Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 3.7e-117 424.9 210 100.0
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 2.9e-77 292.4 185 81.6
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 3.5e-67 258.8 216 59.3
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 1.0e-66 257.3 215 59.5
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 8.6e-66 254.2 225 56.4
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 1.5e-65 253.4 216 56.5
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 4.0e-63 245.4 219 57.5
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 4.0e-63 245.4 216 56.9
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 3.4e-62 242.3 216 57.4
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 4.4e-62 241.9 219 57.1
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 1.3e-61 240.4 206 57.8
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 2.9e-61 239.2 216 56.5
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 6.4e-61 238.0 219 54.3
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 1.1e-60 237.3 222 56.8
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 1.1e-60 237.3 222 56.8
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 1.1e-60 237.3 216 56.0
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 1.4e-60 236.9 219 55.7
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 1.9e-60 236.5 219 55.3
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 7.1e-60 234.6 216 57.4
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 7.1e-60 234.6 216 57.4
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 1.2e-59 233.8 216 53.2
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 3.5e-59 232.3 222 54.5
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 6.0e-59 231.5 220 55.9
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 7.8e-59 231.1 216 55.6
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 7.8e-59 231.1 216 56.0
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 1.7e-58 229.9 213 54.5
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 2.3e-58 229.6 214 55.1
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 3.0e-58 229.2 216 54.2
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 5.1e-58 228.4 213 54.9
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 6.6e-58 228.0 216 54.6
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 8.7e-58 227.6 217 54.4
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 1.5e-57 226.9 218 53.7
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 2.5e-57 226.1 219 53.4
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 2.5e-57 226.1 216 54.6
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 2.5e-57 226.1 224 51.8
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 3.3e-57 225.7 232 50.0
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 3.3e-57 225.7 219 53.4
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 3.3e-57 225.7 216 52.3
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 4.3e-57 225.3 220 55.0
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 5.6e-57 224.9 215 53.5
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 7.3e-57 224.6 218 53.7
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 9.6e-57 224.2 218 53.2
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 1.3e-56 223.8 219 52.5
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 2.1e-56 223.0 206 52.9
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 2.8e-56 222.6 213 53.5
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 2.8e-56 222.6 224 51.3
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 3.6e-56 222.2 213 54.0
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 3.6e-56 222.2 216 53.7
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 4.8e-56 221.9 206 52.4
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 8.1e-56 221.1 216 50.9
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 1.1e-55 220.7 216 50.5
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 1.8e-55 219.9 206 52.4
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 2.4e-55 219.5 207 54.1
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 2.4e-55 219.5 213 52.6
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 9.0e-55 217.6 221 52.9
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 9.0e-55 217.6 215 52.6
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 1.2e-54 217.2 221 50.2
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 1.2e-54 217.2 197 55.3
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 1.2e-54 217.2 213 51.6
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 2.0e-54 216.5 216 54.6
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 2.0e-54 216.5 214 50.9
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 3.4e-54 215.7 213 52.1
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 3.4e-54 215.7 213 52.1
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 3.4e-54 215.7 215 51.6
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 5.8e-54 214.9 184 57.6
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 7.6e-54 214.5 213 51.6
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 7.6e-54 214.5 222 50.9
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 7.6e-54 214.5 221 49.8
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 7.6e-54 214.5 221 49.8
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 7.6e-54 214.5 220 51.4
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 9.9e-54 214.2 215 52.1
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 9.9e-54 214.2 213 50.7
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 9.9e-54 214.2 213 51.2
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 1.3e-53 213.8 215 51.6
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 2.2e-53 213.0 213 50.2
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 2.9e-53 212.6 215 51.2
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 4.9e-53 211.8 215 51.2
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 6.4e-53 211.5 217 50.2
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 6.4e-53 211.5 222 49.5
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 6.4e-53 211.5 213 51.6
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 8.4e-53 211.1 215 51.2
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 8.4e-53 211.1 220 51.4
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 8.4e-53 211.1 215 52.1
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 1.1e-52 210.7 221 51.6
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 1.1e-52 210.7 221 51.6
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 1.4e-52 210.3 221 51.6
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 2.4e-52 209.5 215 51.2
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 3.2e-52 209.1 220 51.8
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 3.2e-52 209.1 206 51.0
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 5.4e-52 208.4 216 51.9
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 7.1e-52 208.0 215 51.2
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 9.3e-52 207.6 219 49.3
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 1.2e-51 207.2 220 51.4
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 1.6e-51 206.8 213 48.8
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 2.1e-51 206.5 198 54.5
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 2.1e-51 206.5 209 50.7
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 3.5e-51 205.7 217 50.2
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 4.6e-51 205.3 222 48.6
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 4.6e-51 205.3 218 48.2
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 1.0e-50 204.1 212 50.5
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 1.7e-50 203.4 215 49.3
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 3.0e-50 202.6 208 49.5
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 3.9e-50 202.2 220 49.5
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 5.1e-50 201.8 220 50.5
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 5.1e-50 201.8 207 50.2
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 1.1e-49 200.7 220 50.0
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 1.9e-49 199.9 216 50.9
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 9.6e-49 197.6 237 47.3
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 9.6e-49 197.6 213 48.8
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 1.3e-48 197.2 217 49.3
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 1.6e-48 196.8 198 52.0
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 2.1e-48 196.4 200 50.5
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 3.6e-48 195.7 230 47.0
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 3.6e-48 195.7 190 53.7
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 4.8e-48 195.3 183 51.9
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 6.2e-48 194.9 213 47.4
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 6.2e-48 194.9 204 51.0
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 8.1e-48 194.5 212 50.5
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 3.4e-46 189.1 195 48.7
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 4.9e-45 185.3 196 49.5
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 6.4e-45 184.9 171 54.4
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 1.2e-43 180.6 253 41.9
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 7.9e-43 177.9 200 45.0
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 2.3e-42 176.4 216 44.0
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 1.9e-41 173.3 198 47.5
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 1.9e-41 173.3 151 57.6
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 2.1e-40 169.9 229 43.7
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 4.8e-40 168.7 154 53.2
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.0e-39 165.6 202 41.6
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.5e-38 163.7 202 40.1
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.5e-36 156.4 203 39.9
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 9.3e-36 154.5 188 44.7
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 1.0e-34 151.0 196 40.8
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 4.3e-33 145.6 147 49.0
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 1.8e-31 140.2 210 41.9
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 2.4e-31 139.8 217 39.2
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 1.5e-30 137.1 149 48.3
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 4.6e-27 125.6 129 51.2
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 7.9e-27 124.8 110 56.4
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 1.2e-22 110.9 173 37.6
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.4e-20 104.0 151 35.8
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 1.9e-20 103.6 81 63.0
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 9.4e-20 101.3 192 34.4
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 9.4e-20 101.3 113 46.9
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 2.1e-19 100.1 143 37.8
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 4.6e-19 99.0 82 57.3
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 6.1e-19 98.6 82 58.5
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 1.8e-18 97.1 87 49.4
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 2.3e-18 96.7 87 49.4
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 2.0e-14 83.6 215 29.3
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 5.9e-06 55.5 52 55.8


User provided reference genes

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