Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 3.4e-231 804.7 412 100.0
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 7.0e-221 770.4 412 95.9
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 3.3e-178 628.6 411 75.7
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 2.8e-177 625.5 412 75.5
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 6.2e-177 624.4 412 75.5
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 4.0e-176 621.7 411 73.7
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 9.0e-176 620.5 412 75.0
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 3.4e-175 618.6 414 74.9
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 7.6e-175 617.5 414 74.9
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 6.5e-174 614.4 412 72.1
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 1.4e-173 613.2 412 71.8
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 1.4e-173 613.2 412 74.5
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 1.9e-173 612.8 410 74.6
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 1.9e-173 612.8 412 73.1
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 7.1e-173 610.9 410 73.9
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 1.2e-172 610.1 412 72.3
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 1.2e-172 610.1 412 74.3
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 1.6e-172 609.8 412 73.5
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 6.0e-172 607.8 412 70.6
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 7.9e-172 607.4 410 73.2
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 7.9e-172 607.4 412 70.9
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 7.9e-172 607.4 412 73.1
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 1.3e-171 606.7 414 73.2
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 5.1e-171 604.7 417 72.2
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 1.1e-170 603.6 413 73.6
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 1.1e-170 603.6 412 71.6
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 1.5e-170 603.2 412 71.1
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 1.5e-170 603.2 412 72.6
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 2.5e-170 602.4 412 72.6
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 5.7e-170 601.3 413 72.2
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 9.6e-170 600.5 413 71.9
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 1.3e-169 600.1 412 71.1
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 1.6e-169 599.7 411 72.3
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 1.6e-169 599.7 410 72.2
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 2.1e-169 599.4 415 72.0
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 2.8e-169 599.0 413 70.0
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 3.7e-169 598.6 415 73.3
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 4.8e-169 598.2 412 71.4
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 4.8e-169 598.2 412 71.4
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 6.2e-169 597.8 414 71.7
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 8.2e-169 597.4 413 72.6
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 2.4e-168 595.9 413 72.2
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 2.4e-168 595.9 414 72.0
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 2.4e-168 595.9 413 70.7
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 4.1e-168 595.1 409 70.7
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 5.3e-168 594.7 413 70.2
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 6.9e-168 594.3 415 71.3
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 9.0e-168 594.0 413 73.4
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 1.2e-167 593.6 445 68.8
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.5e-167 593.2 412 68.9
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 2.0e-167 592.8 411 72.0
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 2.6e-167 592.4 412 69.2
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 3.4e-167 592.0 416 69.7
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 4.5e-167 591.7 414 72.0
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 5.8e-167 591.3 413 69.0
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 5.8e-167 591.3 413 68.8
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 7.6e-167 590.9 412 68.7
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.3e-166 590.1 412 68.4
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 2.2e-166 589.3 415 70.4
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 2.2e-166 589.3 415 71.1
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 2.2e-166 589.3 409 70.7
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 2.9e-166 589.0 414 70.3
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 5.0e-166 588.2 412 68.4
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 6.5e-166 587.8 412 68.2
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 1.1e-165 587.0 416 70.0
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 1.1e-165 587.0 414 70.0
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 1.4e-165 586.6 417 70.7
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 1.9e-165 586.3 416 69.7
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 7.1e-165 584.3 413 70.9
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 3.5e-164 582.0 412 69.9
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 3.5e-164 582.0 412 69.9
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 6.1e-164 581.3 413 68.5
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 1.0e-163 580.5 412 68.9
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 1.0e-163 580.5 479 63.5
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.3e-163 580.1 413 68.3
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 1.3e-163 580.1 375 75.7
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 3.0e-163 578.9 412 70.1
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 3.9e-163 578.6 411 70.6
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 1.1e-162 577.0 413 67.6
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 2.5e-162 575.9 413 67.8
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 3.3e-162 575.5 413 67.3
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 5.7e-162 574.7 412 69.4
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 5.7e-162 574.7 413 67.6
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 7.4e-162 574.3 412 68.4
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 9.7e-162 573.9 412 67.2
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 9.7e-162 573.9 413 69.2
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 1.6e-161 573.2 413 67.3
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 1.6e-161 573.2 412 66.7
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 3.7e-161 572.0 410 69.3
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 4.8e-161 571.6 413 67.1
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 6.3e-161 571.2 413 67.1
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 6.3e-161 571.2 413 67.1
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 1.4e-160 570.1 413 69.0
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.8e-160 569.7 413 69.5
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 3.1e-160 568.9 417 68.3
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 3.1e-160 568.9 412 67.0
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 5.3e-160 568.2 413 68.8
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 5.3e-160 568.2 414 66.4
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 1.2e-159 567.0 413 68.8
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 1.5e-159 566.6 413 66.3
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 2.0e-159 566.2 413 68.5
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 3.4e-159 565.5 417 68.3
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 5.9e-159 564.7 413 68.3
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 7.7e-159 564.3 413 68.3
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 7.7e-159 564.3 455 63.3
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.0e-158 563.9 413 68.3
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 1.0e-158 563.9 412 67.0
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 1.7e-158 563.1 413 66.1
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 5.5e-157 558.1 410 65.4
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 9.4e-157 557.4 508 59.3
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 3.0e-155 552.4 420 67.6
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 2.2e-153 546.2 418 64.8
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 2.8e-153 545.8 466 60.7
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 1.1e-152 543.9 409 66.5
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 1.8e-152 543.1 403 68.0
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 2.9e-150 535.8 429 62.7
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 5.5e-141 505.0 410 61.5
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 9.4e-141 504.2 409 62.1
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 2.7e-140 502.7 350 70.9
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 7.5e-130 468.0 306 74.5
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 1.3e-129 467.2 409 58.9
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 1.4e-128 463.8 341 68.6
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 9.1e-128 461.1 329 69.0
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 2.3e-123 446.4 419 56.3
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 7.5e-122 441.4 350 64.6
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 2.8e-121 439.5 334 66.8
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 2.7e-119 433.0 418 55.3
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 1.4e-115 420.6 418 53.8
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 9.5e-101 371.3 234 75.6
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 5.4e-96 355.5 243 71.2
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 1.5e-82 310.8 431 41.8
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 7.1e-72 275.4 181 72.4
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 5.3e-67 259.2 391 40.7
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 3.2e-64 250.0 235 57.0
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 9.0e-59 231.9 332 41.3
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.3e-52 211.5 189 57.1
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 3.3e-45 186.8 115 82.6
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 1.7e-41 174.5 241 45.6
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 1.7e-33 147.9 153 51.6
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 3.2e-32 143.7 153 49.0
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 1.4e-27 128.3 80 75.0
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 5.3e-27 126.3 86 68.6
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 5.3e-27 126.3 84 70.2
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 8.0e-23 112.5 91 61.5
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 8.0e-23 112.5 91 61.5
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 5.7e-21 106.3 91 60.4
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 1.8e-19 101.3 90 55.6
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 4.1e-19 100.1 74 64.9
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 4.1e-19 100.1 74 64.9
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 5.9e-18 96.3 83 57.8
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 7.7e-18 95.9 74 62.2
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 1.0e-17 95.5 183 39.3
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 7.2e-16 89.4 81 58.0
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 6.1e-15 86.3 73 56.2
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 2.0e-13 81.3 59 66.1
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 2.6e-13 80.9 66 56.1
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 4.1e-11 73.6 65 49.2
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 1.5e-08 65.1 90 43.3
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 1.9e-08 64.7 115 38.3
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 2.5e-08 64.3 115 37.4


User provided reference genes

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