Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 4.7e-74 281.2 149 100.0
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.2e-40 170.2 93 93.5
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.2e-40 170.2 93 93.5
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 2.7e-29 132.5 95 69.5
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 6.0e-29 131.3 93 69.9
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 6.0e-29 131.3 89 77.5
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 3.0e-28 129.0 93 68.8
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 3.0e-28 129.0 101 66.3
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 3.9e-28 128.6 101 65.3
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 6.6e-28 127.9 93 68.8
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 8.7e-28 127.5 98 69.4
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 8.7e-28 127.5 93 67.7
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 1.9e-27 126.3 81 80.2
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 3.3e-27 125.6 93 66.7
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 3.3e-27 125.6 93 66.7
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 3.3e-27 125.6 93 66.7
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 4.3e-27 125.2 103 62.1
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 4.3e-27 125.2 103 62.1
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 5.6e-27 124.8 129 54.3
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 5.6e-27 124.8 99 65.7
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 7.3e-27 124.4 90 68.9
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 9.6e-27 124.0 91 67.0
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 9.6e-27 124.0 91 67.0
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.2e-26 123.6 103 61.2
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.2e-26 123.6 103 61.2
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.1e-26 122.9 103 61.2
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 2.8e-26 122.5 93 64.5
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 6.2e-26 121.3 93 64.5
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 8.1e-26 120.9 93 62.4
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 8.1e-26 120.9 93 65.6
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 1.1e-25 120.6 93 63.4
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 1.1e-25 120.6 93 62.4
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 1.4e-25 120.2 93 64.5
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 2.4e-25 119.4 101 61.4
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 3.1e-25 119.0 93 64.5
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 3.1e-25 119.0 93 61.3
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 4.0e-25 118.6 93 62.4
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 4.0e-25 118.6 93 65.6
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 5.2e-25 118.2 92 66.3
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 5.2e-25 118.2 90 66.7
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 5.2e-25 118.2 88 70.5
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 6.9e-25 117.9 92 65.2
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 6.9e-25 117.9 90 65.6
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 2.0e-24 116.3 88 65.9
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 2.6e-24 115.9 90 63.3
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 3.4e-24 115.5 90 62.2
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 4.4e-24 115.2 92 62.0
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 5.8e-24 114.8 92 64.1
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 7.6e-24 114.4 93 62.4
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 9.9e-24 114.0 93 62.4
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 9.9e-24 114.0 94 64.9
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 9.9e-24 114.0 92 64.1
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 9.9e-24 114.0 93 62.4
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 1.3e-23 113.6 92 62.0
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 3.8e-23 112.1 91 62.6
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 4.9e-23 111.7 92 62.0
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 4.9e-23 111.7 92 62.0
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 6.4e-23 111.3 101 59.4
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 8.4e-23 110.9 93 61.3
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 8.4e-23 110.9 93 61.3
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 1.1e-22 110.5 93 61.3
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.9e-22 109.8 93 60.2
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.9e-22 109.8 93 60.2
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 1.9e-22 109.8 93 59.1
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 2.4e-22 109.4 93 61.3
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 3.2e-22 109.0 90 62.2
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 5.4e-22 108.2 93 61.3
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 5.4e-22 108.2 93 61.3
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 5.4e-22 108.2 93 61.3
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 1.6e-21 106.7 103 52.4
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.6e-21 106.7 60 91.7
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 4.6e-21 105.1 93 59.1
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 6.0e-21 104.8 93 60.2
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 7.8e-21 104.4 91 62.6
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 1.0e-20 104.0 99 55.6
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 1.7e-20 103.2 127 47.2
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 2.3e-20 102.8 97 54.6
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 3.0e-20 102.4 93 55.9
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 3.9e-20 102.1 127 46.5
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 3.9e-20 102.1 127 46.5
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 5.1e-20 101.7 89 57.3
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 6.6e-20 101.3 92 57.6
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 1.1e-19 100.5 93 57.0
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 1.5e-19 100.1 90 57.8
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 2.5e-19 99.4 89 55.1
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 3.3e-19 99.0 92 56.5
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 5.6e-19 98.2 90 52.2
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 5.6e-19 98.2 90 52.2
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 5.6e-19 98.2 90 52.2
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 5.6e-19 98.2 92 56.5
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 9.6e-19 97.4 90 57.8
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 9.6e-19 97.4 90 51.1
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 1.3e-18 97.1 90 51.1
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 1.3e-18 97.1 90 51.1
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 1.3e-18 97.1 90 51.1
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 1.3e-18 97.1 90 51.1
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 1.3e-18 97.1 90 51.1
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 1.3e-18 97.1 90 52.2
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 2.1e-18 96.3 90 50.0
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 2.8e-18 95.9 90 50.0
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 8.1e-18 94.4 92 48.9
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 2.4e-17 92.8 90 52.2
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 2.4e-17 92.8 100 48.0
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 3.1e-17 92.4 90 54.4
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 5.3e-17 91.7 100 49.0
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 9.0e-17 90.9 69 66.7
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 2.0e-16 89.7 100 46.0
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 2.6e-16 89.4 90 52.2
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 9.9e-16 87.4 90 50.0
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 2.2e-15 86.3 98 45.9
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 6.4e-15 84.7 60 68.3
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 5.4e-14 81.6 78 59.0
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 6.0e-13 78.2 72 59.7
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 9.6e-11 70.9 72 47.2
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 3.7e-10 68.9 90 41.1
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 8.1e-10 67.8 67 49.3
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 4.0e-09 65.5 34 91.2
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 1.7e-07 60.1 56 53.6
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 1.4e-06 57.0 75 40.0
SMO340G0059 Selaginella moellendorffii HOM05D000964 ORTHO05D003870 4.2e-06 55.5 80 41.2


User provided reference genes

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