Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3408 Ceratophyllum demersum HOM05D008044 ORTHO05D010106 7.6e-64 246.9 116 100.0
Manes.01G037300 Manihot esculenta HOM05D008044 ORTHO05D010106 1.5e-32 142.9 112 59.8
Dinv29244 Davidia involucrata HOM05D008044 ORTHO05D010106 6.5e-31 137.5 110 59.1
CiPaw.06G043900 Carya illinoinensis HOM05D008044 ORTHO05D010106 1.5e-30 136.3 110 58.2
AUR62006056 Chenopodium quinoa HOM05D008044 ORTHO05D010106 9.4e-30 133.7 110 59.1
AUR62035573 Chenopodium quinoa HOM05D008044 ORTHO05D010106 9.4e-30 133.7 113 57.5
TPR.G33642 Trifolium pratense HOM05D008044 ORTHO05D010106 9.4e-30 133.7 111 55.0
CSS0007407 Camellia sinensis var. sinensis HOM05D008044 ORTHO05D010106 2.7e-29 132.1 110 55.5
Sed0010771 Sechium edule HOM05D008044 ORTHO05D010106 2.7e-29 132.1 108 56.5
Glyma.06G132400 Glycine max HOM05D008044 ORTHO05D010106 4.7e-29 131.3 111 55.0
MELO3C019381.2 Cucumis melo HOM05D008044 ORTHO05D010106 6.1e-29 131.0 110 58.2
CsaV3_3G019660 Cucumis sativus L. HOM05D008044 ORTHO05D010106 6.1e-29 131.0 108 58.3
Glyma.04G232600 Glycine max HOM05D008044 ORTHO05D010106 6.1e-29 131.0 111 55.0
Atru.chr12.2313 Acer truncatum HOM05D008044 ORTHO05D010106 1.0e-28 130.2 111 56.8
Phvul.009G048200 Phaseolus vulgaris HOM05D008044 ORTHO05D010106 1.0e-28 130.2 111 55.9
GSVIVG01038604001 Vitis vinifera HOM05D008044 ORTHO05D010106 1.0e-28 130.2 111 56.8
Ciclev10022664m.g Citrus clementina HOM05D008044 ORTHO05D010106 2.3e-28 129.0 110 54.5
arahy.Tifrunner.gnm1.ann1.QU8WMY Arachis hypogaea HOM05D008044 ORTHO05D010106 3.0e-28 128.6 110 54.5
Lalb_Chr23g0271711 Lupinus albus HOM05D008044 ORTHO05D010106 3.0e-28 128.6 110 56.4
Thecc.03G204500 Theobroma cacao HOM05D008044 ORTHO05D010106 3.0e-28 128.6 116 52.6
DCAR_020347 Daucus carota HOM05D008044 ORTHO05D010106 3.9e-28 128.3 114 51.8
Lsat_1_v5_gn_2_135221 Lactuca sativa HOM05D008044 ORTHO05D010106 3.9e-28 128.3 107 56.1
PSO782G0454 Papaver somniferum HOM05D008044 ORTHO05D010106 3.9e-28 128.3 111 55.0
Dinv35361 Davidia involucrata HOM05D008044 ORTHO05D010106 5.2e-28 127.9 105 54.3
Duzib205G1586 Durio zibethinus HOM05D008044 ORTHO05D010106 5.2e-28 127.9 116 53.4
Eucgr.A01433 Eucalyptus grandis HOM05D008044 ORTHO05D010106 5.2e-28 127.9 105 56.2
Medtr3g092020 Medicago truncatula HOM05D008044 ORTHO05D010106 5.2e-28 127.9 111 51.4
Sabra15G0006200 Salix brachista HOM05D002361 ORTHO05D002843 5.2e-28 127.9 112 57.1
arahy.Tifrunner.gnm1.ann1.4AVA7A Arachis hypogaea HOM05D008044 ORTHO05D010106 8.8e-28 127.1 110 54.5
TAR636G0016 Trochodendron aralioides HOM05D008044 ORTHO05D010106 1.5e-27 126.3 105 57.1
PSO063G1947 Papaver somniferum HOM05D008044 ORTHO05D010106 2.0e-27 125.9 112 53.6
HanXRQChr04g0100441 Helianthus annuus HOM05D008044 ORTHO05D010106 2.6e-27 125.6 108 53.7
Lj1g0025539 Lotus japonicus HOM05D008044 ORTHO05D010106 2.6e-27 125.6 112 52.7
Sc25g0000980 Simmondsia chinensis HOM05D008044 ORTHO05D010106 2.6e-27 125.6 106 56.6
SGA_v2.0_scaffold18G08440 Striga asiatica HOM05D008044 ORTHO05D010106 3.3e-27 125.2 109 56.0
Psat5g074880 Pisum sativum HOM05D008044 ORTHO05D010106 4.4e-27 124.8 111 53.2
Gorai.003G122500 Gossypium raimondii HOM05D008044 ORTHO05D010106 7.4e-27 124.0 117 50.4
Gohir.D03G116200 Gossypium hirsutum HOM05D008044 ORTHO05D010106 9.7e-27 123.6 117 50.4
MSTRG.8632 Avicennia marina HOM05D008044 ORTHO05D010106 1.3e-26 123.2 112 50.9
Hund11636 Selenicereus undatus HOM05D008044 ORTHO05D010106 1.3e-26 123.2 110 52.7
PGSC0003DMG400018537 Solanum tuberosum HOM05D008044 ORTHO05D010106 2.2e-26 122.5 115 50.4
Gohir.A03G051500 Gossypium hirsutum HOM05D008044 ORTHO05D010106 3.7e-26 121.7 117 49.6
SGA_v2.0_scaffold44G16829 Striga asiatica HOM05D008044 ORTHO05D010106 4.8e-26 121.3 105 57.1
CAN.G481.61 Capsicum annuum HOM05D008044 ORTHO05D010106 8.2e-26 120.6 113 54.0
PGR042G2636 Punica granatum HOM05D008044 ORTHO05D010106 1.1e-25 120.2 110 52.7
Cc02_g01150 Coffea canephora HOM05D008044 ORTHO05D010106 1.8e-25 119.4 108 52.8
ATR0620G028 Amborella trichopoda HOM05D008044 ORTHO05D010106 5.3e-25 117.9 105 53.3
Zm00001eb187590 Zea mays HOM05D008044 ORTHO05D010106 1.2e-24 116.7 109 47.7
Aqoxy5G02418 Aquilegia oxysepala HOM05D008044 ORTHO05D010106 1.6e-24 116.3 110 50.0
Nitab4.5_0008197g0010 Nicotiana tabacum HOM05D008044 ORTHO05D010106 1.6e-24 116.3 105 53.3
QL09p007646 Quercus lobata HOM05D008044 ORTHO05D010106 1.6e-24 116.3 142 44.4
Solyc03g082670.3 Solanum lycopersicum HOM05D008044 ORTHO05D010106 2.0e-24 115.9 117 49.6
EL10Ac3g05235 Beta vulgaris HOM05D008044 ORTHO05D010106 4.5e-24 114.8 91 59.3
CANSAT21G1192 Cannabis sativa HOM05D008044 ORTHO05D010106 5.9e-24 114.4 110 51.8
Cfa016194 Carpinus fangiana HOM05D008044 ORTHO05D010106 2.2e-23 112.5 110 52.7
Migut.F00176 Erythranthe guttata HOM05D008044 ORTHO05D010106 2.2e-23 112.5 105 49.5
ClCG05G009120 Citrullus lanatus HOM05D008044 ORTHO05D010106 7.2e-22 107.5 83 59.0
SalBow4G0010 Salvia bowleyana HOM05D008044 ORTHO05D010106 9.4e-22 107.1 112 48.2
CiPaw.05G200900 Carya illinoinensis HOM05D008044 ORTHO05D010106 3.6e-21 105.1 110 49.1
SEGI_00721 Sequoiadendron giganteum HOM05D008044 ORTHO05D010106 2.3e-20 102.4 105 47.6
Oeu037043.1 Olea europaea HOM05D001626 ORTHO05D010106 4.0e-20 101.7 86 53.5
Haze_00261 Corylus avellana HOM05D008044 ORTHO05D010106 5.7e-19 97.8 82 56.1
Zm00001eb421680 Zea mays HOM05D001260 ORTHO05D010106 1.3e-18 96.7 94 45.7
Actinidia08675 Actinidia chinensis HOM05D008044 ORTHO05D010106 2.8e-18 95.5 82 52.4
Nitab4.5_0010367g0020 Nicotiana tabacum HOM05D008044 ORTHO05D010106 2.8e-18 95.5 80 53.8
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 1.8e-17 92.8 79 55.7
Ca_16735_v3 Cicer arietinum L. HOM05D008044 ORTHO05D010106 5.3e-17 91.3 78 53.8
MBI04_g11918_MAGBIO Magnolia biondii HOM05D008044 ORTHO05D010106 1.6e-16 89.7 134 36.6
Hma1.2p1_0512F.1_g169310 Hydrangea macrophylla HOM05D008044 ORTHO05D010106 2.0e-16 89.4 76 53.9
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 7.7e-16 87.4 87 48.3
Ah.07g205140 Amaranthus hybridus HOM05D008044 ORTHO05D010106 2.2e-15 85.9 110 41.8
Mapoly0007s0051 Marchantia polymorpha HOM05D008044 ORTHO05D010106 2.9e-15 85.5 112 37.5
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 3.8e-15 85.1 82 50.0
Sopen03g022430 Solanum pennellii HOM05D008044 ORTHO05D010106 1.5e-14 83.2 85 48.2
Os02g0686500 Oryza sativa ssp. japonica HOM05D008044 ORTHO05D010106 5.5e-14 81.3 79 44.3
Peaxi162Scf00740g00427 Petunia axillaris HOM05D008044 ORTHO05D010106 2.3e-12 75.9 79 46.8
Lsat_1_v5_gn_9_14140 Lactuca sativa HOM05D008044 ORTHO05D010106 2.4e-09 65.9 83 45.8


User provided reference genes

Program Settings