.4e-06 58.2 143 30.8
BolC4t26136H Brassica oleracea HOM05D000068 ORTHO05D004505 1.4e-06 58.2 143 30.8
BraA04t16851Z Brassica rapa HOM05D000068 ORTHO05D004505 1.4e-06 58.2 143 30.8
ECA233G1111 Erigeron canadensis HOM05D000068 ORTHO05D004505 1.4e-06 58.2 166 28.3
Hma1.2p1_0322F.1_g124590 Hydrangea macrophylla HOM05D000068 ORTHO05D004505 1.4e-06 58.2 205 26.3
Peaxi162Scf00201g00424 Petunia axillaris HOM05D000068 ORTHO05D004505 2.3e-06 57.4 174 28.2
AL7G51410 Arabidopsis lyrata HOM05D000068 ORTHO05D004505 3.0e-06 57.0 143 30.1
Cc00_g03450 Coffea canephora HOM05D000068 ORTHO05D004505 3.0e-06 57.0 166 29.5
TPR.G1996 Trifolium pratense HOM05D000068 ORTHO05D004505 3.0e-06 57.0 152 30.3
Lj4g0022546 Lotus japonicus HOM05D000068 ORTHO05D004505 4.0e-06 56.6 193 28.0
PSO339G1772 Papaver somniferum HOM05D000068 ORTHO05D004505 4.0e-06 56.6 143 30.1
PSO478G0123 Papaver somniferum HOM05D000068 ORTHO05D004505 4.0e-06 56.6 143 30.1
HPP92_019346 Vanilla planifolia HOM05D000068 ORTHO05D004505 4.0e-06 56.6 175 29.1
SGA_v2.0_scaffold733G53532 Striga asiatica HOM05D000068 ORTHO05D004505 5.2e-06 56.2 143 30.1
arahy.Tifrunner.gnm1.ann1.6K2AQG Arachis hypogaea HOM05D000068 ORTHO05D004505 6.8e-06 55.8 176 27.3
arahy.Tifrunner.gnm1.ann1.ZGC9F0 Arachis hypogaea HOM05D000068 ORTHO05D004505 6.8e-06 55.8 176 27.3
Ah.11g047580 Amaranthus hybridus HOM05D000068 ORTHO05D004505 8.8e-06 55.5 150 29.3


User provided reference genes

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