Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1231.1 632 100.0
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1158.7 629 94.3
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 1.0e-247 860.1 633 69.4
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 8.8e-247 857.1 632 69.9
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 4.8e-245 851.3 630 69.5
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 1.9e-241 839.3 629 68.5
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 2.3e-239 832.4 640 66.9
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 3.0e-239 832.0 632 67.6
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 1.8e-236 822.8 632 66.3
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 5.3e-236 821.2 631 66.6
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 1.6e-235 819.7 650 64.5
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 2.6e-235 818.9 639 65.9
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 1.3e-234 816.6 632 65.3
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 6.5e-234 814.3 633 66.0
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 6.5e-234 814.3 633 65.9
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 2.5e-233 812.4 636 65.6
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 5.5e-233 811.2 639 66.0
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.6e-232 809.7 636 64.9
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 2.1e-232 809.3 634 65.8
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.3e-231 805.8 634 64.7
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 3.0e-231 805.4 636 64.6
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 6.7e-231 804.3 618 66.7
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 1.2e-230 803.5 634 64.7
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 1.5e-230 803.1 636 64.6
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 2.0e-230 802.7 653 64.3
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 2.6e-230 802.4 640 64.8
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 7.5e-230 800.8 635 66.3
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 7.5e-230 800.8 635 63.9
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 2.8e-229 798.9 646 64.4
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 4.8e-229 798.1 635 64.1
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 4.8e-229 798.1 636 64.0
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 1.1e-228 797.0 624 64.4
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 1.8e-228 796.2 634 65.3
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 9.1e-228 793.9 634 64.7
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 2.0e-227 792.7 635 64.3
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 5.9e-227 791.2 621 65.2
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 2.2e-226 789.3 630 63.5
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 1.5e-225 786.6 639 63.8
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 3.2e-225 785.4 630 64.0
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 4.2e-225 785.0 617 64.5
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 7.2e-225 784.3 632 63.4
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 7.2e-225 784.3 651 62.8
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 1.4e-223 780.0 632 63.0
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 1.4e-223 780.0 601 66.1
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 1.4e-223 780.0 617 64.5
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 1.8e-223 779.6 629 63.4
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 5.2e-223 778.1 631 63.1
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 5.2e-223 778.1 632 63.6
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 8.8e-223 777.3 638 62.5
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 8.8e-223 777.3 633 63.0
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 2.0e-222 776.2 619 64.1
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 2.0e-222 776.2 621 64.1
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 3.4e-222 775.4 652 61.7
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 1.3e-221 773.5 634 63.6
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 8.3e-221 770.8 629 63.0
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 4.1e-220 768.5 635 62.2
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 7.0e-220 767.7 632 62.3
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 7.0e-220 767.7 613 63.9
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 2.0e-219 766.1 637 63.0
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 2.7e-219 765.8 632 62.2
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 2.7e-219 765.8 633 62.6
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 3.5e-219 765.4 637 62.2
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 1.0e-218 763.8 632 62.3
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 1.0e-218 763.8 632 62.0
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 1.7e-218 763.1 715 57.5
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 2.2e-218 762.7 633 63.3
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 5.0e-218 761.5 637 61.9
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 9.5e-217 757.3 637 61.4
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 1.6e-216 756.5 637 61.5
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 3.6e-216 755.4 643 62.4
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 3.6e-216 755.4 629 61.4
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 2.3e-215 752.7 632 61.2
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 8.8e-215 750.7 617 62.1
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 4.4e-214 748.4 623 62.0
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 5.7e-214 748.0 636 61.3
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 7.5e-214 747.7 633 61.3
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 1.4e-212 743.4 638 60.8
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 1.8e-212 743.0 620 61.8
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 2.4e-212 742.7 637 60.6
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 5.4e-212 741.5 619 61.6
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 3.5e-211 738.8 631 61.2
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 3.5e-211 738.8 631 61.2
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 3.5e-211 738.8 640 60.5
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 7.8e-211 737.6 619 61.6
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 2.3e-210 736.1 704 56.4
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 5.0e-210 734.9 606 61.9
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 4.7e-208 728.4 635 60.0
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 1.4e-207 726.9 606 61.6
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 1.2e-206 723.8 634 60.1
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 4.4e-206 721.8 617 60.5
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 1.8e-204 716.5 621 59.6
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 4.1e-204 715.3 608 60.9
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 3.5e-203 712.2 606 60.6
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 2.5e-201 706.1 607 60.0
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 3.3e-201 705.7 632 59.0
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 3.3e-201 705.7 632 58.2
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 9.5e-201 704.1 606 60.1
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 6.2e-200 701.4 607 59.8
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 6.2e-200 701.4 607 59.8
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 6.8e-199 698.0 565 63.0
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 2.9e-197 692.6 628 57.8
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 2.9e-197 692.6 604 59.1
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 1.3e-194 683.7 632 56.0
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 2.2e-189 666.4 619 55.3
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 2.8e-184 649.4 535 61.3
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 2.2e-181 639.8 618 54.7
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 4.1e-180 635.6 649 54.7
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 1.1e-169 600.9 462 66.5
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 2.6e-166 589.7 632 50.9
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 1.2e-150 537.7 626 50.2
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 2.2e-149 533.5 427 63.2
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 2.5e-148 530.0 643 46.5
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 2.7e-147 526.6 632 46.5
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 1.8e-143 513.8 618 45.0
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 9.0e-143 511.5 642 43.8
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 2.9e-141 506.5 533 52.9
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 1.4e-140 504.2 358 69.8
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 7.2e-140 501.9 855 39.3
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 2.1e-139 500.4 359 68.8
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 3.1e-74 283.9 280 53.6
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 1.5e-68 265.0 269 53.9
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 2.5e-52 211.1 201 53.7
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 4.0e-50 203.8 123 80.5
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 4.5e-41 173.7 130 62.3
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 1.1e-36 159.1 171 49.7
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 6.2e-35 153.3 176 46.0
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 2.1e-22 111.7 70 82.9
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 7.4e-20 103.2 71 73.2
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 1.1e-18 99.4 98 53.1
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 4.1e-18 97.4 70 68.6
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 4.1e-18 97.4 91 57.1
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 7.7e-17 93.2 70 65.7
PRCOL_00001722 Prasinoderma coloniale HOM05D000936 ORTHO05D005107 1.4e-15 89.0 585 23.4
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 3.3e-12 77.8 205 27.3
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 2.8e-11 74.7 66 59.1


User provided reference genes

Program Settings