Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g742 Chara braunii HOM05D002270 ORTHO05D002866 0.0e+00 3666.7 1854 100.0
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 0.0e+00 1897.9 2034 51.0
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 0.0e+00 1860.5 2036 50.2
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 0.0e+00 1653.6 1758 51.4
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 0.0e+00 1376.3 2012 41.5
COL.COLO4_30723 Corchorus olitorius HOM05D002270 ORTHO05D002866 0.0e+00 1360.5 2001 41.1
MCO14G508 Micromonas commoda HOM05D002270 ORTHO05D002866 0.0e+00 1357.4 1606 48.3
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 0.0e+00 1355.1 2020 41.6
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 0.0e+00 1350.9 2005 42.1
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 0.0e+00 1349.3 2020 39.6
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 0.0e+00 1348.6 2032 40.3
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 0.0e+00 1347.8 2005 41.6
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 0.0e+00 1340.5 2002 40.1
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 0.0e+00 1340.1 2006 41.1
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 0.0e+00 1339.3 2021 40.9
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 0.0e+00 1337.8 2013 39.6
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 0.0e+00 1336.2 2020 41.1
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 0.0e+00 1333.2 2038 40.4
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 0.0e+00 1322.4 2023 40.4
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 0.0e+00 1318.5 2014 39.8
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 0.0e+00 1317.0 2000 40.3
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 0.0e+00 1317.0 2013 40.6
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 0.0e+00 1316.6 2055 40.4
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 0.0e+00 1316.2 2024 40.0
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 0.0e+00 1312.4 2015 39.6
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 0.0e+00 1311.2 2023 40.2
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 0.0e+00 1305.8 2016 39.9
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 0.0e+00 1302.7 2018 40.0
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 0.0e+00 1301.6 2026 40.2
ECA232G4141 Erigeron canadensis HOM05D002270 ORTHO05D002866 0.0e+00 1300.4 2021 39.3
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 0.0e+00 1300.0 2017 39.3
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 0.0e+00 1298.9 2017 40.2
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 0.0e+00 1298.5 2024 39.9
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 0.0e+00 1298.1 2029 40.3
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 0.0e+00 1297.7 2083 39.9
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 0.0e+00 1295.8 2060 39.6
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 0.0e+00 1294.6 2026 40.3
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 0.0e+00 1293.9 1995 40.1
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 0.0e+00 1291.2 2008 40.5
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 0.0e+00 1286.9 2032 39.2
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 0.0e+00 1286.6 2002 39.1
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 0.0e+00 1283.5 2027 39.0
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 0.0e+00 1282.3 2012 39.7
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 0.0e+00 1281.9 1834 41.3
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 0.0e+00 1280.0 2029 39.8
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 0.0e+00 1278.5 1986 39.6
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 0.0e+00 1273.5 2003 39.9
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 0.0e+00 1271.9 2021 39.7
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 0.0e+00 1271.9 1813 41.4
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 0.0e+00 1270.0 2022 39.6
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 0.0e+00 1268.8 2031 39.6
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 0.0e+00 1263.1 1782 42.5
Cre03.g161800 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 0.0e+00 1260.4 2299 38.5
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 0.0e+00 1259.6 1643 44.9
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 0.0e+00 1254.2 1950 40.1
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 0.0e+00 1252.3 2005 40.0
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 0.0e+00 1250.7 2021 40.1
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 0.0e+00 1248.8 2047 38.6
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 0.0e+00 1248.0 2032 39.6
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 0.0e+00 1241.9 2002 39.2
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 0.0e+00 1240.3 1934 39.8
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 0.0e+00 1238.4 2040 38.3
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 0.0e+00 1236.9 2227 36.2
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 0.0e+00 1234.6 1973 39.3
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 0.0e+00 1232.2 2027 38.2
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 0.0e+00 1231.5 2052 38.5
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 0.0e+00 1218.4 2001 38.7
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 0.0e+00 1218.4 1824 40.4
PRCOL_00003697 Prasinoderma coloniale HOM05D002270 ORTHO05D002866 0.0e+00 1218.0 2060 39.4
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 0.0e+00 1215.3 2029 37.9
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 0.0e+00 1212.6 1594 44.4
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 0.0e+00 1211.1 1613 44.1
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 0.0e+00 1210.7 2002 38.8
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 0.0e+00 1209.9 2047 37.6
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 0.0e+00 1208.4 1998 38.1
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 0.0e+00 1207.2 2008 37.9
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 0.0e+00 1204.9 2003 38.9
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 0.0e+00 1203.3 2018 38.3
arahy.Tifrunner.gnm1.ann1.VXKY2I Arachis hypogaea HOM05D002270 ORTHO05D002866 0.0e+00 1203.0 2002 38.2
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 0.0e+00 1201.8 1996 38.0
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 0.0e+00 1199.5 2003 38.8
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 0.0e+00 1197.6 1892 39.4
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 0.0e+00 1196.0 2006 38.7
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 0.0e+00 1192.6 2045 37.2
SEGI_27232 Sequoiadendron giganteum HOM05D002270 ORTHO05D000001 0.0e+00 1185.2 1305 50.2
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 0.0e+00 1176.4 1965 38.5
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 0.0e+00 1166.8 2046 38.0
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 0.0e+00 1146.3 1647 42.7
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 0.0e+00 1142.9 1731 40.6
TAR636G1163 Trochodendron aralioides HOM05D002270 ORTHO05D002866 0.0e+00 1142.9 1785 39.6
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 0.0e+00 1117.4 1469 45.0
Hund05751 Selenicereus undatus HOM05D002270 ORTHO05D002866 0.0e+00 1092.4 1775 38.9
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 0.0e+00 1088.9 1369 46.5
COL.COLO4_12568 Corchorus olitorius HOM05D002270 ORTHO05D002866 0.0e+00 1087.8 1474 44.1
TPR.G9777 Trifolium pratense HOM05D002270 ORTHO05D002866 2.5e-311 1072.8 2062 35.9
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 1.6e-293 1013.8 2080 34.5
VMungo0464G0518 Vigna mungo HOM05D002270 ORTHO05D002866 2.4e-292 1010.0 1309 46.1
SMO141G0091 Selaginella moellendorffii HOM05D002270 ORTHO05D002866 2.3e-287 993.4 1015 52.1
Ah.08g216540 Amaranthus hybridus HOM05D002270 ORTHO05D002866 2.7e-272 943.3 1990 35.2
Oeu047969.1 Olea europaea HOM05D002270 ORTHO05D002866 5.3e-260 902.5 2181 32.2
Lsat_1_v5_gn_7_1960 Lactuca sativa HOM05D002270 ORTHO05D002866 7.0e-244 849.0 1405 37.7
ATR0736G169 Amborella trichopoda HOM05D002270 ORTHO05D002866 1.8e-239 834.3 1142 43.0
SHI16813 Sapria himalayana HOM05D002270 ORTHO05D002866 3.9e-234 816.6 1234 40.7
Lalb_Chr20g0113901 Lupinus albus HOM05D002270 ORTHO05D002866 1.1e-233 815.1 1232 40.8
TPR.G29953 Trifolium pratense HOM05D002270 ORTHO05D002866 5.6e-225 786.2 1766 33.1
CDE12G0416 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 1.7e-221 774.6 1100 41.2
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 2.5e-209 734.2 844 49.1
VMungo0331G1745 Vigna mungo HOM05D000103 ORTHO05D000049 2.4e-183 647.9 1128 36.3
Cpa.g.sc30.12 Carica papaya HOM05D002270 ORTHO05D002866 1.2e-182 645.6 828 45.5
arahy.Tifrunner.gnm1.ann1.I4EX6M Arachis hypogaea HOM05D002270 ORTHO05D002866 4.7e-155 553.9 614 50.2
SEGI_24765 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 4.5e-142 510.8 442 58.6
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 4.4e-129 467.6 520 49.2
vmacro22217 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 7.5e-121 440.3 481 49.3
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 9.2e-119 433.3 455 50.8
Nitab4.5_0003025g0040 Nicotiana tabacum HOM05D002270 ORTHO05D002866 4.7e-115 421.0 661 36.9
C02p22540 Brassica napus HOM05D002270 ORTHO05D002866 1.2e-110 406.4 390 58.2
Nitab4.5_0003025g0020 Nicotiana tabacum HOM05D002270 ORTHO05D002866 2.4e-103 382.1 488 44.3
GSVIVG01012486001 Vitis vinifera HOM05D002270 ORTHO05D002866 1.1e-92 346.7 895 31.7
BolC2t08408H Brassica oleracea HOM05D002270 ORTHO05D002866 3.2e-87 328.6 221 73.3
VMungo1383G2297 Vigna mungo HOM05D002270 ORTHO05D002866 3.5e-86 325.1 764 33.5
vmacro22219 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 1.1e-82 313.5 757 31.0
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 1.7e-72 279.6 283 53.4
ATR0736G170 Amborella trichopoda HOM05D002270 ORTHO05D002866 3.4e-65 255.4 484 33.5
CDE12G0087 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 1.0e-64 253.8 368 41.0
C02p22530 Brassica napus HOM05D002270 ORTHO05D002866 4.9e-64 251.5 210 55.7
TPR.G29949 Trifolium pratense HOM05D002270 ORTHO05D002866 2.3e-61 242.7 265 53.6
TAR636G1846 Trochodendron aralioides HOM05D002270 ORTHO05D002866 1.9e-55 223.0 152 74.3
VMungo0331G1298 Vigna mungo HOM05D002270 ORTHO05D002866 6.1e-54 218.0 154 72.7
BolC2t08407H Brassica oleracea HOM05D002270 ORTHO05D002866 3.3e-52 212.2 169 57.4
AagrBONN_evm.TU.Sc2ySwM_117.1506 Anthoceros agrestis HOM05D002270 ORTHO05D002866 1.8e-50 206.5 322 37.9
BcaC05g27865 Brassica carinata HOM05D001285 ORTHO05D000199 5.3e-50 204.9 382 33.2
Sp5g22070 Schrenkiella parvula HOM05D002270 ORTHO05D002866 2.0e-49 203.0 564 27.7
Hund05750 Selenicereus undatus HOM05D002270 ORTHO05D002866 2.6e-49 202.6 216 54.6
Cpa.g.sc30.16 Carica papaya HOM05D002270 ORTHO05D002866 1.9e-47 196.4 316 34.2
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 3.2e-47 195.7 132 74.2
Cpa.g.sc30.11 Carica papaya HOM05D002270 ORTHO05D002866 3.2e-47 195.7 240 43.3
AagrBONN_evm.TU.Sc2ySwM_117.1507 Anthoceros agrestis HOM05D002270 ORTHO05D002866 5.1e-45 188.3 254 37.8
Sp5g22060 Schrenkiella parvula HOM05D002270 ORTHO05D002866 1.1e-44 187.2 330 36.7
TPR.G36181 Trifolium pratense HOM05D002270 ORTHO05D002866 1.1e-42 180.6 289 36.0
Cpa.g.sc30.10 Carica papaya HOM05D002270 ORTHO05D002866 3.8e-40 172.2 152 60.5
C05p38660 Brassica napus HOM05D002270 ORTHO05D002866 2.5e-39 169.5 366 32.2
SEGI_23610 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 1.4e-34 153.7 272 32.7
Psat3g019920 Pisum sativum HOM05D002270 ORTHO05D002866 4.2e-31 142.1 94 76.6
Lsat_1_v5_gn_7_1981 Lactuca sativa HOM05D002270 ORTHO05D002866 2.7e-30 139.4 449 25.6
Cre02.g095550 Chlamydomonas reinhardtii HOM05D053512 ORTHO05D012763 2.4e-26 126.3 443 28.2
Cre02.g095250 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 3.1e-26 125.9 447 28.4
Psat4g187880 Pisum sativum HOM05D002270 ORTHO05D002866 7.0e-26 124.8 129 48.1
Nitab4.5_0000433g0190 Nicotiana tabacum HOM05D002270 ORTHO05D002866 4.2e-23 115.5 429 25.4
Solyc04g072270.1 Solanum lycopersicum HOM05D002270 ORTHO05D002866 3.6e-22 112.5 427 23.7
BcaC03g14803 Brassica carinata HOM05D002270 ORTHO05D002866 8.0e-22 111.3 304 28.6
C02p22550 Brassica napus HOM05D002270 ORTHO05D002866 8.0e-22 111.3 154 39.6
VMungo0464G1016 Vigna mungo HOM05D002270 ORTHO05D002866 3.0e-21 109.4 120 43.3
Lalb_Chr20g0113891 Lupinus albus HOM05D002270 ORTHO05D002866 2.6e-20 106.3 87 56.3
Nn8g39133 Nelumbo nucifera HOM05D002270 ORTHO05D002866 4.4e-20 105.5 242 32.6
Nn8g39147 Nelumbo nucifera HOM05D002270 ORTHO05D002866 4.4e-20 105.5 242 32.6
Peaxi162Scf00226g00824 Petunia axillaris HOM05D002270 ORTHO05D002866 6.3e-19 101.7 415 23.1
TPR.G23043 Trifolium pratense HOM05D002270 ORTHO05D002866 2.0e-17 96.7 79 53.2
COL.COLO4_12569 Corchorus olitorius HOM05D002270 ORTHO05D002866 4.5e-17 95.5 409 23.5
Os10g0456950 Oryza sativa ssp. japonica HOM05D002270 ORTHO05D002866 1.0e-16 94.4 292 26.7
QL01p053604 Quercus lobata HOM05D002270 ORTHO05D002866 1.0e-16 94.4 436 26.1
Cc11_g02690 Coffea canephora HOM05D002270 ORTHO05D002866 1.3e-16 94.0 90 47.8
SHI16815 Sapria himalayana HOM05D002270 ORTHO05D002866 2.3e-16 93.2 92 52.2
Nitab4.5_0003025g0030 Nicotiana tabacum HOM05D002270 ORTHO05D002866 5.0e-16 92.0 306 27.1
SEGI_35812 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 1.5e-15 90.5 207 28.5
QL01p054873 Quercus lobata HOM05D002270 ORTHO05D002866 1.9e-15 90.1 85 49.4
QL01p053642 Quercus lobata HOM05D002270 ORTHO05D002866 4.0e-13 82.4 383 25.6
QL93p0381_0021 Quercus lobata HOM05D002270 ORTHO05D002866 1.4e-10 73.9 168 31.0
Psat0s3488g0080 Pisum sativum HOM05D002270 ORTHO05D030496 2.4e-10 73.2 73 54.8
Cc02_g21460 Coffea canephora HOM05D002270 ORTHO05D002866 4.5e-09 68.9 63 46.0
Lalb_Chr20g0113881 Lupinus albus HOM05D002270 ORTHO05D002866 4.5e-09 68.9 207 27.1
Psat0s3488g0040 Pisum sativum HOM05D002270 ORTHO05D030496 5.9e-09 68.6 53 62.3
SEGI_12162 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 7.8e-09 68.2 95 38.9
SHI16816 Sapria himalayana HOM05D002270 ORTHO05D002866 1.0e-08 67.8 121 33.9
vmacro22218 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 8.6e-08 64.7 32 87.5
arahy.Tifrunner.gnm1.ann1.X0CJR3 Arachis hypogaea HOM05D000682 ORTHO05D000510 1.5e-07 63.9 41 70.7
SEGI_39038 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 1.5e-07 63.9 166 31.9
ECA232G3855 Erigeron canadensis HOM05D002270 ORTHO05D002866 9.5e-07 61.2 412 21.8


User provided reference genes

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