Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.6e-177 624.8 310 100.0
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.2e-132 476.9 447 61.3
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 7.6e-127 457.6 350 68.0
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 1.3e-126 456.8 354 65.5
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 1.7e-126 456.4 350 67.7
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 3.8e-126 455.3 356 66.6
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 4.9e-126 454.9 350 66.3
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 4.9e-126 454.9 350 66.3
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 5.4e-125 451.4 356 65.7
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 9.3e-125 450.7 359 64.9
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 1.2e-124 450.3 353 67.1
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 1.2e-124 450.3 349 66.8
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 2.1e-124 449.5 353 66.9
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 2.7e-124 449.1 359 65.5
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 6.0e-124 448.0 347 66.3
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 7.9e-124 447.6 352 65.1
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 1.0e-123 447.2 368 64.4
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 1.3e-123 446.8 348 66.4
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 2.3e-123 446.0 348 67.0
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 8.7e-123 444.1 354 65.5
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 8.7e-123 444.1 352 64.8
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 1.5e-122 443.4 353 64.9
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.9e-122 443.0 360 66.7
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 3.3e-122 442.2 356 64.3
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 4.3e-122 441.8 348 64.9
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 4.3e-122 441.8 350 64.6
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 5.6e-122 441.4 353 64.9
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 9.6e-122 440.7 361 64.3
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 1.3e-121 440.3 349 65.3
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 1.6e-121 439.9 346 65.9
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 1.6e-121 439.9 360 62.5
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 1.6e-121 439.9 350 64.3
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.1e-121 439.5 345 64.9
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 3.7e-121 438.7 350 64.0
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 4.8e-121 438.3 350 64.0
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 6.2e-121 438.0 356 62.6
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 6.2e-121 438.0 345 64.6
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 1.1e-120 437.2 339 66.7
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 1.4e-120 436.8 356 64.3
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 1.4e-120 436.8 356 64.6
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 1.8e-120 436.4 339 66.4
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 2.4e-120 436.0 360 61.9
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 3.1e-120 435.6 353 64.9
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 3.1e-120 435.6 359 63.5
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 4.0e-120 435.3 348 63.8
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 4.0e-120 435.3 348 63.8
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 5.3e-120 434.9 352 64.2
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 5.3e-120 434.9 352 63.6
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 5.3e-120 434.9 356 62.6
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.3e-120 434.9 356 62.6
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.3e-120 434.9 356 62.6
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 5.3e-120 434.9 335 66.0
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 5.3e-120 434.9 363 63.4
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 6.9e-120 434.5 348 63.5
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 6.9e-120 434.5 339 64.0
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 9.0e-120 434.1 350 62.9
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 9.0e-120 434.1 335 65.7
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 1.2e-119 433.7 360 63.3
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 1.5e-119 433.3 345 64.6
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 1.5e-119 433.3 354 63.6
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 2.0e-119 433.0 355 63.1
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 2.6e-119 432.6 347 64.0
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 2.6e-119 432.6 348 63.8
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 2.6e-119 432.6 354 63.0
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 2.6e-119 432.6 360 63.3
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.5e-119 431.8 319 71.5
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 4.5e-119 431.8 356 63.5
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 5.8e-119 431.4 339 64.3
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 5.8e-119 431.4 356 63.5
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 7.6e-119 431.0 347 64.3
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 7.6e-119 431.0 348 63.2
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 7.6e-119 431.0 348 63.2
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 7.6e-119 431.0 348 63.2
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 7.6e-119 431.0 354 62.7
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 7.6e-119 431.0 356 61.8
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 9.9e-119 430.6 356 63.5
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 1.3e-118 430.3 350 61.7
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 1.3e-118 430.3 356 62.4
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 2.2e-118 429.5 356 64.3
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 2.2e-118 429.5 356 63.5
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 2.9e-118 429.1 345 65.2
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 4.9e-118 428.3 346 62.4
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 4.9e-118 428.3 354 62.1
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 4.9e-118 428.3 337 64.1
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 6.4e-118 427.9 348 63.2
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 1.1e-117 427.2 359 61.3
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 1.1e-117 427.2 351 63.2
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.4e-117 426.8 350 61.4
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 1.4e-117 426.8 351 63.8
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 1.9e-117 426.4 359 61.0
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.9e-117 426.4 350 61.1
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 1.9e-117 426.4 333 66.1
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 2.4e-117 426.0 345 64.9
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 2.4e-117 426.0 358 62.0
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 3.2e-117 425.6 350 63.4
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 4.2e-117 425.2 338 62.7
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 4.2e-117 425.2 340 64.4
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 9.3e-117 424.1 356 62.9
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 3.5e-116 422.2 332 63.6
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 7.9e-116 421.0 356 61.8
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 1.0e-115 420.6 350 62.0
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 1.0e-115 420.6 359 61.6
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 1.3e-115 420.2 356 61.0
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 3.0e-115 419.1 406 56.4
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 3.9e-115 418.7 357 62.5
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.3e-113 413.7 358 60.9
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 1.6e-113 413.3 397 57.2
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 3.7e-113 412.1 340 60.6
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 1.5e-111 406.8 333 62.5
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 1.5e-111 406.8 345 59.1
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 2.6e-111 406.0 345 63.5
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 1.0e-110 404.1 345 63.2
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 8.4e-110 401.0 345 62.3
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 1.4e-109 400.2 418 54.1
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 1.2e-108 397.1 344 59.9
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 1.2e-108 397.1 306 65.7
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.3e-107 393.7 346 60.4
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 3.9e-107 392.1 369 58.3
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 4.8e-105 385.2 279 68.1
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 1.4e-104 383.6 285 67.0
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.8e-104 383.3 322 65.5
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 2.4e-104 382.9 353 57.2
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 2.0e-103 379.8 364 56.6
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 1.0e-102 377.5 361 56.0
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 2.9e-102 375.9 345 58.8
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 4.2e-101 372.1 373 55.2
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 1.2e-100 370.5 358 53.4
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 1.2e-100 370.5 332 57.5
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 1.3e-99 367.1 349 56.7
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 8.7e-99 364.4 393 54.2
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.3e-97 360.5 265 71.3
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 1.2e-95 354.0 329 56.5
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 1.2e-95 354.0 308 59.7
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 2.6e-95 352.8 302 60.9
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 5.9e-95 351.7 356 52.2
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 5.5e-93 345.1 356 54.5
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 3.4e-87 325.9 281 60.1
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.2e-84 317.4 332 54.8
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 1.6e-84 317.0 270 56.3
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.8e-72 276.9 388 45.9
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 6.8e-67 258.5 336 45.5
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 8.8e-67 258.1 196 65.8
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 2.2e-65 253.4 336 42.3
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 4.7e-60 235.7 357 42.6
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 4.6e-47 192.6 105 86.7
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 1.4e-40 171.0 309 41.4
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 5.4e-40 169.1 304 39.8
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 7.8e-39 165.2 256 37.9
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 2.0e-34 150.6 383 29.0
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 8.3e-33 145.2 96 72.9
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 6.2e-28 129.0 131 51.1
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 2.4e-27 127.1 117 59.8
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 4.6e-23 112.8 82 67.1
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 1.4e-19 101.3 105 49.5
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 1.4e-19 101.3 115 47.0
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 6.6e-14 82.4 117 41.9
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 4.6e-07 59.7 64 54.7
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 1.0e-06 58.5 89 46.1


User provided reference genes

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