Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G1484 Ceratophyllum demersum HOM05D004028 ORTHO05D004844 3.5e-258 894.4 441 100.0
CDE01G0290 Ceratophyllum demersum HOM05D004028 ORTHO05D004844 1.4e-171 606.7 389 78.7
TAR636G0621 Trochodendron aralioides HOM05D004028 ORTHO05D004844 7.3e-99 365.2 385 47.5
Sopen03g038800 Solanum pennellii HOM05D004028 ORTHO05D004844 6.8e-97 358.6 398 47.5
Solyc03g119920.1 Solanum lycopersicum HOM05D004028 ORTHO05D004844 1.5e-96 357.5 398 47.0
Nn8g39324 Nelumbo nucifera HOM05D004028 ORTHO05D004844 5.8e-96 355.5 389 47.0
CiPaw.01G242300 Carya illinoinensis HOM05D004028 ORTHO05D004844 4.9e-95 352.4 406 45.3
PGSC0003DMG400005615 Solanum tuberosum HOM05D004028 ORTHO05D004844 6.4e-95 352.1 398 46.5
Lj5C65T7 Lonicera japonica HOM05D004028 ORTHO05D004844 2.7e-93 346.7 386 46.6
Nitab4.5_0000410g0330 Nicotiana tabacum HOM05D004028 ORTHO05D004844 4.6e-93 345.9 397 46.3
CSS0044472 Camellia sinensis var. sinensis HOM05D004028 ORTHO05D004844 1.0e-92 344.7 385 46.2
Peaxi162Scf00015g00059 Petunia axillaris HOM05D004028 ORTHO05D004844 1.0e-92 344.7 402 46.0
Nitab4.5_0003751g0020 Nicotiana tabacum HOM05D004028 ORTHO05D004844 1.3e-92 344.4 398 46.2
Dinv30549 Davidia involucrata HOM05D004028 ORTHO05D004844 1.5e-91 340.9 392 44.6
QL05p026783 Quercus lobata HOM05D004028 ORTHO05D004844 9.6e-91 338.2 386 45.6
Aqoxy7G01945 Aquilegia oxysepala HOM05D004028 ORTHO05D004844 2.1e-90 337.0 393 42.7
MD17G1201100 Malus domestica HOM05D004028 ORTHO05D004844 2.1e-90 337.0 390 44.9
SalBow2G1023 Salvia bowleyana HOM05D004028 ORTHO05D004844 2.8e-90 336.7 388 44.6
CAN.G438.98 Capsicum annuum HOM05D004028 ORTHO05D004844 1.1e-89 334.7 397 44.8
Rhsim08G0217900 Rhododendron simsii HOM05D000103 ORTHO05D000049 2.4e-89 333.6 390 46.4
MSTRG.11103 Avicennia marina HOM05D004028 ORTHO05D004844 4.0e-89 332.8 394 43.9
Cfa002035 Carpinus fangiana HOM05D004028 ORTHO05D004844 5.2e-89 332.4 390 44.4
CANSAT56G0144 Cannabis sativa HOM05D004028 ORTHO05D004844 8.9e-89 331.6 411 44.5
PSO017G1888 Papaver somniferum HOM05D004028 ORTHO05D004844 1.5e-88 330.9 391 43.7
PSO170G5200 Papaver somniferum HOM05D004028 ORTHO05D004844 2.0e-88 330.5 391 44.0
Haze_16483 Corylus avellana HOM05D004028 ORTHO05D004844 3.4e-88 329.7 390 44.1
MBI04_g43145_MAGBIO Magnolia biondii HOM05D004028 ORTHO05D004844 4.4e-88 329.3 396 44.9
Oeu001148.1 Olea europaea HOM05D004028 ORTHO05D004844 4.4e-88 329.3 391 45.5
Gohir.A10G078100 Gossypium hirsutum HOM05D004028 ORTHO05D004844 7.6e-88 328.6 391 43.7
Gorai.011G079300 Gossypium raimondii HOM05D004028 ORTHO05D004844 2.2e-87 327.0 391 43.7
vmacro18947 Vaccinium macrocarpon HOM05D004028 ORTHO05D004844 6.4e-87 325.5 392 45.7
Gohir.D10G073400 Gossypium hirsutum HOM05D004028 ORTHO05D004844 1.1e-86 324.7 391 43.5
Duzib235G0948 Durio zibethinus HOM05D004028 ORTHO05D004844 1.4e-86 324.3 389 43.4
Sed0005418 Sechium edule HOM05D004028 ORTHO05D004844 1.4e-86 324.3 383 43.1
TWI12G0252 Tripterygium wilfordii HOM05D004028 ORTHO05D004844 4.2e-86 322.8 390 44.1
Prupe.3G076900 Prunus persica HOM05D004028 ORTHO05D004844 2.1e-85 320.5 387 42.6
Thecc.06G077900 Theobroma cacao HOM05D004028 ORTHO05D004844 2.1e-85 320.5 389 43.4
COL.COLO4_12855 Corchorus olitorius HOM05D004028 ORTHO05D004844 2.7e-85 320.1 389 44.0
Psat4g172640 Pisum sativum HOM05D004028 ORTHO05D004844 6.0e-85 318.9 389 41.4
Atru.chr1.3171 Acer truncatum HOM05D004028 ORTHO05D004844 7.8e-85 318.5 388 42.8
ATR0083G044 Amborella trichopoda HOM05D004028 ORTHO05D004844 1.3e-84 317.8 385 43.1
Medtr4g011610 Medicago truncatula HOM05D004028 ORTHO05D004844 1.3e-84 317.8 392 42.3
Lj3g0027440 Lotus japonicus HOM05D004028 ORTHO05D004844 1.7e-84 317.4 388 41.2
ECA247G3140 Erigeron canadensis HOM05D004028 ORTHO05D004844 4.3e-83 312.8 348 44.5
RcHm_v2.0_Chr2g0137111 Rosa chinensis HOM05D004028 ORTHO05D004844 5.6e-83 312.4 390 42.3
HPP92_021805 Vanilla planifolia HOM05D004028 ORTHO05D004844 2.1e-82 310.5 395 43.5
Glyma.07G033400 Glycine max HOM05D004028 ORTHO05D004844 2.8e-82 310.1 385 43.1
Ciclev10024778m.g Citrus clementina HOM05D004028 ORTHO05D004844 3.6e-82 309.7 389 41.1
ClCG09G002500 Citrullus lanatus HOM05D004028 ORTHO05D004844 8.1e-82 308.5 397 41.6
MELO3C023384.2 Cucumis melo HOM05D004028 ORTHO05D004844 1.1e-81 308.1 394 41.6
Dinv38074 Davidia involucrata HOM05D004028 ORTHO05D004844 1.8e-81 307.4 382 44.8
FAN09G1065 Fragaria x ananassa HOM05D004028 ORTHO05D004844 2.4e-81 307.0 391 41.9
Potri.001G175600 Populus trichocarpa HOM05D004028 ORTHO05D004844 2.4e-81 307.0 394 43.1
VMungo0331G0808 Vigna mungo HOM05D004028 ORTHO05D004844 3.1e-81 306.6 388 40.7
CsaV3_7G032830 Cucumis sativus L. HOM05D004028 ORTHO05D004844 4.0e-81 306.2 397 41.1
AT1G52780 Arabidopsis thaliana HOM05D004028 ORTHO05D004844 5.3e-81 305.8 384 43.2
Glyma.08G208600 Glycine max HOM05D004028 ORTHO05D004844 6.9e-81 305.4 391 41.4
PGR004G0126 Punica granatum HOM05D004028 ORTHO05D004844 9.0e-81 305.1 403 41.9
CARHR042960 Cardamine hirsuta HOM05D004028 ORTHO05D004844 1.2e-80 304.7 383 42.0
Phvul.010G152600 Phaseolus vulgaris HOM05D004028 ORTHO05D004844 1.2e-80 304.7 388 41.2
arahy.Tifrunner.gnm1.ann1.09PUMV Arachis hypogaea HOM05D004028 ORTHO05D004844 2.0e-80 303.9 387 40.3
Lalb_Chr04g0262561 Lupinus albus HOM05D004028 ORTHO05D004844 2.6e-80 303.5 402 42.0
Ca_07170_v3 Cicer arietinum L. HOM05D004028 ORTHO05D004844 4.4e-80 302.8 410 40.0
Sabra01G0136900 Salix brachista HOM05D004028 ORTHO05D004844 4.4e-80 302.8 394 41.6
FAN02G4155 Fragaria x ananassa HOM05D004028 ORTHO05D004844 5.8e-80 302.4 391 41.2
Carub.0001s4187 Capsella rubella HOM05D004028 ORTHO05D004844 7.6e-80 302.0 384 41.7
FAN05G3865 Fragaria x ananassa HOM05D004028 ORTHO05D004844 7.6e-80 302.0 391 41.7
Sp1g39350 Schrenkiella parvula HOM05D004028 ORTHO05D004844 7.6e-80 302.0 381 42.5
Manes.04G119500 Manihot esculenta HOM05D004028 ORTHO05D004844 1.3e-79 301.2 394 41.9
FvH4_6g30720 Fragaria vesca HOM05D004028 ORTHO05D004844 2.2e-79 300.4 391 40.9
AL1G61100 Arabidopsis lyrata HOM05D004028 ORTHO05D004844 1.9e-78 297.4 383 42.3
Sc12g0009060 Simmondsia chinensis HOM05D004028 ORTHO05D004844 1.9e-78 297.4 392 41.1
HanXRQChr04g0096371 Helianthus annuus HOM05D004028 ORTHO05D004844 1.2e-77 294.7 422 38.9
Oeu001149.3 Olea europaea HOM05D004028 ORTHO05D004844 4.6e-77 292.7 391 42.7
Aa31LG10G2260 Aethionema arabicum HOM05D004028 ORTHO05D004844 6.6e-76 288.9 396 40.2
Thhalv10011203m.g Eutrema salsugineum HOM05D004028 ORTHO05D004844 3.3e-75 286.6 381 40.9
FAN14G3012 Fragaria x ananassa HOM05D004028 ORTHO05D004844 2.1e-74 283.9 355 41.4
Ah.01g021130 Amaranthus hybridus HOM05D004028 ORTHO05D004844 3.6e-74 283.1 398 38.9
Migut.I00818 Erythranthe guttata HOM05D004028 ORTHO05D004844 1.1e-73 281.6 390 42.3
Os01g0176800 Oryza sativa ssp. japonica HOM05D004028 ORTHO05D004844 4.0e-73 279.6 399 38.8
GSVIVG01017205001 Vitis vinifera HOM05D004028 ORTHO05D004844 9.0e-73 278.5 389 39.6
Zm00001eb122530 Zea mays HOM05D004028 ORTHO05D004844 1.5e-72 277.7 427 36.8
Ciclev10010489m.g Citrus clementina HOM05D004028 ORTHO05D004844 2.0e-72 277.3 392 38.8
A06p01590 Brassica napus HOM05D004028 ORTHO05D004844 2.6e-72 276.9 380 41.3
BraA06t23378Z Brassica rapa HOM05D004028 ORTHO05D004844 2.6e-72 276.9 380 41.3
BcaC08g43459 Brassica carinata HOM05D004028 ORTHO05D004844 5.8e-72 275.8 380 40.5
C06p08330 Brassica napus HOM05D004028 ORTHO05D004844 5.8e-72 275.8 380 40.5
DCAR_016247 Daucus carota HOM05D004028 ORTHO05D004844 2.2e-71 273.9 391 39.6
Dinv30550 Davidia involucrata HOM05D002286 ORTHO05D004844 8.4e-71 271.9 390 41.0
Sed0020445 Sechium edule HOM05D004028 ORTHO05D004844 8.4e-71 271.9 398 37.7
SEGI_27452 Sequoiadendron giganteum HOM05D004028 ORTHO05D004844 1.4e-70 271.2 386 39.6
SEGI_28548 Sequoiadendron giganteum HOM05D004028 ORTHO05D004844 1.4e-70 271.2 386 39.6
AUR62011595 Chenopodium quinoa HOM05D004028 ORTHO05D004844 1.2e-69 268.1 396 37.1
Lj5C65T8 Lonicera japonica HOM05D004028 ORTHO05D004844 2.1e-69 267.3 389 39.1
Actinidia01778 Actinidia chinensis HOM05D000001 ORTHO05D009667 2.3e-68 263.8 313 44.7
Migut.I00822 Erythranthe guttata HOM05D004028 ORTHO05D004844 3.9e-68 263.1 397 41.3
EL10Ac9g21967 Beta vulgaris HOM05D004028 ORTHO05D004844 8.7e-68 261.9 394 36.3
Migut.I00821 Erythranthe guttata HOM05D004028 ORTHO05D004844 9.6e-67 258.5 402 40.0
BcaB07g33394 Brassica carinata HOM05D004028 ORTHO05D004844 4.8e-66 256.1 386 39.4
AUR62016410 Chenopodium quinoa HOM05D004028 ORTHO05D004844 5.3e-65 252.7 360 37.2
AUR62016304 Chenopodium quinoa HOM05D004028 ORTHO05D004844 7.6e-64 248.8 373 36.2
Peaxi162Scf00034g00112 Petunia axillaris HOM05D004028 ORTHO05D004844 1.0e-63 248.4 384 39.1
DCAR_021324 Daucus carota HOM05D004028 ORTHO05D004844 5.5e-62 242.7 386 38.1
Cc09_g08350 Coffea canephora HOM05D004028 ORTHO05D004844 1.2e-61 241.5 401 36.9
Lsat_1_v5_gn_1_33841 Lactuca sativa HOM05D004028 ORTHO05D004844 2.7e-61 240.4 383 37.1
TPR.G38588 Trifolium pratense HOM05D004028 ORTHO05D004844 1.3e-60 238.0 248 46.4
Sc05g0000340 Simmondsia chinensis HOM05D004028 ORTHO05D004844 2.5e-59 233.8 410 34.4
Cpa.g.sc10.197 Carica papaya HOM05D004028 ORTHO05D004844 3.3e-59 233.4 283 42.8
Hma1.2p1_0018F.1_g013000 Hydrangea macrophylla HOM05D004028 ORTHO05D004844 5.7e-59 232.6 396 36.4
Potri.006G187000 Populus trichocarpa HOM05D004028 ORTHO05D004844 1.1e-54 218.4 388 36.3
COL.COLO4_34966 Corchorus olitorius HOM05D004028 ORTHO05D004844 1.3e-52 211.5 414 33.6
Glyma.06G212100 Glycine max HOM05D004028 ORTHO05D004844 6.7e-52 209.1 398 35.2
Phvul.009G199800 Phaseolus vulgaris HOM05D004028 ORTHO05D004844 3.3e-51 206.8 397 36.0
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 4.3e-51 206.5 388 34.5
COL.COLO4_34968 Corchorus olitorius HOM05D004028 ORTHO05D004844 5.7e-51 206.1 413 33.2
Gorai.001G003000 Gossypium raimondii HOM05D004028 ORTHO05D004844 7.4e-51 205.7 399 33.6
Gohir.D07G003000 Gossypium hirsutum HOM05D004028 ORTHO05D004844 4.8e-50 203.0 399 33.3
Gorai.001G002900 Gossypium raimondii HOM05D004028 ORTHO05D004844 4.8e-50 203.0 392 33.2
TAR636G0233 Trochodendron aralioides HOM05D004028 ORTHO05D004844 6.3e-50 202.6 385 32.7
Gohir.D07G002950 Gossypium hirsutum HOM05D004028 ORTHO05D004844 1.4e-49 201.4 394 33.2
Ciclev10010305m.g Citrus clementina HOM05D004028 ORTHO05D004844 3.1e-49 200.3 363 37.7
AUR62022234 Chenopodium quinoa HOM05D004028 ORTHO05D004844 4.1e-49 199.9 355 33.0
Os07g0580766 Oryza sativa ssp. japonica HOM05D004028 ORTHO05D004844 9.0e-49 198.7 417 32.6
EL10As5g23553 Beta vulgaris HOM05D004028 ORTHO05D004844 3.4e-48 196.8 384 31.0
COL.COLO4_34965 Corchorus olitorius HOM05D004028 ORTHO05D004844 5.9e-48 196.1 415 33.3
arahy.Tifrunner.gnm1.ann1.B5Y4IK Arachis hypogaea HOM05D004028 ORTHO05D004844 1.3e-47 194.9 387 34.1
arahy.Tifrunner.gnm1.ann1.65GG0R Arachis hypogaea HOM05D004028 ORTHO05D004844 2.2e-47 194.1 386 34.2
Ciclev10010748m.g Citrus clementina HOM05D004028 ORTHO05D004844 8.5e-47 192.2 387 31.0
ECA236G2741 Erigeron canadensis HOM05D004028 ORTHO05D004844 1.9e-46 191.0 399 31.8
COL.COLO4_34971 Corchorus olitorius HOM05D004028 ORTHO05D004844 7.2e-46 189.1 393 32.6
Lsat_1_v5_gn_8_94080 Lactuca sativa HOM05D004028 ORTHO05D004844 7.2e-46 189.1 398 31.7
Os07g0580700 Oryza sativa ssp. japonica HOM05D004028 ORTHO05D004844 2.1e-45 187.6 402 32.6
Duzib168G0223 Durio zibethinus HOM05D004028 ORTHO05D004844 7.9e-45 185.7 391 31.5
Gohir.A07G002700 Gossypium hirsutum HOM05D004028 ORTHO05D004844 7.9e-45 185.7 398 31.7
ECA236G0421 Erigeron canadensis HOM05D004028 ORTHO05D004844 1.1e-41 175.3 404 31.4
HanXRQChr14g0455571 Helianthus annuus HOM05D004028 ORTHO05D004844 9.1e-41 172.2 395 31.6
PGSC0003DMG400028640 Solanum tuberosum HOM05D004028 ORTHO05D004844 3.2e-38 163.7 212 42.9
Sopen12g022140 Solanum pennellii HOM05D004028 ORTHO05D004844 2.7e-37 160.6 332 33.7
Solyc12g042960.3 Solanum lycopersicum HOM05D004028 ORTHO05D004844 3.6e-37 160.2 288 36.5
Eucgr.J03026 Eucalyptus grandis HOM05D004028 ORTHO05D004844 8.8e-36 155.6 172 44.2
Mapoly0121s0043 Marchantia polymorpha HOM05D004028 ORTHO05D004844 8.8e-36 155.6 416 29.8
Cc09_g08320 Coffea canephora HOM05D004028 ORTHO05D004844 2.1e-29 134.4 256 34.8
Sc12g0009040 Simmondsia chinensis HOM05D004028 ORTHO05D004844 4.1e-25 120.2 144 37.5
AUR62031947 Chenopodium quinoa HOM05D004028 ORTHO05D004844 4.7e-21 106.7 206 31.1
SMO180G0024 Selaginella moellendorffii HOM05D004028 ORTHO05D004844 1.4e-20 105.1 393 29.3
SMO340G0015 Selaginella moellendorffii HOM05D004028 ORTHO05D004844 1.8e-20 104.8 393 29.3
Dinv36589 Davidia involucrata HOM05D004028 ORTHO05D004844 9.8e-19 99.0 301 24.9
Thecc.09G118100 Theobroma cacao HOM05D004028 ORTHO05D004844 9.8e-19 99.0 276 27.5
TPR.G40708 Trifolium pratense HOM05D004028 ORTHO05D004844 1.4e-17 95.1 153 34.6
MBI04_g43146_MAGBIO Magnolia biondii HOM05D004028 ORTHO05D048445 7.0e-17 92.8 97 49.5
Mapoly0017s0022 Marchantia polymorpha HOM05D004028 ORTHO05D004844 9.1e-17 92.4 161 36.0
Lj8P335T19 Lonicera japonica HOM05D004028 ORTHO05D048445 9.4e-14 82.4 96 43.8
Dinv38073 Davidia involucrata HOM05D004028 ORTHO05D004844 2.8e-10 70.9 39 82.1
TAR636G1811 Trochodendron aralioides HOM05D004028 ORTHO05D004844 3.1e-09 67.4 48 64.6
COL.COLO4_35012 Corchorus olitorius HOM05D004028 ORTHO05D004844 5.4e-09 66.6 151 29.8
Sc14g0002730 Simmondsia chinensis HOM05D004028 ORTHO05D004844 2.7e-08 64.3 79 36.7
SalBow2G1894 Salvia bowleyana HOM05D004028 ORTHO05D004844 2.3e-07 61.2 38 73.7
COL.COLO4_34970 Corchorus olitorius HOM05D004028 ORTHO05D004844 1.5e-06 58.5 84 35.7


User provided reference genes

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