Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 4.5e-297 1023.8 521 100.0
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 4.6e-286 987.3 521 96.5
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 2.3e-232 808.9 498 79.9
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 2.5e-231 805.4 484 81.2
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 1.6e-230 802.7 507 79.5
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 3.1e-229 798.5 514 78.6
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 5.2e-229 797.7 480 82.5
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 2.6e-228 795.4 462 83.5
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 3.7e-227 791.6 462 83.1
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 3.7e-227 791.6 482 81.7
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 4.9e-227 791.2 482 81.5
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 4.9e-227 791.2 511 76.9
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 1.4e-226 789.6 461 83.1
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 3.2e-226 788.5 461 82.6
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 4.1e-226 788.1 465 81.3
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 5.4e-226 787.7 513 76.4
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 5.4e-226 787.7 461 82.6
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 9.2e-226 786.9 500 77.2
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 9.2e-226 786.9 473 80.8
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 1.2e-225 786.6 483 79.1
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 3.5e-225 785.0 480 80.2
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 1.7e-224 782.7 459 82.8
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 6.6e-224 780.8 461 81.6
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 8.6e-224 780.4 535 73.6
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 8.6e-224 780.4 510 77.3
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 1.9e-223 779.2 465 80.2
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 2.5e-223 778.9 461 82.2
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 2.5e-223 778.9 463 81.6
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 3.3e-223 778.5 466 81.3
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 3.3e-223 778.5 464 81.7
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 7.3e-223 777.3 511 75.7
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 7.3e-223 777.3 476 80.0
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 9.5e-223 776.9 483 78.3
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 1.2e-222 776.5 506 76.7
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 1.6e-222 776.2 462 81.8
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 2.8e-222 775.4 459 82.1
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 3.6e-222 775.0 459 82.1
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 3.6e-222 775.0 465 79.8
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 4.7e-222 774.6 465 79.6
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 4.7e-222 774.6 466 80.9
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 6.2e-222 774.2 465 79.6
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 2.3e-221 772.3 493 77.1
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 5.2e-221 771.2 461 80.7
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 5.2e-221 771.2 465 80.6
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 8.9e-221 770.4 459 81.7
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 2.0e-220 769.2 482 78.2
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 2.6e-220 768.8 461 80.9
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 4.4e-220 768.1 461 80.7
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 7.5e-220 767.3 461 81.1
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 7.5e-220 767.3 495 77.0
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 9.8e-220 766.9 482 77.8
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 9.8e-220 766.9 470 80.0
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 9.8e-220 766.9 511 74.6
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 1.7e-219 766.1 465 80.4
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 3.7e-219 765.0 470 80.4
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 4.9e-219 764.6 461 80.3
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 4.9e-219 764.6 471 79.2
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 6.4e-219 764.2 464 79.5
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 6.4e-219 764.2 484 75.8
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 8.3e-219 763.8 514 74.3
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 1.1e-218 763.5 464 80.0
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.4e-218 763.1 461 79.8
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 4.1e-218 761.5 461 80.3
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 9.2e-218 760.4 502 75.9
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 6.0e-217 757.7 459 78.9
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 6.0e-217 757.7 497 75.3
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 7.8e-217 757.3 485 75.7
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.0e-216 756.9 508 74.6
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 1.3e-216 756.5 461 79.4
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 1.7e-216 756.1 459 80.2
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 1.7e-216 756.1 513 73.3
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 3.9e-216 755.0 481 76.3
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 1.1e-215 753.4 459 78.4
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.9e-215 752.7 453 79.9
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 2.5e-215 752.3 459 78.4
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 9.5e-215 750.4 460 79.6
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 9.5e-215 750.4 503 73.2
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 1.2e-214 750.0 490 74.7
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 1.6e-214 749.6 459 77.8
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 1.6e-214 749.6 472 75.8
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 2.1e-214 749.2 516 72.3
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 2.1e-214 749.2 510 72.2
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 2.1e-214 749.2 479 79.1
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 2.1e-214 749.2 459 78.0
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 4.7e-214 748.0 459 78.0
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 1.1e-213 746.9 470 79.4
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 1.1e-213 746.9 459 78.9
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 3.1e-213 745.3 459 77.3
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 1.2e-212 743.4 463 76.9
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 1.5e-212 743.0 457 78.6
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 2.0e-212 742.7 459 76.9
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 2.9e-211 738.8 525 70.1
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.9e-211 738.8 517 71.8
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 6.4e-211 737.6 511 72.6
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 1.9e-210 736.1 521 71.4
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 9.2e-210 733.8 549 67.9
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 1.2e-209 733.4 538 68.8
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 3.5e-209 731.9 458 75.3
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 4.6e-209 731.5 502 71.3
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 5.1e-208 728.0 494 73.5
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 2.5e-207 725.7 511 71.0
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 7.3e-207 724.2 463 74.5
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 1.1e-205 720.3 469 74.8
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 5.8e-204 714.5 526 70.9
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 4.2e-202 708.4 468 73.3
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 7.8e-201 704.1 458 73.1
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.2e-198 696.8 465 76.1
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 4.4e-196 688.3 465 73.1
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.4e-194 683.3 422 78.7
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 5.1e-192 674.9 407 80.1
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 8.7e-192 674.1 431 76.8
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 3.6e-190 668.7 461 70.5
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 1.8e-189 666.4 459 71.5
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 2.1e-185 652.9 382 83.8
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 4.6e-185 651.7 382 83.8
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 5.1e-184 648.3 467 71.3
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 1.9e-183 646.4 423 77.8
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 1.3e-182 643.7 453 68.2
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 2.8e-182 642.5 453 70.0
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 6.2e-182 641.3 373 83.4
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 5.5e-178 628.2 373 81.2
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 1.0e-176 624.0 459 69.3
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 1.3e-171 607.1 382 80.1
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 2.5e-170 602.8 712 48.2
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 1.6e-169 600.1 453 66.2
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 1.3e-168 597.0 425 69.6
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 3.3e-167 592.4 458 66.8
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 2.7e-161 572.8 366 79.5
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 9.7e-151 537.7 394 71.3
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 4.3e-114 416.0 316 68.0
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 4.0e-112 409.5 238 82.8
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 5.4e-109 399.1 252 78.2
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 9.5e-98 361.7 292 62.7
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 4.9e-94 349.4 458 41.7
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 5.4e-93 345.9 245 73.1
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 6.0e-92 342.4 200 84.0
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 1.9e-90 337.4 448 40.4
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 9.9e-87 325.1 452 39.8
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 1.3e-73 281.6 225 63.1
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 6.2e-65 252.7 400 41.5
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 2.5e-58 230.7 131 84.7
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 3.8e-54 216.9 183 61.7
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 5.0e-54 216.5 196 59.2
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 6.1e-52 209.5 166 66.9
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 5.1e-51 206.5 167 62.3
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 8.5e-46 189.1 124 66.9
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 5.5e-45 186.4 98 91.8
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 1.0e-43 182.2 249 43.0
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 3.9e-43 180.3 131 61.1
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 7.4e-42 176.0 394 31.5
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 1.7e-38 164.9 91 86.8
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 2.3e-35 154.5 120 63.3
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 3.1e-32 144.1 80 86.2
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 5.9e-31 139.8 93 77.4
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.7e-30 138.3 129 50.4
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 4.0e-27 127.1 290 30.0
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 1.1e-26 125.6 100 64.0
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 2.0e-26 124.8 109 60.6
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 9.7e-26 122.5 74 81.1
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 8.3e-17 92.8 55 70.9
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 1.8e-11 75.1 67 56.7
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 5.2e-11 73.6 47 70.2
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 5.7e-10 70.1 36 88.9
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 1.7e-09 68.6 57 63.2
SMO197G0092 Selaginella moellendorffii HOM05D003197 ORTHO05D003769 2.0e-07 61.6 276 28.6
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 3.5e-07 60.8 35 77.1
Lj5A370G55 Lonicera japonica HOM05D003197 ORTHO05D003769 5.0e-06 57.0 403 23.3
CSS0038182 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 8.6e-06 56.2 279 25.1
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 8.6e-06 56.2 34 73.5


User provided reference genes

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