Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 4.3e-277 957.6 576 100.0
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 8.4e-188 661.0 523 75.3
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 4.9e-111 406.0 642 42.1
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 4.9e-111 406.0 581 50.3
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 3.9e-108 396.4 583 44.8
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 1.6e-106 391.0 572 42.5
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 3.6e-106 389.8 601 43.4
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 8.9e-105 385.2 596 50.2
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 8.9e-105 385.2 582 46.6
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 1.2e-104 384.8 605 44.8
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 3.4e-104 383.3 616 48.9
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 2.9e-103 380.2 596 45.8
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 8.3e-103 378.6 582 45.4
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 3.5e-101 373.2 669 47.8
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 4.6e-101 372.9 600 46.0
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 6.0e-101 372.5 582 48.5
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 1.7e-100 370.9 593 44.5
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 2.3e-100 370.5 593 47.4
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 3.0e-100 370.2 577 47.3
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 3.0e-100 370.2 574 49.8
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 3.0e-100 370.2 580 42.9
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 3.9e-100 369.8 589 49.7
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 4.3e-99 366.3 574 48.4
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 5.6e-99 365.9 576 44.4
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 5.6e-99 365.9 598 43.1
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 2.1e-98 364.0 574 49.0
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 2.8e-98 363.6 584 45.0
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 4.7e-98 362.8 604 41.7
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 1.8e-97 360.9 582 43.6
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 4.0e-97 359.8 592 46.5
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 8.9e-97 358.6 582 43.5
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 1.5e-96 357.8 583 45.3
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 3.7e-95 353.2 587 45.0
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 6.4e-95 352.4 618 47.7
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 4.1e-94 349.7 578 51.7
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 7.1e-94 349.0 536 51.1
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 4.6e-93 346.3 588 45.2
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 6.0e-93 345.9 597 46.2
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 7.8e-93 345.5 614 39.6
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 7.8e-93 345.5 583 44.3
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 2.3e-92 344.0 641 47.3
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 2.3e-92 344.0 580 46.6
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 3.9e-92 343.2 575 45.6
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 5.1e-92 342.8 603 47.1
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 5.1e-92 342.8 575 43.1
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 8.6e-92 342.0 574 40.4
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 4.3e-91 339.7 581 40.3
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 9.6e-91 338.6 618 44.3
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 1.2e-90 338.2 573 45.0
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 2.1e-90 337.4 602 44.9
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 2.8e-90 337.0 587 45.0
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 3.6e-90 336.7 624 43.6
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 6.2e-90 335.9 535 46.4
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 1.8e-89 334.3 600 44.5
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 4.0e-89 333.2 592 43.2
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 2.0e-88 330.9 596 42.8
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 2.0e-88 330.9 514 46.3
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 2.6e-88 330.5 581 42.7
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 4.4e-88 329.7 600 47.3
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 5.8e-88 329.3 592 42.9
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 2.2e-87 327.4 579 41.8
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 2.9e-87 327.0 610 44.3
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 3.8e-87 326.6 576 46.9
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 4.9e-87 326.2 583 41.3
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 8.4e-87 325.5 577 47.0
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 1.9e-86 324.3 591 47.0
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 1.9e-86 324.3 581 44.9
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 1.9e-86 324.3 600 43.2
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 2.4e-86 323.9 557 46.0
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 1.2e-85 321.6 576 46.4
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 6.0e-85 319.3 581 42.5
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 6.0e-85 319.3 581 42.5
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 7.8e-85 318.9 582 42.6
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 1.7e-84 317.8 586 40.1
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 2.3e-84 317.4 588 40.6
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 3.9e-84 316.6 598 41.5
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 8.7e-84 315.5 593 43.7
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 1.5e-83 314.7 577 46.8
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 4.3e-83 313.2 589 40.6
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 2.1e-82 310.8 588 40.3
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 2.4e-81 307.4 589 41.4
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 5.8e-80 302.8 579 45.3
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 9.9e-80 302.0 581 39.4
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 3.8e-79 300.1 566 40.5
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 1.0e-76 292.0 601 40.6
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 1.7e-76 291.2 632 41.3
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 2.3e-76 290.8 539 44.9
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 1.9e-75 287.7 606 39.6
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 1.4e-73 281.6 517 44.5
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 2.0e-72 277.7 504 43.8
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 2.9e-71 273.9 219 65.3
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 2.0e-64 251.1 269 56.5
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 4.5e-64 250.0 214 61.7
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 1.3e-63 248.4 188 72.9
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 3.8e-63 246.9 337 46.6
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 8.4e-63 245.7 167 73.1
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 3.2e-62 243.8 165 73.3
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 7.1e-62 242.7 600 37.8
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 7.1e-62 242.7 583 40.7
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 3.5e-61 240.4 575 33.7
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 6.0e-61 239.6 220 63.2
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 2.3e-60 237.7 149 74.5
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 1.5e-59 235.0 259 52.5
TPR.G23111 Trifolium pratense HOM05D004380 ORTHO05D005134 1.5e-59 235.0 148 72.3
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 7.4e-59 232.6 586 40.3
Cpa.g.sc69.32 Carica papaya HOM05D004380 ORTHO05D005134 9.0e-57 225.7 148 71.6
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 1.5e-56 224.9 179 64.8
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 1.5e-56 224.9 217 54.4
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 2.2e-55 221.1 155 66.5
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 3.8e-55 220.3 158 75.9
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 9.3e-54 215.7 543 39.0
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 1.2e-53 215.3 177 62.7
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 1.1e-51 208.8 217 52.5
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 3.3e-51 207.2 514 34.2
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 9.7e-51 205.7 222 51.4
DCAR_007574 Daucus carota HOM05D004380 ORTHO05D005134 2.8e-50 204.1 149 65.1
arahy.Tifrunner.gnm1.ann1.MH0ZUI Arachis hypogaea HOM05D004380 ORTHO05D005134 1.1e-49 202.2 113 79.6
TPR.G20578 Trifolium pratense HOM05D004380 ORTHO05D005134 1.1e-49 202.2 113 78.8
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 2.4e-49 201.1 190 56.3
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 1.1e-46 192.2 158 71.5
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 9.7e-43 179.1 506 37.9
CSS0001415 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 1.2e-37 162.2 86 81.4
CSS0037993 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 1.2e-37 162.2 86 81.4
Cre01.g003487 Chlamydomonas reinhardtii HOM05D004380 ORTHO05D005134 6.1e-37 159.8 198 48.0
Oeu037610.2 Olea europaea HOM05D004380 ORTHO05D005134 1.7e-34 151.8 458 37.1
MCO15G532 Micromonas commoda HOM05D004380 ORTHO05D005134 2.6e-32 144.4 216 39.4
CSS0014122 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 1.6e-29 135.2 401 39.9
CSS0026269 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 1.6e-29 135.2 401 39.9
PRCOL_00005638 Prasinoderma coloniale HOM05D004380 ORTHO05D005134 3.6e-29 134.0 212 39.2
Hund11272 Selenicereus undatus HOM05D004380 ORTHO05D005134 3.6e-29 134.0 140 60.0
Ca_23634_v3 Cicer arietinum L. HOM05D000346 ORTHO05D000326 8.0e-29 132.9 412 36.9
Haze_13061 Corylus avellana HOM05D000001 ORTHO05D010365 1.8e-28 131.7 141 57.4
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 2.4e-25 121.3 518 26.3
Sp5g21510 Schrenkiella parvula HOM05D004380 ORTHO05D005134 5.3e-25 120.2 98 60.2
QL12p007207 Quercus lobata HOM05D004380 ORTHO05D005134 1.2e-24 119.0 150 51.3
Lsat_1_v5_gn_3_2421 Lactuca sativa HOM05D004380 ORTHO05D005134 2.7e-24 117.9 140 52.9
Zm00001eb400590 Zea mays HOM05D004380 ORTHO05D005134 1.6e-21 108.6 154 46.1
SHI10270 Sapria himalayana HOM05D004380 ORTHO05D005134 2.6e-19 101.3 133 53.4
AL3G52660 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 1.3e-18 99.0 66 66.7
Dinv40656 Davidia involucrata HOM05D000301 ORTHO05D000303 2.8e-18 97.8 57 70.2
HPP92_020129 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.6e-16 92.0 109 48.6
TPR.G22617 Trifolium pratense HOM05D004380 ORTHO05D005134 1.5e-14 85.5 74 62.2
COL.COLO4_33038 Corchorus olitorius HOM05D004380 ORTHO05D005134 1.6e-13 82.0 91 54.9
Cfa026589 Carpinus fangiana HOM05D004380 ORTHO05D005134 6.8e-12 76.6 115 38.3
C05p31200 Brassica napus HOM05D004380 ORTHO05D005134 9.8e-11 72.8 64 59.4
CAN.G1186.1 Capsicum annuum HOM05D004380 ORTHO05D005134 3.1e-09 67.8 154 42.2
Cpa.g.c30383 Carica papaya HOM05D004380 ORTHO05D005134 1.7e-07 62.0 59 61.0
TPR.G11131 Trifolium pratense HOM05D004380 ORTHO05D005134 2.3e-07 61.6 133 36.1
Lj2C247T7 Lonicera japonica HOM05D004380 ORTHO05D005134 5.0e-07 60.5 76 50.0
Medtr8g446970 Medicago truncatula HOM05D004380 ORTHO05D005134 5.0e-07 60.5 65 46.2
A09p34380 Brassica napus HOM05D004380 ORTHO05D005134 5.6e-06 57.0 51 56.9


User provided reference genes

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