Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0006 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 4.9e-89 332.0 313 100.0
CDE02G0352 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 5.6e-37 159.1 348 70.4
Lj1C1032G4 Lonicera japonica HOM05D007456 ORTHO05D009411 3.0e-22 110.2 165 39.4
Lsat_1_v5_gn_4_134121 Lactuca sativa HOM05D007456 ORTHO05D009411 1.5e-18 97.8 101 50.5
Eucgr.F03554 Eucalyptus grandis HOM05D006705 ORTHO05D008179 2.0e-18 97.4 102 48.0
VMungo1309G2580 Vigna mungo HOM05D006705 ORTHO05D008179 1.7e-17 94.4 111 44.1
Nitab4.5_0002710g0130 Nicotiana tabacum HOM05D006705 ORTHO05D008179 2.5e-16 90.5 104 47.1
MD15G1002100 Malus domestica HOM05D006705 ORTHO05D008179 3.0e-14 83.6 68 54.4
PGR142G2334 Punica granatum HOM05D007456 ORTHO05D009411 9.7e-13 78.6 56 62.5
AUR62036875 Chenopodium quinoa HOM05D006705 ORTHO05D008179 1.1e-11 75.1 79 46.8
Cc11_g03880 Coffea canephora HOM05D007456 ORTHO05D009411 1.1e-11 75.1 73 54.8
Nn1g09307 Nelumbo nucifera HOM05D007456 ORTHO05D009411 1.8e-11 74.3 53 67.9
CDE11G0312 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 2.4e-11 73.9 39 89.7
TAR375G0715 Trochodendron aralioides HOM05D007456 ORTHO05D009411 5.3e-11 72.8 53 67.9
TAR375G0927 Trochodendron aralioides HOM05D007456 ORTHO05D009411 5.3e-11 72.8 53 67.9
HPP92_008353 Vanilla planifolia HOM05D006705 ORTHO05D008179 6.9e-11 72.4 53 58.5
ClCG07G017250 Citrullus lanatus HOM05D007456 ORTHO05D009411 1.2e-10 71.6 54 61.1
AT5G36300 Arabidopsis thaliana HOM05D007456 ORTHO05D009411 2.0e-10 70.9 137 35.0
Gohir.D06G036701 Gossypium hirsutum HOM05D006705 ORTHO05D008179 2.0e-10 70.9 56 57.1
Gorai.010G041000 Gossypium raimondii HOM05D006705 ORTHO05D008179 2.0e-10 70.9 83 45.8
CsaV3_4G004450 Cucumis sativus L. HOM05D007456 ORTHO05D009411 4.5e-10 69.7 54 59.3
Aqoxy3G00913 Aquilegia oxysepala HOM05D007456 ORTHO05D009411 1.0e-09 68.6 54 57.4
GSVIVG01024456001 Vitis vinifera HOM05D007456 ORTHO05D009411 1.7e-09 67.8 53 62.3
Gohir.D05G336850 Gossypium hirsutum HOM05D006705 ORTHO05D008179 2.2e-09 67.4 65 50.8
Lsat_1_v5_gn_2_37640 Lactuca sativa HOM05D007456 ORTHO05D009411 3.8e-09 66.6 79 46.8
Oeu055445.1 Olea europaea HOM05D007456 ORTHO05D009411 3.8e-09 66.6 48 64.6
CDE02G4098 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 5.0e-09 66.2 50 60.0
Nitab4.5_0004532g0030 Nicotiana tabacum HOM05D007456 ORTHO05D009411 5.0e-09 66.2 48 66.7
Thecc.05G207800 Theobroma cacao HOM05D007456 ORTHO05D009411 5.0e-09 66.2 53 60.4
Sed0026452 Sechium edule HOM05D007456 ORTHO05D009411 1.1e-08 65.1 54 55.6
MSTRG.26940 Avicennia marina HOM05D007456 ORTHO05D009411 1.4e-08 64.7 54 57.4
Nitab4.5_0016432g0010 Nicotiana tabacum HOM05D007456 ORTHO05D009411 1.4e-08 64.7 48 64.6
Rhsim03G0219800 Rhododendron simsii HOM05D007456 ORTHO05D009411 1.4e-08 64.7 41 70.7
CSS0004504 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 1.9e-08 64.3 51 56.9
CSS0019684 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 1.9e-08 64.3 51 56.9
CAN.G128.20 Capsicum annuum HOM05D007456 ORTHO05D009411 1.9e-08 64.3 49 63.3
Peaxi162Scf00398g00211 Petunia axillaris HOM05D007456 ORTHO05D009411 2.5e-08 63.9 49 65.3
SGA_v2.0_scaffold108G30860 Striga asiatica HOM05D006705 ORTHO05D008179 2.5e-08 63.9 46 65.2
AUR62005926 Chenopodium quinoa HOM05D007456 ORTHO05D009411 3.2e-08 63.5 53 52.8
Atru.BG.267.p Acer truncatum HOM05D007456 ORTHO05D009411 4.2e-08 63.2 75 45.3
Glyma.11G013600 Glycine max HOM05D007456 ORTHO05D009411 4.2e-08 63.2 48 58.3
MD12G1003200 Malus domestica HOM05D006705 ORTHO05D008179 4.2e-08 63.2 50 56.0
BcaB06g27033 Brassica carinata HOM05D007456 ORTHO05D009411 5.5e-08 62.8 77 40.3
Glyma.01G230600 Glycine max HOM05D007456 ORTHO05D009411 5.5e-08 62.8 49 55.1
Thhalv10004016m.g Eutrema salsugineum HOM05D007456 ORTHO05D009411 7.2e-08 62.4 75 44.0
FAN03G3193 Fragaria x ananassa HOM05D007456 ORTHO05D009411 7.2e-08 62.4 54 50.0
FvH4_7g33490 Fragaria vesca HOM05D007456 ORTHO05D009411 9.4e-08 62.0 53 52.8
FvH4_7g33530 Fragaria vesca HOM05D007456 ORTHO05D009411 9.4e-08 62.0 53 52.8
Sopen10g030890 Solanum pennellii HOM05D007456 ORTHO05D009411 9.4e-08 62.0 49 63.3
AUR62018885 Chenopodium quinoa HOM05D007456 ORTHO05D009411 1.6e-07 61.2 53 52.8
PGSC0003DMG400023682 Solanum tuberosum HOM05D007456 ORTHO05D009411 1.6e-07 61.2 49 61.2
vmacro21812 Vaccinium macrocarpon HOM05D006705 ORTHO05D008179 1.6e-07 61.2 49 55.1
ATR0661G389 Amborella trichopoda HOM05D006705 ORTHO05D008179 2.1e-07 60.8 47 59.6
Cpa.g.sc252.22 Carica papaya HOM05D007456 ORTHO05D009411 2.1e-07 60.8 52 57.7
Lj9A258G53 Lonicera japonica HOM05D007456 ORTHO05D009411 2.1e-07 60.8 48 58.3
MBI13_g23885_MAGBIO Magnolia biondii HOM05D007456 ORTHO05D009411 2.1e-07 60.8 52 53.8
BcaC02g09523 Brassica carinata HOM05D007456 ORTHO05D009411 2.7e-07 60.5 53 54.7
C04p43710 Brassica napus HOM05D007456 ORTHO05D009411 2.7e-07 60.5 53 54.7
BolC4t25953H Brassica oleracea HOM05D007456 ORTHO05D009411 2.7e-07 60.5 53 54.7
AL7G45310 Arabidopsis lyrata HOM05D007456 ORTHO05D009411 3.6e-07 60.1 49 57.1
SEGI_07154 Sequoiadendron giganteum HOM05D007456 ORTHO05D009411 3.6e-07 60.1 72 43.1
Gohir.A05G338400 Gossypium hirsutum HOM05D007456 ORTHO05D009411 4.7e-07 59.7 53 52.8
Gorai.012G086600 Gossypium raimondii HOM05D007456 ORTHO05D009411 4.7e-07 59.7 53 52.8
RcHm_v2.0_Chr1g0383591 Rosa chinensis HOM05D007456 ORTHO05D009411 4.7e-07 59.7 53 54.7
Dinv11972 Davidia involucrata HOM05D007456 ORTHO05D009411 6.1e-07 59.3 45 64.4
THA.LOC104823813 Tarenaya hassleriana HOM05D007456 ORTHO05D009411 6.1e-07 59.3 49 55.1
CSS0006842 Camellia sinensis var. sinensis HOM05D007456 ORTHO05D009411 7.9e-07 58.9 64 50.0
QL09p026466 Quercus lobata HOM05D007456 ORTHO05D009411 7.9e-07 58.9 46 58.7
QL09p026540 Quercus lobata HOM05D007456 ORTHO05D009411 7.9e-07 58.9 46 58.7
Gohir.D04G076800 Gossypium hirsutum HOM05D007456 ORTHO05D009411 1.0e-06 58.5 53 50.9
Prupe.1G354600 Prunus persica HOM05D006705 ORTHO05D008179 1.0e-06 58.5 49 55.1
AUR62029986 Chenopodium quinoa HOM05D001779 ORTHO05D001753 1.4e-06 58.2 104 32.7
MBI08_g41522_MAGBIO Magnolia biondii HOM05D006705 ORTHO05D008179 1.4e-06 58.2 47 57.4
FAN10G0306 Fragaria x ananassa HOM05D007456 ORTHO05D009411 1.8e-06 57.8 50 52.0
FAN10G3274 Fragaria x ananassa HOM05D007456 ORTHO05D009411 1.8e-06 57.8 50 52.0
A04p10240 Brassica napus HOM05D007456 ORTHO05D009411 2.3e-06 57.4 53 52.8
BraA04t16690Z Brassica rapa HOM05D007456 ORTHO05D009411 2.3e-06 57.4 53 52.8
Nitab4.5_0000337g0230 Nicotiana tabacum HOM05D006705 ORTHO05D008179 2.3e-06 57.4 47 57.4
Sp7g05790 Schrenkiella parvula HOM05D007456 ORTHO05D009411 2.3e-06 57.4 49 53.1
Thecc.08G058800 Theobroma cacao HOM05D006705 ORTHO05D008179 2.3e-06 57.4 48 54.2
Ah.07g203680 Amaranthus hybridus HOM05D007456 ORTHO05D009411 3.0e-06 57.0 53 50.9
CDE04G2934 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 3.0e-06 57.0 44 59.1
PGSC0003DMG400011663 Solanum tuberosum HOM05D006705 ORTHO05D008179 3.0e-06 57.0 44 59.1
vmacro06487 Vaccinium macrocarpon HOM05D007456 ORTHO05D009411 3.0e-06 57.0 49 55.1
Actinidia15490 Actinidia chinensis HOM05D006705 ORTHO05D008179 3.9e-06 56.6 48 54.2
Actinidia08731 Actinidia chinensis HOM05D007456 ORTHO05D009411 5.1e-06 56.2 45 55.6
PSO761G0432 Papaver somniferum HOM05D001779 ORTHO05D001753 5.1e-06 56.2 136 30.1
Rhsim01G0125300 Rhododendron simsii HOM05D007456 ORTHO05D009411 5.1e-06 56.2 49 55.1
EL10Ac3g05110 Beta vulgaris HOM05D007456 ORTHO05D009411 6.7e-06 55.8 49 49.0
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 8.8e-06 55.5 43 55.8
Glyma.04G062100 Glycine max HOM05D000001 ORTHO05D000003 8.8e-06 55.5 116 29.3


User provided reference genes

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