Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1501.5 773 100.0
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1372.8 794 90.7
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 4.0e-302 1041.2 805 70.7
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 4.7e-295 1017.7 787 70.4
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 8.1e-295 1016.9 815 69.2
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 4.0e-294 1014.6 804 69.7
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 5.2e-294 1014.2 801 68.3
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 4.2e-291 1004.6 801 69.2
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 7.1e-291 1003.8 801 68.4
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 2.1e-290 1002.3 803 67.4
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 2.1e-290 1002.3 803 68.2
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 3.5e-290 1001.5 803 68.4
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 3.0e-289 998.4 801 68.3
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 1.9e-288 995.7 813 67.7
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 2.1e-287 992.3 799 68.5
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 4.8e-287 991.1 803 67.9
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 6.2e-287 990.7 800 67.0
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 6.2e-287 990.7 801 67.9
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 8.1e-287 990.3 800 67.1
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 1.1e-286 989.9 798 67.9
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 2.0e-285 985.7 800 68.4
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 7.6e-285 983.8 803 67.6
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 9.9e-285 983.4 797 68.3
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 9.9e-285 983.4 797 68.0
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 2.9e-284 981.9 805 67.2
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 3.8e-284 981.5 805 67.2
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 1.1e-283 979.9 803 66.4
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 2.4e-283 978.8 801 67.5
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 2.4e-283 978.8 802 67.7
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 3.2e-283 978.4 800 66.1
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 4.2e-283 978.0 801 66.8
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 7.1e-283 977.2 801 67.4
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 7.1e-283 977.2 801 66.7
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 6.0e-282 974.2 800 67.9
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 6.0e-282 974.2 786 67.2
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 7.9e-282 973.8 800 66.9
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 7.9e-282 973.8 800 67.6
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 7.9e-282 973.8 800 67.8
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 1.5e-280 969.5 800 67.6
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 3.3e-280 968.4 801 67.0
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 1.6e-279 966.1 743 70.0
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 1.6e-279 966.1 784 67.0
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 6.2e-279 964.1 788 68.3
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 2.4e-278 962.2 813 66.2
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 6.9e-278 960.7 799 65.0
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 9.0e-278 960.3 809 65.6
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 1.2e-277 959.9 809 66.3
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 2.6e-277 958.7 812 65.5
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 3.4e-277 958.4 783 67.6
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 4.5e-277 958.0 805 67.0
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 5.8e-277 957.6 806 64.9
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 5.8e-277 957.6 813 65.4
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 1.3e-276 956.4 786 66.4
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 3.8e-276 954.9 799 65.1
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 6.4e-276 954.1 780 68.2
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 1.4e-275 953.0 806 65.9
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 2.4e-275 952.2 807 66.2
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 5.5e-275 951.0 791 65.6
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 5.5e-275 951.0 821 64.9
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 9.3e-275 950.3 802 66.0
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 1.2e-274 949.9 802 65.8
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 2.7e-274 948.7 805 65.8
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 3.5e-274 948.3 787 67.0
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 4.6e-274 948.0 804 65.9
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 7.9e-274 947.2 842 63.9
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 1.8e-273 946.0 804 66.2
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 2.3e-273 945.7 789 66.4
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 3.0e-273 945.3 804 65.8
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 3.0e-273 945.3 775 66.2
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 3.9e-273 944.9 809 64.9
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 5.1e-273 944.5 810 64.9
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 5.1e-273 944.5 803 65.6
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 1.9e-272 942.6 774 66.3
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 1.9e-272 942.6 800 65.2
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 7.4e-272 940.6 801 64.4
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 1.3e-271 939.9 791 64.7
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 2.1e-271 939.1 793 65.6
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 3.7e-271 938.3 800 65.1
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 4.8e-271 937.9 803 64.5
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 6.2e-271 937.6 804 65.4
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 1.1e-270 936.8 801 64.5
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 1.8e-270 936.0 800 65.1
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 2.4e-270 935.6 804 65.2
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 3.1e-270 935.3 771 65.9
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 4.0e-270 934.9 805 65.3
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 6.9e-270 934.1 802 64.5
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 6.9e-270 934.1 803 64.5
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 9.0e-270 933.7 797 65.6
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 1.2e-269 933.3 770 65.6
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 2.0e-269 932.6 792 65.4
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 2.6e-269 932.2 802 64.0
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 2.6e-269 932.2 793 65.3
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 5.8e-269 931.0 801 64.4
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 7.6e-269 930.6 773 65.8
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 1.0e-268 930.2 780 66.0
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 2.2e-268 929.1 771 65.5
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 2.9e-268 928.7 784 64.8
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 2.9e-268 928.7 705 70.4
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 4.9e-268 927.9 773 66.1
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 1.1e-267 926.8 845 62.8
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 2.7e-266 922.2 810 64.6
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 2.7e-266 922.2 810 64.6
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 3.9e-265 918.3 787 65.3
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 1.9e-264 916.0 804 64.4
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 5.7e-264 914.4 796 64.6
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 9.7e-264 913.7 796 63.4
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 4.8e-263 911.4 807 63.6
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 4.8e-263 911.4 793 63.7
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 8.2e-263 910.6 800 63.1
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 2.4e-262 909.1 798 63.3
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 4.5e-261 904.8 805 63.4
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 7.6e-261 904.0 801 62.8
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 7.6e-261 904.0 801 62.8
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 6.5e-260 901.0 838 60.0
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 1.4e-257 893.3 796 61.1
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 3.0e-257 892.1 795 61.4
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 1.5e-256 889.8 788 62.1
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 9.7e-256 887.1 803 62.5
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 3.7e-255 885.2 792 63.3
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 9.1e-254 880.6 787 61.5
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 2.6e-253 879.0 778 63.5
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 3.8e-252 875.2 808 61.8
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 9.4e-251 870.5 804 60.1
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 8.8e-249 864.0 768 62.1
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 4.5e-245 851.7 804 59.5
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 5.7e-232 808.1 712 66.3
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 3.5e-221 772.3 808 56.8
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 1.3e-220 770.4 688 60.9
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 1.4e-214 750.4 795 54.1
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 1.7e-212 743.4 780 57.3
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 4.3e-211 738.8 782 56.6
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 2.8e-210 736.1 792 52.4
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 4.7e-210 735.3 615 67.0
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 6.1e-210 734.9 658 60.6
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 4.4e-208 728.8 725 58.9
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 2.4e-206 723.0 755 53.5
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 5.6e-195 685.3 796 50.6
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 4.9e-191 672.2 788 50.4
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 1.6e-189 667.2 813 51.0
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.4e-185 653.3 760 51.2
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 7.8e-181 638.3 756 49.7
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.4e-166 590.9 769 48.8
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.8e-164 583.9 738 47.8
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 9.9e-160 568.2 727 52.1
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 2.2e-159 567.0 801 45.6
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 1.3e-156 557.8 617 52.8
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.4e-140 504.6 618 48.7
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 9.7e-139 498.4 662 46.5
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 2.8e-138 496.9 754 43.9
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.4e-137 493.8 608 49.2
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 1.8e-129 467.6 419 61.6
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 6.5e-111 406.0 631 41.4
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 3.4e-107 393.7 948 34.5
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 9.5e-86 322.4 286 63.6
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.7e-82 311.6 289 58.1
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 4.9e-74 283.5 245 66.9
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 3.2e-73 280.8 275 59.6
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 2.0e-67 261.5 674 32.3
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 3.3e-62 244.2 269 52.4
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 1.3e-53 215.7 174 63.8
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 6.2e-53 213.4 251 54.6
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 2.2e-50 204.9 516 31.4
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 6.9e-44 183.3 154 56.5
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 1.4e-41 175.6 176 54.5
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 1.2e-40 172.6 153 60.1
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 1.3e-37 162.5 726 26.3
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 2.2e-29 135.2 243 39.9
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 5.7e-14 84.0 62 72.6


User provided reference genes

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