Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G1942 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 0.0e+00 1475.7 826 100.0
TAR376G0643 Trochodendron aralioides HOM05D003747 ORTHO05D005080 3.1e-159 566.6 776 54.5
SEGI_05010 Sequoiadendron giganteum HOM05D003747 ORTHO05D005080 1.2e-150 538.1 813 48.2
MBI16_g07670_MAGBIO Magnolia biondii HOM05D003747 ORTHO05D005080 1.3e-149 534.6 780 52.4
Rhsim06G0026300 Rhododendron simsii HOM05D003747 ORTHO05D005080 3.9e-146 523.1 773 51.0
Hma1.2p1_1386F.1_g279810 Hydrangea macrophylla HOM05D003747 ORTHO05D005080 1.3e-144 518.1 773 49.7
TAR376G0166 Trochodendron aralioides HOM05D003747 ORTHO05D005080 2.2e-144 517.3 774 49.6
Oeu047748.1 Olea europaea HOM05D003747 ORTHO05D005080 2.4e-143 513.8 777 50.1
HanXRQChr09g0269391 Helianthus annuus HOM05D003747 ORTHO05D005080 1.5e-142 511.1 786 45.0
MBI05_g04846_MAGBIO Magnolia biondii HOM05D003747 ORTHO05D005080 1.0e-141 508.4 780 49.4
PSO541G0570 Papaver somniferum HOM05D003747 ORTHO05D005080 1.0e-141 508.4 780 48.1
Dinv39487 Davidia involucrata HOM05D003747 ORTHO05D005080 1.3e-141 508.1 781 49.8
PSO675G4036 Papaver somniferum HOM05D003747 ORTHO05D005080 4.2e-140 503.1 787 47.8
Hma1.2p1_0773F.1_g216160 Hydrangea macrophylla HOM05D003747 ORTHO05D005080 7.2e-140 502.3 775 48.8
Zm00001eb398060 Zea mays HOM05D003747 ORTHO05D005080 1.6e-139 501.1 810 48.6
MELO3C024651.2 Cucumis melo HOM05D003747 ORTHO05D005080 7.9e-139 498.8 774 50.0
CSS0029452 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 3.0e-138 496.9 774 47.2
Ah.05g171920 Amaranthus hybridus HOM05D003747 ORTHO05D005080 1.5e-137 494.6 785 49.4
EL10Ac1g00554 Beta vulgaris HOM05D003747 ORTHO05D005080 1.5e-137 494.6 779 49.2
ClCG05G018570 Citrullus lanatus HOM05D003747 ORTHO05D005080 1.5e-137 494.6 774 49.9
MSTRG.25220 Avicennia marina HOM05D003747 ORTHO05D005080 7.4e-137 492.3 777 49.0
VMungo0720G2667 Vigna mungo HOM05D003747 ORTHO05D005080 1.7e-136 491.1 775 49.3
Zm00001eb011630 Zea mays HOM05D003747 ORTHO05D005080 1.7e-136 491.1 799 47.9
Lsat_1_v5_gn_4_116240 Lactuca sativa HOM05D003747 ORTHO05D005080 3.7e-136 490.0 757 49.5
Aa31LG1G19600 Aethionema arabicum HOM05D003747 ORTHO05D005080 4.8e-136 489.6 769 49.3
Manes.05G152300 Manihot esculenta HOM05D003747 ORTHO05D005080 6.3e-136 489.2 774 49.1
Ciclev10000324m.g Citrus clementina HOM05D003747 ORTHO05D005080 8.2e-136 488.8 773 49.2
Oeu046245.1 Olea europaea HOM05D003747 ORTHO05D005080 1.8e-135 487.6 780 45.8
Carub.0004s1380 Capsella rubella HOM05D003747 ORTHO05D005080 2.4e-135 487.3 778 48.8
AT2G32450 Arabidopsis thaliana HOM05D003747 ORTHO05D005080 3.1e-135 486.9 772 49.2
Thhalv10017699m.g Eutrema salsugineum HOM05D003747 ORTHO05D005080 3.1e-135 486.9 769 49.8
Oeu046243.1 Olea europaea HOM05D003747 ORTHO05D005080 3.1e-135 486.9 780 45.8
Psat0s1558g0040 Pisum sativum HOM05D003747 ORTHO05D005080 4.1e-135 486.5 776 49.1
Glyma.10G132800 Glycine max HOM05D003747 ORTHO05D005080 5.3e-135 486.1 777 49.0
Peaxi162Scf00287g00127 Petunia axillaris HOM05D003747 ORTHO05D005080 6.9e-135 485.7 773 50.1
Potri.005G234900 Populus trichocarpa HOM05D003747 ORTHO05D005080 6.9e-135 485.7 778 49.5
Sc02g0005230 Simmondsia chinensis HOM05D003747 ORTHO05D005080 6.9e-135 485.7 785 46.5
CiPaw.07G154200 Carya illinoinensis HOM05D003747 ORTHO05D005080 9.1e-135 485.3 773 49.0
DCAR_022445 Daucus carota HOM05D003747 ORTHO05D005080 9.1e-135 485.3 783 49.2
Medtr1g045490 Medicago truncatula HOM05D003747 ORTHO05D005080 9.1e-135 485.3 775 49.0
Potri.002G027900 Populus trichocarpa HOM05D003747 ORTHO05D005080 9.1e-135 485.3 778 48.7
RcHm_v2.0_Chr6g0302151 Rosa chinensis HOM05D003747 ORTHO05D005080 1.5e-134 484.6 778 48.2
Thecc.08G037800 Theobroma cacao HOM05D003747 ORTHO05D005080 1.5e-134 484.6 774 49.7
Atru.chr13.357 Acer truncatum HOM05D003747 ORTHO05D005080 2.0e-134 484.2 776 48.8
Manes.18G017800 Manihot esculenta HOM05D003747 ORTHO05D005080 2.6e-134 483.8 774 49.9
Lalb_Chr19g0128511 Lupinus albus HOM05D003747 ORTHO05D005080 3.4e-134 483.4 772 48.6
COL.COLO4_26196 Corchorus olitorius HOM05D003747 ORTHO05D005080 5.9e-134 482.6 773 48.6
Sopen04g034670 Solanum pennellii HOM05D003747 ORTHO05D005080 5.9e-134 482.6 773 49.8
Sp4g14820 Schrenkiella parvula HOM05D003747 ORTHO05D005080 7.7e-134 482.3 769 49.3
TWI56G0727 Tripterygium wilfordii HOM05D003747 ORTHO05D005080 7.7e-134 482.3 772 49.6
CANSAT25G1149 Cannabis sativa HOM05D003747 ORTHO05D005080 1.0e-133 481.9 774 48.7
Phvul.007G231400 Phaseolus vulgaris HOM05D003747 ORTHO05D005080 1.0e-133 481.9 775 48.8
Solyc04g081050.2 Solanum lycopersicum HOM05D003747 ORTHO05D005080 1.0e-133 481.9 773 49.7
CAN.G851.8 Capsicum annuum HOM05D003747 ORTHO05D005080 1.3e-133 481.5 773 49.5
THA.LOC104806907 Tarenaya hassleriana HOM05D003747 ORTHO05D005080 1.3e-133 481.5 769 48.5
Nitab4.5_0012730g0020 Nicotiana tabacum HOM05D003747 ORTHO05D005080 2.2e-133 480.7 775 49.7
ATR0620G056 Amborella trichopoda HOM05D003747 ORTHO05D005080 2.9e-133 480.3 774 48.3
FvH4_2g39050 Fragaria vesca HOM05D003747 ORTHO05D005080 2.9e-133 480.3 775 48.9
Sabra02G0022000 Salix brachista HOM05D003747 ORTHO05D005080 2.9e-133 480.3 777 48.5
arahy.Tifrunner.gnm1.ann1.K8KKRC Arachis hypogaea HOM05D003747 ORTHO05D005080 3.8e-133 479.9 781 48.7
arahy.Tifrunner.gnm1.ann1.VC055M Arachis hypogaea HOM05D003747 ORTHO05D005080 3.8e-133 479.9 781 48.5
Lj4C29T2 Lonicera japonica HOM05D003747 ORTHO05D005080 3.8e-133 479.9 774 49.1
AL4G27840 Arabidopsis lyrata HOM05D003747 ORTHO05D005080 5.0e-133 479.6 780 48.3
Glyma.20G084100 Glycine max HOM05D003747 ORTHO05D005080 1.1e-132 478.4 777 49.0
Sed0022188 Sechium edule HOM05D003747 ORTHO05D005080 1.4e-132 478.0 780 49.1
Duzib041G0542 Durio zibethinus HOM05D003747 ORTHO05D005080 1.9e-132 477.6 778 48.2
ECA246G3046 Erigeron canadensis HOM05D003747 ORTHO05D005080 1.9e-132 477.6 803 48.2
Lalb_Chr03g0036971 Lupinus albus HOM05D003747 ORTHO05D005080 1.9e-132 477.6 773 48.0
Aa31LG5G4820 Aethionema arabicum HOM05D003747 ORTHO05D005080 3.2e-132 476.9 771 49.0
SMO118G0420 Selaginella moellendorffii HOM05D003747 ORTHO05D005080 3.2e-132 476.9 798 46.7
FAN15G1267 Fragaria x ananassa HOM05D003747 ORTHO05D005080 9.4e-132 475.3 775 48.5
Os03g0263900 Oryza sativa ssp. japonica HOM05D003747 ORTHO05D005080 1.2e-131 474.9 809 47.2
CARHR126280 Cardamine hirsuta HOM05D003747 ORTHO05D005080 1.6e-131 474.6 780 48.3
PGR083G0723 Punica granatum HOM05D003747 ORTHO05D005080 1.6e-131 474.6 786 48.9
Ca_11895_v3 Cicer arietinum L. HOM05D003747 ORTHO05D005080 2.1e-131 474.2 777 48.8
Ca_30287_v3 Cicer arietinum L. HOM05D003747 ORTHO05D005080 2.1e-131 474.2 777 48.8
Gorai.009G196800 Gossypium raimondii HOM05D003747 ORTHO05D005080 2.7e-131 473.8 778 48.7
TPR.G16935 Trifolium pratense HOM05D003747 ORTHO05D005080 2.7e-131 473.8 779 48.5
Aqoxy6G02380 Aquilegia oxysepala HOM05D003747 ORTHO05D005080 3.6e-131 473.4 783 47.4
FAN27G0346 Fragaria x ananassa HOM05D003747 ORTHO05D005080 3.6e-131 473.4 775 48.4
Gohir.D05G191500 Gossypium hirsutum HOM05D003747 ORTHO05D005080 3.6e-131 473.4 778 48.7
Sabra05G0181100 Salix brachista HOM05D003747 ORTHO05D005080 4.7e-131 473.0 778 48.1
Cc10_g02100 Coffea canephora HOM05D003747 ORTHO05D005080 6.1e-131 472.6 774 48.8
TWI12G0622 Tripterygium wilfordii HOM05D003747 ORTHO05D005080 6.1e-131 472.6 772 49.5
Gohir.A05G188400 Gossypium hirsutum HOM05D003747 ORTHO05D005080 7.9e-131 472.2 778 49.2
Gorai.002G125100 Gossypium raimondii HOM05D003747 ORTHO05D005080 1.0e-130 471.9 778 47.7
Peaxi162Scf00640g00034 Petunia axillaris HOM05D003747 ORTHO05D005080 1.0e-130 471.9 776 49.1
AUR62014428 Chenopodium quinoa HOM05D003747 ORTHO05D005080 1.4e-130 471.5 777 48.3
MD08G1018000 Malus domestica HOM05D003747 ORTHO05D005080 1.4e-130 471.5 774 48.2
SGA_v2.0_scaffold326G48749 Striga asiatica HOM05D003747 ORTHO05D005080 1.4e-130 471.5 790 48.0
AL1G14910 Arabidopsis lyrata HOM05D003747 ORTHO05D005080 1.8e-130 471.1 780 48.3
Migut.N03134 Erythranthe guttata HOM05D003747 ORTHO05D005080 1.8e-130 471.1 778 48.6
Eucgr.F01620 Eucalyptus grandis HOM05D003747 ORTHO05D005080 1.8e-130 471.1 783 48.4
FAN20G0205 Fragaria x ananassa HOM05D003747 ORTHO05D005080 2.3e-130 470.7 775 48.4
MD15G1017300 Malus domestica HOM05D003747 ORTHO05D005080 2.3e-130 470.7 775 48.8
Lj6g0007889 Lotus japonicus HOM05D003747 ORTHO05D005080 3.9e-130 469.9 778 47.2
Prupe.1G370600 Prunus persica HOM05D003747 ORTHO05D005080 3.9e-130 469.9 774 48.4
Haze_22585 Corylus avellana HOM05D003747 ORTHO05D005080 6.7e-130 469.2 772 47.9
Actinidia15389 Actinidia chinensis HOM05D003747 ORTHO05D005080 8.8e-130 468.8 737 50.1
CARHR004600 Cardamine hirsuta HOM05D003747 ORTHO05D005080 1.1e-129 468.4 782 48.1
Carub.0001s0442 Capsella rubella HOM05D003747 ORTHO05D005080 2.0e-129 467.6 782 48.3
Gohir.D01G100800 Gossypium hirsutum HOM05D003747 ORTHO05D005080 2.0e-129 467.6 778 47.7
Nitab4.5_0000352g0010 Nicotiana tabacum HOM05D003747 ORTHO05D005080 2.6e-129 467.2 779 49.0
QL02p010745 Quercus lobata HOM05D003747 ORTHO05D005080 4.4e-129 466.5 773 48.4
CSS0007586 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 5.7e-129 466.1 750 46.7
CiPaw.08G062900 Carya illinoinensis HOM05D003747 ORTHO05D005080 5.7e-129 466.1 774 48.3
A10p03680 Brassica napus HOM05D003747 ORTHO05D005080 9.7e-129 465.3 777 48.6
BraA10t42641Z Brassica rapa HOM05D003747 ORTHO05D005080 9.7e-129 465.3 777 48.6
Nitab4.5_0004368g0010 Nicotiana tabacum HOM05D003747 ORTHO05D005080 9.7e-129 465.3 776 49.2
Sp1g04000 Schrenkiella parvula HOM05D003747 ORTHO05D005080 1.3e-128 464.9 778 48.5
SpUn0024_0140 Schrenkiella parvula HOM05D003747 ORTHO05D005080 1.3e-128 464.9 778 48.5
Duzib116G0012 Durio zibethinus HOM05D003747 ORTHO05D005080 2.8e-128 463.8 784 47.3
HPP92_006843 Vanilla planifolia HOM05D003747 ORTHO05D005080 2.8e-128 463.8 763 47.3
AT1G05150 Arabidopsis thaliana HOM05D003747 ORTHO05D005080 6.3e-128 462.6 782 47.8
AUR62034569 Chenopodium quinoa HOM05D003747 ORTHO05D005080 6.3e-128 462.6 777 47.5
C05p03390 Brassica napus HOM05D003747 ORTHO05D005080 8.2e-128 462.2 781 48.1
BolC5t29116H Brassica oleracea HOM05D003747 ORTHO05D005080 8.2e-128 462.2 781 48.1
Cfa013905 Carpinus fangiana HOM05D003747 ORTHO05D005080 1.8e-127 461.1 772 47.5
MSTRG.24265 Avicennia marina HOM05D003747 ORTHO05D005080 5.3e-127 459.5 783 47.1
TAR628G0607 Trochodendron aralioides HOM05D003747 ORTHO05D005080 7.7e-126 455.7 774 47.7
PGSC0003DMG400003764 Solanum tuberosum HOM05D003747 ORTHO05D005080 2.9e-125 453.8 821 45.8
HanXRQChr05g0156281 Helianthus annuus HOM05D003747 ORTHO05D005080 3.8e-125 453.4 796 45.7
Aqoxy5G01483 Aquilegia oxysepala HOM05D003747 ORTHO05D005080 4.2e-124 449.9 780 46.2
Lsat_1_v5_gn_5_26081 Lactuca sativa HOM05D003747 ORTHO05D005080 5.5e-124 449.5 790 47.3
Cpa.g.sc140.21 Carica papaya HOM05D003747 ORTHO05D005080 4.7e-123 446.4 749 48.2
Nn5g29219 Nelumbo nucifera HOM05D003747 ORTHO05D005080 1.8e-122 444.5 773 47.2
SHI08097 Sapria himalayana HOM05D003747 ORTHO05D005080 3.9e-122 443.4 777 46.1
Gohir.A01G113100 Gossypium hirsutum HOM05D003747 ORTHO05D005080 9.7e-121 438.7 753 47.5
Pp3c1_8310 Physcomitrium patens HOM05D003747 ORTHO05D005080 5.9e-118 429.5 796 44.5
AagrBONN_evm.TU.Sc2ySwM_228.5529 Anthoceros agrestis HOM05D003747 ORTHO05D005080 1.1e-116 425.2 771 42.3
BcaNung05933 Brassica carinata HOM05D003747 ORTHO05D005080 1.9e-116 424.5 781 42.8
Dinv31811 Davidia involucrata HOM05D003747 ORTHO05D005080 3.2e-116 423.7 776 47.0
ECA232G3638 Erigeron canadensis HOM05D003747 ORTHO05D005080 1.0e-114 418.7 740 45.3
Nn6g32245 Nelumbo nucifera HOM05D003747 ORTHO05D005080 5.2e-114 416.4 711 48.2
Pp3c2_26690 Physcomitrium patens HOM05D003747 ORTHO05D005080 6.3e-112 409.5 823 43.4
GSVIVG01009826001 Vitis vinifera HOM05D003747 ORTHO05D005080 2.7e-110 404.1 710 48.7
CDE05G0031 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 4.2e-108 396.7 668 49.1
Mapoly0016s0016 Marchantia polymorpha HOM05D003747 ORTHO05D005080 1.6e-107 394.8 807 40.3
unitig_899.g15539 Utricularia gibba HOM05D003747 ORTHO05D005080 2.1e-107 394.4 706 48.2
CSS0038687 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 8.0e-107 392.5 771 44.7
SMO331G0035 Selaginella moellendorffii HOM05D003747 ORTHO05D005080 8.3e-104 382.5 783 42.4
Cc10_g07350 Coffea canephora HOM05D003747 ORTHO05D005080 2.0e-102 377.9 806 43.2
CDE10G1342 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 3.9e-85 320.5 803 30.6
unitig_746.g26813 Utricularia gibba HOM05D003747 ORTHO05D005080 6.6e-85 319.7 650 46.9
CBR_g21825 Chara braunii HOM05D003747 ORTHO05D005080 1.6e-83 315.1 859 36.9
CsaV3_1G045460 Cucumis sativus L. HOM05D003747 ORTHO05D005080 1.3e-72 278.9 344 46.5
HPP92_027213 Vanilla planifolia HOM05D003747 ORTHO05D005080 2.4e-71 274.6 380 43.4
FAN14G4182 Fragaria x ananassa HOM05D003747 ORTHO05D005080 5.6e-68 263.5 343 43.7
CsaV3_UNG233280 Cucumis sativus L. HOM05D003747 ORTHO05D005080 3.3e-60 237.7 330 43.3
CsaV3_1G045450 Cucumis sativus L. HOM05D003747 ORTHO05D005080 4.3e-60 237.3 305 44.9
CsaV3_UNG233290 Cucumis sativus L. HOM05D003747 ORTHO05D005080 4.3e-60 237.3 305 44.9
Rhsim06G0014300 Rhododendron simsii HOM05D003747 ORTHO05D000001 1.6e-51 208.8 363 40.2
HPP92_027212 Vanilla planifolia HOM05D003747 ORTHO05D051588 2.1e-30 138.7 195 41.5
BolC8t46977H Brassica oleracea HOM05D003747 ORTHO05D016772 2.8e-27 128.3 185 40.5
FAN03G1393 Fragaria x ananassa HOM05D003747 ORTHO05D005080 2.8e-27 128.3 155 47.7
FAN20G0559 Fragaria x ananassa HOM05D003747 ORTHO05D005080 6.3e-27 127.1 155 47.7
FAN05G3899 Fragaria x ananassa HOM05D003747 ORTHO05D005080 1.4e-26 125.9 164 44.5
FAN12G1591 Fragaria x ananassa HOM05D003747 ORTHO05D005080 4.1e-26 124.4 163 45.4
C08p01770 Brassica napus HOM05D003747 ORTHO05D016772 7.7e-25 120.2 186 40.3
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 8.5e-24 116.7 105 57.1
HanXRQChr13g0424291 Helianthus annuus HOM05D003747 ORTHO05D005080 1.9e-23 115.5 112 51.8
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 5.5e-23 114.0 105 56.2
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.7e-22 111.7 148 46.6
Zm00001eb159690 Zea mays HOM05D003747 ORTHO05D051588 4.6e-22 110.9 176 41.5
Lj3A743G72 Lonicera japonica HOM05D000041 ORTHO05D000452 2.9e-16 91.7 91 52.7
Lj3A744G93 Lonicera japonica HOM05D000041 ORTHO05D000452 5.0e-16 90.9 91 49.5
Pp3c1_6530 Physcomitrium patens HOM05D003747 ORTHO05D005080 1.9e-15 89.0 91 49.5
Rhsim06G0013900 Rhododendron simsii HOM05D003747 ORTHO05D005080 2.1e-14 85.5 233 29.2
Rhsim06G0014800 Rhododendron simsii HOM05D003747 ORTHO05D005080 7.9e-14 83.6 235 29.4
Lsat_1_v5_gn_4_36661 Lactuca sativa HOM05D003747 ORTHO05D005080 1.0e-13 83.2 113 43.4
unitig_746.g26812 Utricularia gibba HOM05D003747 ORTHO05D016772 1.8e-13 82.4 81 46.9
Lsat_1_v5_gn_8_75581 Lactuca sativa HOM05D000041 ORTHO05D000452 5.7e-12 77.4 81 46.9
HPP92_027211 Vanilla planifolia HOM05D003747 ORTHO05D016772 8.2e-11 73.6 70 45.7
Lj3A744G94 Lonicera japonica HOM05D000041 ORTHO05D004955 4.1e-10 71.2 72 48.6
Cpa.g.sc99.31 Carica papaya HOM05D003747 ORTHO05D005080 7.0e-10 70.5 90 40.0
TAR628G1670 Trochodendron aralioides HOM05D003747 ORTHO05D016772 1.6e-09 69.3 51 68.6
Lj3A751T54 Lonicera japonica HOM05D000041 ORTHO05D000452 2.6e-09 68.6 103 34.0
Nn5g30522 Nelumbo nucifera HOM05D003747 ORTHO05D005080 5.9e-09 67.4 81 51.9
BcaC07g36860 Brassica carinata HOM05D003747 ORTHO05D016772 1.9e-07 62.4 61 45.9
unitig_899.g15538 Utricularia gibba HOM05D003747 ORTHO05D016772 1.9e-07 62.4 61 49.2
Zm00001eb026790 Zea mays HOM05D003747 ORTHO05D029724 2.5e-07 62.0 162 73.5
HanXRQChr14g0454921 Helianthus annuus HOM05D000041 ORTHO05D000452 4.2e-07 61.2 96 37.5
HanXRQChr17g0545051 Helianthus annuus HOM05D000041 ORTHO05D000452 4.2e-07 61.2 96 37.5
Zm00001eb159680 Zea mays HOM05D003747 ORTHO05D029724 4.2e-07 61.2 36 75.0
Lj3A751T55 Lonicera japonica HOM05D000041 ORTHO05D000452 9.4e-07 60.1 105 32.4
BcaC07g36859 Brassica carinata HOM05D003747 ORTHO05D016772 2.1e-06 58.9 62 53.2


User provided reference genes

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