Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G1358 Ceratophyllum demersum HOM05D002496 ORTHO05D002787 1.1e-264 916.0 434 100.0
Nn7g35861 Nelumbo nucifera HOM05D002496 ORTHO05D002787 3.5e-231 804.7 414 90.3
Prupe.6G003300 Prunus persica HOM05D002496 ORTHO05D002787 5.1e-230 800.8 414 89.9
QL01p003675 Quercus lobata HOM05D002496 ORTHO05D002787 5.1e-230 800.8 411 90.8
TAR369G0007 Trochodendron aralioides HOM05D002496 ORTHO05D002787 5.1e-230 800.8 413 91.0
TAR623G0218 Trochodendron aralioides HOM05D002496 ORTHO05D002787 5.1e-230 800.8 414 90.8
DCAR_029934 Daucus carota HOM05D002496 ORTHO05D002787 6.7e-230 800.4 413 90.3
MBI01_g25638_MAGBIO Magnolia biondii HOM05D002496 ORTHO05D002787 8.7e-230 800.0 410 91.5
Dinv13473 Davidia involucrata HOM05D002496 ORTHO05D002787 1.1e-229 799.7 414 90.6
MELO3C015577.2 Cucumis melo HOM05D002496 ORTHO05D002787 4.3e-229 797.7 406 91.4
CiPaw.13G177100 Carya illinoinensis HOM05D002496 ORTHO05D002787 7.4e-229 797.0 414 89.4
Lj2A763G36 Lonicera japonica HOM05D002496 ORTHO05D002787 9.7e-229 796.6 414 89.9
CSS0046180 Camellia sinensis var. sinensis HOM05D002496 ORTHO05D002787 1.3e-228 796.2 413 89.6
CsaV3_1G041650 Cucumis sativus L. HOM05D002496 ORTHO05D002787 1.3e-228 796.2 406 91.1
Manes.03G087600 Manihot esculenta HOM05D002496 ORTHO05D002787 1.3e-228 796.2 414 89.9
Potri.003G221100 Populus trichocarpa HOM05D002496 ORTHO05D002787 1.3e-228 796.2 414 89.6
RcHm_v2.0_Chr5g0083811 Rosa chinensis HOM05D002496 ORTHO05D002787 1.3e-228 796.2 414 89.4
Cpa.g.sc119.40 Carica papaya HOM05D002496 ORTHO05D002787 1.6e-228 795.8 414 89.6
MD11G1003500 Malus domestica HOM05D002496 ORTHO05D002787 1.6e-228 795.8 414 89.6
vmacro12599 Vaccinium macrocarpon HOM05D002496 ORTHO05D002787 1.6e-228 795.8 414 89.6
ClCG03G014540 Citrullus lanatus HOM05D002496 ORTHO05D002787 2.2e-228 795.4 406 91.1
FvH4_3g45741 Fragaria vesca HOM05D002496 ORTHO05D002787 2.2e-228 795.4 410 90.2
FAN25G0679 Fragaria x ananassa HOM05D002496 ORTHO05D002787 2.2e-228 795.4 410 90.2
Hma1.2p1_0241F.1_g100580 Hydrangea macrophylla HOM05D002496 ORTHO05D002787 2.2e-228 795.4 413 90.3
GSVIVG01025470001 Vitis vinifera HOM05D002496 ORTHO05D002787 2.2e-228 795.4 414 88.9
Eucgr.J01766 Eucalyptus grandis HOM05D002496 ORTHO05D002787 2.8e-228 795.0 414 89.9
Duzib168G0200 Durio zibethinus HOM05D002496 ORTHO05D002787 3.7e-228 794.7 413 90.1
Cc01_g00070 Coffea canephora HOM05D002496 ORTHO05D002787 4.8e-228 794.3 414 89.1
ATR0827G153 Amborella trichopoda HOM05D002496 ORTHO05D002787 6.3e-228 793.9 413 89.6
Thecc.09G199700 Theobroma cacao HOM05D002496 ORTHO05D002787 1.1e-227 793.1 413 89.3
Gohir.A03G022300 Gossypium hirsutum HOM05D002496 ORTHO05D002787 1.8e-227 792.3 413 89.8
Gorai.003G153800 Gossypium raimondii HOM05D002496 ORTHO05D002787 1.8e-227 792.3 413 89.6
HanXRQChr13g0405751 Helianthus annuus HOM05D002496 ORTHO05D002787 2.4e-227 792.0 412 89.6
Peaxi162Scf00738g00312 Petunia axillaris HOM05D002496 ORTHO05D002787 2.4e-227 792.0 406 90.4
FAN16G0954 Fragaria x ananassa HOM05D002496 ORTHO05D002787 3.1e-227 791.6 410 90.0
HanXRQChr02g0057261 Helianthus annuus HOM05D002496 ORTHO05D002787 3.1e-227 791.6 411 89.5
PGSC0003DMG400004280 Solanum tuberosum HOM05D002496 ORTHO05D002787 3.1e-227 791.6 414 88.6
Potri.001G003900 Populus trichocarpa HOM05D002496 ORTHO05D002787 4.1e-227 791.2 414 88.9
Sed0022657 Sechium edule HOM05D002496 ORTHO05D002787 4.1e-227 791.2 406 91.1
Rhsim01G0184300 Rhododendron simsii HOM05D002496 ORTHO05D002787 5.3e-227 790.8 414 88.6
PGR119G1355 Punica granatum HOM05D002496 ORTHO05D002787 6.9e-227 790.4 414 88.6
Cfa009562 Carpinus fangiana HOM05D002496 ORTHO05D002787 9.0e-227 790.0 413 89.3
Actinidia39346 Actinidia chinensis HOM05D002496 ORTHO05D002787 1.5e-226 789.3 414 88.9
MD03G1003600 Malus domestica HOM05D002496 ORTHO05D002787 1.5e-226 789.3 414 88.4
Haze_22941 Corylus avellana HOM05D002496 ORTHO05D002787 2.6e-226 788.5 413 89.1
Solyc12g100360.1 Solanum lycopersicum HOM05D002496 ORTHO05D002787 2.6e-226 788.5 414 88.2
SGA_v2.0_scaffold3G01729 Striga asiatica HOM05D002496 ORTHO05D002787 3.4e-226 788.1 412 88.3
Migut.D02566 Erythranthe guttata HOM05D002496 ORTHO05D002787 4.5e-226 787.7 414 87.7
Migut.D02589 Erythranthe guttata HOM05D002496 ORTHO05D002787 4.5e-226 787.7 414 87.7
Nitab4.5_0000827g0130 Nicotiana tabacum HOM05D002496 ORTHO05D002787 4.5e-226 787.7 414 88.4
CANSAT11G2110 Cannabis sativa HOM05D002496 ORTHO05D002787 5.9e-226 787.3 413 88.6
Ciclev10014012m.g Citrus clementina HOM05D002496 ORTHO05D002787 1.0e-225 786.6 414 88.6
Sabra01G0002600 Salix brachista HOM05D002496 ORTHO05D002787 1.0e-225 786.6 419 88.3
Sed0000966 Sechium edule HOM05D002496 ORTHO05D002787 1.0e-225 786.6 406 90.1
Sopen12g035030 Solanum pennellii HOM05D002496 ORTHO05D002787 1.0e-225 786.6 414 88.2
AL1G63400 Arabidopsis lyrata HOM05D002496 ORTHO05D002787 2.9e-225 785.0 413 87.9
SalBow2G0058 Salvia bowleyana HOM05D002496 ORTHO05D002787 2.9e-225 785.0 414 87.7
THA.LOC104810325 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 2.9e-225 785.0 413 88.6
AT1G55350 Arabidopsis thaliana HOM05D002496 ORTHO05D002787 1.4e-224 782.7 413 87.9
BcaC08g43618 Brassica carinata HOM05D002496 ORTHO05D002787 1.9e-224 782.3 413 87.9
Sc16g0012220 Simmondsia chinensis HOM05D002496 ORTHO05D002787 2.5e-224 781.9 414 87.9
Aqoxy1G00475 Aquilegia oxysepala HOM05D002496 ORTHO05D002787 5.5e-224 780.8 404 89.1
Carub.0001s4386 Capsella rubella HOM05D002496 ORTHO05D002787 5.5e-224 780.8 413 87.9
A06p00230 Brassica napus HOM05D002496 ORTHO05D002787 9.4e-224 780.0 413 87.7
C06p10330 Brassica napus HOM05D002496 ORTHO05D002787 9.4e-224 780.0 413 87.7
BraA06t23239Z Brassica rapa HOM05D002496 ORTHO05D002787 9.4e-224 780.0 413 87.7
Lj4g0028195 Lotus japonicus HOM05D002496 ORTHO05D002787 1.6e-223 779.2 414 87.7
BolC6t36109H Brassica oleracea HOM05D002496 ORTHO05D002787 2.1e-223 778.9 413 87.4
Hund21627 Selenicereus undatus HOM05D002496 ORTHO05D002787 4.6e-223 777.7 417 86.6
THA.LOC104822681 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 6.1e-223 777.3 410 88.0
Sp1g41030 Schrenkiella parvula HOM05D002496 ORTHO05D002787 7.9e-223 776.9 413 87.4
MSTRG.20937 Avicennia marina HOM05D002496 ORTHO05D002787 1.0e-222 776.5 414 87.2
Ca_17842_v3 Cicer arietinum L. HOM05D002496 ORTHO05D002787 1.0e-222 776.5 410 87.6
Ca_17843_v3 Cicer arietinum L. HOM05D002496 ORTHO05D002787 1.0e-222 776.5 410 87.6
TPR.G6803 Trifolium pratense HOM05D002496 ORTHO05D002787 1.0e-222 776.5 410 88.3
Medtr8g088520 Medicago truncatula HOM05D002496 ORTHO05D002787 1.4e-222 776.2 410 87.6
Glyma.08G125500 Glycine max HOM05D002496 ORTHO05D002787 1.8e-222 775.8 414 86.7
AUR62019163 Chenopodium quinoa HOM05D002496 ORTHO05D002787 2.3e-222 775.4 412 87.1
AUR62040903 Chenopodium quinoa HOM05D002496 ORTHO05D002787 2.3e-222 775.4 412 87.1
CARHR045010 Cardamine hirsuta HOM05D002496 ORTHO05D002787 3.9e-222 774.6 413 87.4
VMungo0251G1507 Vigna mungo HOM05D002496 ORTHO05D002787 3.9e-222 774.6 409 88.0
Thhalv10011175m.g Eutrema salsugineum HOM05D002496 ORTHO05D002787 8.8e-222 773.5 413 86.9
Sabra03G0164600 Salix brachista HOM05D002496 ORTHO05D002787 8.8e-222 773.5 464 80.2
unitig_899.g15353 Utricularia gibba HOM05D002496 ORTHO05D002787 1.5e-221 772.7 406 87.2
Psat7g063600 Pisum sativum HOM05D002496 ORTHO05D002787 1.9e-221 772.3 410 87.3
BcaB04g16962 Brassica carinata HOM05D002496 ORTHO05D002787 4.3e-221 771.2 413 86.7
Oeu023700.1 Olea europaea HOM05D002496 ORTHO05D002787 5.7e-221 770.8 414 87.2
PSO384G1583 Papaver somniferum HOM05D002496 ORTHO05D002787 5.7e-221 770.8 414 85.7
Oeu023952.2 Olea europaea HOM05D002496 ORTHO05D002787 7.4e-221 770.4 414 87.2
Os02g0709400 Oryza sativa ssp. japonica HOM05D002496 ORTHO05D002787 7.4e-221 770.4 406 88.4
PSO339G0705 Papaver somniferum HOM05D002496 ORTHO05D002787 7.4e-221 770.4 414 85.7
EL10Ac4g10386 Beta vulgaris HOM05D002496 ORTHO05D002787 1.3e-220 769.6 413 86.9
Phvul.002G247600 Phaseolus vulgaris HOM05D002496 ORTHO05D002787 1.3e-220 769.6 409 87.5
arahy.Tifrunner.gnm1.ann1.3G7H7K Arachis hypogaea HOM05D002496 ORTHO05D002787 2.2e-220 768.8 414 86.5
Glyma.05G167200 Glycine max HOM05D002496 ORTHO05D002787 2.8e-220 768.5 414 86.2
Lalb_Chr13g0295581 Lupinus albus HOM05D002496 ORTHO05D002787 2.8e-220 768.5 414 86.2
arahy.Tifrunner.gnm1.ann1.P751E4 Arachis hypogaea HOM05D002496 ORTHO05D002787 4.8e-220 767.7 414 86.2
Zm00001eb014030 Zea mays HOM05D002496 ORTHO05D002787 5.3e-219 764.2 410 86.6
Aa31LG10G1150 Aethionema arabicum HOM05D002496 ORTHO05D002787 2.0e-218 762.3 413 86.7
HPP92_024699 Vanilla planifolia HOM05D002496 ORTHO05D002787 1.1e-216 756.5 412 84.5
ECA233G0145 Erigeron canadensis HOM05D002496 ORTHO05D002787 1.4e-211 739.6 384 89.8
Lsat_1_v5_gn_6_53141 Lactuca sativa HOM05D002496 ORTHO05D002787 2.0e-210 735.7 374 91.4
CAN.G2376.2 Capsicum annuum HOM05D002496 ORTHO05D002787 4.5e-210 734.6 393 86.8
CAN.G2119.1 Capsicum annuum HOM05D002496 ORTHO05D002787 6.5e-209 730.7 387 87.6
SEGI_26512 Sequoiadendron giganteum HOM05D002496 ORTHO05D002787 6.1e-207 724.2 410 83.2
SMO332G0020 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 2.6e-202 708.8 410 81.5
SMO334G0130 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 2.6e-202 708.8 410 81.5
Mapoly0026s0090 Marchantia polymorpha HOM05D002496 ORTHO05D002787 1.9e-200 702.6 412 79.1
AagrBONN_evm.TU.Sc2ySwM_344.939 Anthoceros agrestis HOM05D002496 ORTHO05D002787 1.4e-198 696.4 414 77.8
CAN.G1751.13 Capsicum annuum HOM05D002496 ORTHO05D002787 7.5e-197 690.6 396 82.1
Mapoly0026s0110 Marchantia polymorpha HOM05D002496 ORTHO05D002787 1.8e-195 686.0 412 76.5
Pp3c17_17550 Physcomitrium patens HOM05D002496 ORTHO05D002787 2.4e-195 685.6 413 77.0
COL.COLO4_05794 Corchorus olitorius HOM05D002496 ORTHO05D002787 1.8e-190 669.5 382 83.2
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 1.5e-181 639.8 336 88.1
FvH4_3g45670 Fragaria vesca HOM05D002496 ORTHO05D002787 2.4e-171 605.9 324 88.0
CBR_g23680 Chara braunii HOM05D002496 ORTHO05D002787 2.6e-165 585.9 402 65.7
CAN.G1669.10 Capsicum annuum HOM05D002496 ORTHO05D002787 4.9e-156 555.1 322 81.1
Gohir.D03G146400 Gossypium hirsutum HOM05D002496 ORTHO05D002787 2.8e-143 512.7 259 92.7
Atru.chr3.2106 Acer truncatum HOM05D002496 ORTHO05D002787 1.8e-126 456.8 233 91.8
FAN11G3798 Fragaria x ananassa HOM05D002496 ORTHO05D002787 1.5e-125 453.8 225 92.4
FvH4_3g45640 Fragaria vesca HOM05D002496 ORTHO05D002787 2.9e-124 449.5 232 90.5
CAN.G1783.6 Capsicum annuum HOM05D002496 ORTHO05D002787 3.9e-121 439.1 233 88.4
FAN25G1480 Fragaria x ananassa HOM05D002496 ORTHO05D002787 1.3e-116 424.1 224 87.9
FAN11G2291 Fragaria x ananassa HOM05D002496 ORTHO05D002787 7.4e-104 381.7 204 88.2
CiPaw.14G136900 Carya illinoinensis HOM05D002496 ORTHO05D002787 7.9e-98 361.7 187 86.6
Dinv11477 Davidia involucrata HOM05D002496 ORTHO05D002787 1.7e-92 344.0 182 87.4
CAN.G1783.5 Capsicum annuum HOM05D002496 ORTHO05D002787 5.5e-83 312.4 172 82.6
CAN.G1669.5 Capsicum annuum HOM05D002496 ORTHO05D002787 8.5e-76 288.5 370 46.5
Manes.15G109101 Manihot esculenta HOM05D002496 ORTHO05D000252 4.1e-54 216.5 121 87.6
FAN04G0904 Fragaria x ananassa HOM05D002496 ORTHO05D002787 5.6e-51 206.1 102 93.1
CBR_g37133 Chara braunii HOM05D002496 ORTHO05D002787 4.7e-50 203.0 261 41.4
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 1.1e-49 201.8 147 68.7
CBR_g39746 Chara braunii HOM05D002496 ORTHO05D002787 1.2e-45 188.3 444 32.2
Cre02.g112250 Chlamydomonas reinhardtii HOM05D002496 ORTHO05D002787 1.3e-44 184.9 289 37.0
Cre02.g112300 Chlamydomonas reinhardtii HOM05D002496 ORTHO05D002787 2.8e-42 177.2 296 37.2
Cre10.g448850 Chlamydomonas reinhardtii HOM05D002496 ORTHO05D002787 6.4e-39 166.0 464 30.0
CBR_g23253 Chara braunii HOM05D002496 ORTHO05D002787 1.1e-38 165.2 212 43.4
MCO05G112 Micromonas commoda HOM05D002496 ORTHO05D002787 7.8e-37 159.1 319 32.6
MCO07G349 Micromonas commoda HOM05D002496 ORTHO05D002787 1.1e-35 155.2 302 32.8
FAN21G2381 Fragaria x ananassa HOM05D002496 ORTHO05D002787 5.4e-30 136.3 100 64.0
CBR_g38074 Chara braunii HOM05D007859 ORTHO05D002787 1.3e-28 131.7 176 42.6
CBR_g38075 Chara braunii HOM05D000019 ORTHO05D002787 3.0e-28 130.6 218 37.6
Cre17.g728300 Chlamydomonas reinhardtii HOM05D002496 ORTHO05D002787 3.0e-28 130.6 333 30.3
Cre05.g241202 Chlamydomonas reinhardtii HOM05D002496 ORTHO05D002787 7.3e-27 125.9 312 34.0
PRCOL_00006516 Prasinoderma coloniale HOM05D002496 ORTHO05D002787 2.6e-24 117.5 200 35.0
MCO11G888 Micromonas commoda HOM05D002496 ORTHO05D002787 2.4e-22 110.9 314 29.6
CAN.G2026.4 Capsicum annuum HOM05D002496 ORTHO05D002787 8.7e-20 102.4 57 80.7
HPP92_024697 Vanilla planifolia HOM05D002496 ORTHO05D002787 8.7e-20 102.4 208 35.6
Actinidia30436 Actinidia chinensis HOM05D002496 ORTHO05D002787 5.6e-19 99.8 135 46.7
MCO09G147 Micromonas commoda HOM05D002496 ORTHO05D002787 8.1e-18 95.9 309 27.5
MCO16G075 Micromonas commoda HOM05D002496 ORTHO05D002787 1.4e-14 85.1 159 34.6
FvH4_3g45710 Fragaria vesca HOM05D002496 ORTHO05D002787 6.0e-13 79.7 34 94.1
C03p92650 Brassica napus HOM05D002496 ORTHO05D002787 4.3e-11 73.6 33 87.9
Haze_13303 Corylus avellana HOM05D000007 ORTHO05D000039 4.0e-09 67.0 42 81.0
CBR_g38072 Chara braunii HOM05D002496 ORTHO05D134925 9.3e-06 55.8 76 38.2


User provided reference genes

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