Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g61479 Chara braunii HOM05D005861 ORTHO05D007151 0.0e+00 1192.6 616 100.0
AagrBONN_evm.TU.Sc2ySwM_344.4889 Anthoceros agrestis HOM05D005861 ORTHO05D007151 1.0e-114 418.3 413 49.2
Pp3c8_21700 Physcomitrium patens HOM05D005861 ORTHO05D007151 2.1e-112 410.6 409 48.2
Mapoly0003s0096 Marchantia polymorpha HOM05D005861 ORTHO05D007151 2.4e-108 397.1 410 47.1
Aqoxy3G04101 Aquilegia oxysepala HOM05D005861 ORTHO05D007151 1.6e-107 394.4 420 47.1
Sed0025210 Sechium edule HOM05D005861 ORTHO05D007151 9.5e-105 385.2 432 44.4
GSVIVG01012161001 Vitis vinifera HOM05D005861 ORTHO05D007151 9.5e-105 385.2 452 44.7
Cfa001144 Carpinus fangiana HOM05D005861 ORTHO05D007151 2.1e-104 384.0 452 43.4
Potri.003G155100 Populus trichocarpa HOM05D005861 ORTHO05D007151 2.8e-104 383.6 409 46.5
TPR.G26579 Trifolium pratense HOM05D005861 ORTHO05D007151 2.8e-104 383.6 425 45.9
Ciclev10015087m.g Citrus clementina HOM05D005861 ORTHO05D007151 6.2e-104 382.5 453 43.7
Lalb_Chr18g0052021 Lupinus albus HOM05D005861 ORTHO05D007151 6.2e-104 382.5 422 45.7
Manes.03G071200 Manihot esculenta HOM05D005861 ORTHO05D007151 1.4e-103 381.3 444 43.5
Medtr2g035660 Medicago truncatula HOM05D005861 ORTHO05D007151 1.4e-103 381.3 458 44.1
PSO063G0366 Papaver somniferum HOM05D005861 ORTHO05D007151 1.4e-103 381.3 445 45.2
QL11p011864 Quercus lobata HOM05D005861 ORTHO05D007151 4.0e-103 379.8 408 46.3
QL93p0142_0007 Quercus lobata HOM05D005861 ORTHO05D007151 4.0e-103 379.8 408 46.3
Glyma.15G156500 Glycine max HOM05D005861 ORTHO05D007151 5.2e-103 379.4 444 43.9
MSTRG.18594 Avicennia marina HOM05D005861 ORTHO05D007151 8.9e-103 378.6 425 44.9
MD10G1226200 Malus domestica HOM05D005861 ORTHO05D007151 8.9e-103 378.6 453 43.7
PSO782G3554 Papaver somniferum HOM05D005861 ORTHO05D007151 8.9e-103 378.6 469 44.1
Dinv05874 Davidia involucrata HOM05D005861 ORTHO05D007151 1.5e-102 377.9 409 45.7
THA.LOC104811881 Tarenaya hassleriana HOM05D005861 ORTHO05D007151 2.6e-102 377.1 409 46.2
TWI38G1305 Tripterygium wilfordii HOM05D005861 ORTHO05D007151 2.6e-102 377.1 420 44.3
Gorai.009G012700 Gossypium raimondii HOM05D005861 ORTHO05D007151 4.4e-102 376.3 452 43.4
CSS0003156 Camellia sinensis var. sinensis HOM05D005861 ORTHO05D007151 5.8e-102 375.9 464 42.5
Phvul.009G243500 Phaseolus vulgaris HOM05D005861 ORTHO05D007151 5.8e-102 375.9 427 44.5
TAR636G0982 Trochodendron aralioides HOM05D005861 ORTHO05D007151 5.8e-102 375.9 445 43.6
Cc09_g01980 Coffea canephora HOM05D005861 ORTHO05D007151 7.5e-102 375.6 452 43.1
Sc24g0002940 Simmondsia chinensis HOM05D005861 ORTHO05D007151 9.8e-102 375.2 415 45.5
RcHm_v2.0_Chr5g0021381 Rosa chinensis HOM05D005861 ORTHO05D007151 1.7e-101 374.4 431 45.0
arahy.Tifrunner.gnm1.ann1.MH4CM1 Arachis hypogaea HOM05D005861 ORTHO05D007151 2.2e-101 374.0 444 43.5
Nn7g38377 Nelumbo nucifera HOM05D005861 ORTHO05D007151 2.2e-101 374.0 469 42.9
Prupe.4G119100 Prunus persica HOM05D005861 ORTHO05D007151 2.2e-101 374.0 452 42.7
CAN.G809.40 Capsicum annuum HOM05D005861 ORTHO05D007151 4.9e-101 372.9 410 45.6
Glyma.09G049800 Glycine max HOM05D005861 ORTHO05D007151 4.9e-101 372.9 444 43.7
VMungo1309G1344 Vigna mungo HOM05D005861 ORTHO05D007151 6.4e-101 372.5 443 43.3
Lj6g0026320 Lotus japonicus HOM05D005861 ORTHO05D007151 1.1e-100 371.7 445 43.8
SGA_v2.0_scaffold298G47711 Striga asiatica HOM05D005861 ORTHO05D007151 1.1e-100 371.7 425 43.8
FvH4_3g13130 Fragaria vesca HOM05D005861 ORTHO05D007151 1.4e-100 371.3 452 43.1
MELO3C002396.2 Cucumis melo HOM05D005861 ORTHO05D007151 1.9e-100 370.9 434 44.0
PGR004G1814 Punica granatum HOM05D005861 ORTHO05D007151 4.1e-100 369.8 398 46.7
ClCG03G004130 Citrullus lanatus HOM05D005861 ORTHO05D007151 5.4e-100 369.4 432 43.3
Solyc02g081920.3 Solanum lycopersicum HOM05D005861 ORTHO05D007151 5.4e-100 369.4 409 44.7
Atru.chr10.266 Acer truncatum HOM05D005861 ORTHO05D007151 7.1e-100 369.0 454 43.2
CsaV3_1G010060 Cucumis sativus L. HOM05D005861 ORTHO05D007151 7.1e-100 369.0 431 43.9
Migut.M02023 Erythranthe guttata HOM05D005861 ORTHO05D007151 7.1e-100 369.0 425 44.0
Thecc.09G140900 Theobroma cacao HOM05D005861 ORTHO05D007151 1.2e-99 368.2 451 42.6
Sopen02g026550 Solanum pennellii HOM05D005861 ORTHO05D007151 1.6e-99 367.9 409 44.7
Gohir.A05G011700 Gossypium hirsutum HOM05D005861 ORTHO05D007151 2.1e-99 367.5 425 44.2
Peaxi162Scf00036g00158 Petunia axillaris HOM05D005861 ORTHO05D007151 4.6e-99 366.3 409 45.0
Migut.O00467 Erythranthe guttata HOM05D005861 ORTHO05D007151 7.8e-99 365.5 425 43.8
Eucgr.D00007 Eucalyptus grandis HOM05D005861 ORTHO05D007151 7.8e-99 365.5 439 42.8
Aa31LG6G2540 Aethionema arabicum HOM05D005861 ORTHO05D007151 3.0e-98 363.6 428 44.2
Carub.0007s2100 Capsella rubella HOM05D005861 ORTHO05D007151 6.6e-98 362.5 409 44.5
PGSC0003DMG401007333 Solanum tuberosum HOM05D005861 ORTHO05D007151 1.5e-97 361.3 481 40.7
FAN16G2684 Fragaria x ananassa HOM05D005861 ORTHO05D007151 4.3e-97 359.8 496 39.9
FAN21G1611 Fragaria x ananassa HOM05D005861 ORTHO05D007151 4.3e-97 359.8 479 40.7
AL7G33690 Arabidopsis lyrata HOM05D005861 ORTHO05D007151 5.6e-97 359.4 409 44.5
AT4G20130 Arabidopsis thaliana HOM05D005861 ORTHO05D007151 5.6e-97 359.4 409 44.5
Psat1g150560 Pisum sativum HOM05D005861 ORTHO05D007151 5.6e-97 359.4 409 44.3
CARHR226960 Cardamine hirsuta HOM05D005861 ORTHO05D007151 7.3e-97 359.0 409 44.3
Sp7g18560 Schrenkiella parvula HOM05D005861 ORTHO05D007151 7.3e-97 359.0 409 44.7
Haze_05240 Corylus avellana HOM05D005861 ORTHO05D007151 9.5e-97 358.6 509 39.1
BcaB03g11658 Brassica carinata HOM05D005861 ORTHO05D007151 2.8e-96 357.1 409 44.5
BcaC01g00656 Brassica carinata HOM05D005861 ORTHO05D007151 4.7e-96 356.3 443 42.7
A08p14640 Brassica napus HOM05D005861 ORTHO05D007151 4.7e-96 356.3 443 42.4
BraA08t33451Z Brassica rapa HOM05D005861 ORTHO05D007151 4.7e-96 356.3 443 42.4
C03p82790 Brassica napus HOM05D005861 ORTHO05D007151 8.1e-96 355.5 443 42.7
BolC3t20561H Brassica oleracea HOM05D005861 ORTHO05D007151 8.1e-96 355.5 443 42.7
EL10Ac3g07109 Beta vulgaris HOM05D005861 ORTHO05D007151 4.0e-95 353.2 366 47.5
Oeu008732.1 Olea europaea HOM05D005861 ORTHO05D007151 1.2e-94 351.7 401 44.6
ECA236G3447 Erigeron canadensis HOM05D005861 ORTHO05D007151 3.4e-94 350.1 462 38.7
HanXRQChr04g0116561 Helianthus annuus HOM05D005861 ORTHO05D007151 3.4e-94 350.1 410 41.5
SMO331G0022 Selaginella moellendorffii HOM05D005861 ORTHO05D007151 7.6e-94 349.0 429 41.3
Nitab4.5_0000844g0330 Nicotiana tabacum HOM05D005861 ORTHO05D007151 1.7e-93 347.8 478 40.2
arahy.Tifrunner.gnm1.ann1.RN3XR3 Arachis hypogaea HOM05D005861 ORTHO05D007151 2.9e-93 347.1 444 41.9
Gohir.D05G012400 Gossypium hirsutum HOM05D005861 ORTHO05D007151 1.9e-92 344.4 367 46.3
Zm00001eb345040 Zea mays HOM05D005861 ORTHO05D007151 1.9e-92 344.4 372 46.5
Thhalv10027180m.g Eutrema salsugineum HOM05D005861 ORTHO05D007151 2.4e-92 344.0 409 43.8
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 7.1e-92 342.4 387 44.7
Nitab4.5_0000632g0140 Nicotiana tabacum HOM05D005861 ORTHO05D007151 3.5e-91 340.1 409 43.0
TWI63G1685 Tripterygium wilfordii HOM05D005861 ORTHO05D007151 1.3e-90 338.2 467 40.0
unitig_37.g12046 Utricularia gibba HOM05D005861 ORTHO05D007151 2.4e-87 327.4 409 41.8
vmacro03562 Vaccinium macrocarpon HOM05D005861 ORTHO05D007151 5.2e-87 326.2 547 35.1
FAN25G2772 Fragaria x ananassa HOM05D005861 ORTHO05D007151 8.9e-87 325.5 486 38.1
CiPaw.09G138900 Carya illinoinensis HOM05D005861 ORTHO05D007151 8.4e-85 318.9 458 38.2
CDE02G4422 Ceratophyllum demersum HOM05D005861 ORTHO05D007151 2.4e-84 317.4 346 45.4
AUR62039890 Chenopodium quinoa HOM05D005861 ORTHO05D007151 3.1e-79 300.4 369 43.1
AUR62040329 Chenopodium quinoa HOM05D005861 ORTHO05D007151 1.2e-78 298.5 366 43.4
Gohir.D05G012700 Gossypium hirsutum HOM05D005861 ORTHO05D007151 1.9e-76 291.2 343 44.0
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 1.2e-75 288.5 300 46.0
Duzib168G0529 Durio zibethinus HOM05D005861 ORTHO05D007151 1.9e-73 281.2 452 35.6
Cpa.g.sc30.93 Carica papaya HOM05D005861 ORTHO05D007151 4.3e-73 280.0 432 36.8
Ah.08g212320 Amaranthus hybridus HOM05D005861 ORTHO05D007151 4.5e-70 270.0 411 37.0
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 4.5e-70 270.0 301 41.9
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 4.3e-65 253.4 529 32.5
HPP92_009503 Vanilla planifolia HOM05D005861 ORTHO05D007151 5.5e-52 209.9 236 43.6
COL.COLO4_24113 Corchorus olitorius HOM05D005861 ORTHO05D003578 2.8e-48 197.6 384 31.8
Ca_01979_v3 Cicer arietinum L. HOM05D005861 ORTHO05D007151 6.3e-48 196.4 223 43.9
Gorai.N022300 Gossypium raimondii HOM05D005861 ORTHO05D007151 1.1e-47 195.7 279 39.4
A04p29830 Brassica napus HOM05D005861 ORTHO05D007151 1.0e-37 162.5 288 33.7
Hund25553 Selenicereus undatus HOM05D005861 ORTHO05D007151 3.2e-36 157.5 295 33.2
Lj1g0026190 Lotus japonicus HOM05D005861 ORTHO05D007151 1.6e-35 155.2 241 36.5
Ca_28373_v3 Cicer arietinum L. HOM05D005861 ORTHO05D007151 2.0e-33 148.3 147 50.3
BraA04t18443Z Brassica rapa HOM05D005861 ORTHO05D007151 4.4e-33 147.1 273 33.7
Cfa001273 Carpinus fangiana HOM05D005861 ORTHO05D007151 1.0e-29 136.0 216 39.4
QL93p2001_0005 Quercus lobata HOM05D005861 ORTHO05D007151 1.0e-29 136.0 166 40.4
RcHm_v2.0_Chr5g0063511 Rosa chinensis HOM05D005861 ORTHO05D007151 1.0e-29 136.0 111 59.5
VMungo0344G0001 Vigna mungo HOM05D005861 ORTHO05D007151 1.3e-24 119.0 151 41.1
VMungo1383G1601 Vigna mungo HOM05D005861 ORTHO05D007151 6.3e-24 116.7 127 44.1
Lj4g0007893 Lotus japonicus HOM05D005861 ORTHO05D007151 8.5e-21 106.3 90 55.6
MD05G1244800 Malus domestica HOM05D005861 ORTHO05D007151 2.5e-20 104.8 97 45.4
HPP92_009502 Vanilla planifolia HOM05D005861 ORTHO05D007151 4.2e-20 104.0 104 47.1
Lj3g0008154 Lotus japonicus HOM05D005861 ORTHO05D007151 3.6e-19 100.9 90 53.3
Os05g0587200 Oryza sativa ssp. japonica HOM05D005861 ORTHO05D007151 3.4e-17 94.4 95 48.4
RcHm_v2.0_Chr3g0456081 Rosa chinensis HOM05D005861 ORTHO05D007151 2.8e-16 91.3 90 51.1
Lj6g0014924 Lotus japonicus HOM05D005861 ORTHO05D007151 7.0e-15 86.7 107 41.1
Duzib187G1938 Durio zibethinus HOM05D005861 ORTHO05D007151 1.2e-14 85.9 95 45.3
Cre16.g649700 Chlamydomonas reinhardtii HOM05D005861 ORTHO05D007151 2.0e-14 85.1 187 31.0
Lj1g0019510 Lotus japonicus HOM05D005861 ORTHO05D007151 3.5e-14 84.3 64 56.2
SMO356G0148 Selaginella moellendorffii HOM05D005416 ORTHO05D007956 3.8e-13 80.9 429 23.8
Migut.E00473 Erythranthe guttata HOM05D005416 ORTHO05D007956 5.0e-13 80.5 430 25.1
Oeu044016.1 Olea europaea HOM05D005416 ORTHO05D007956 1.5e-12 79.0 429 24.5
CANSAT01G1131 Cannabis sativa HOM05D005416 ORTHO05D007956 1.9e-12 78.6 435 23.0
PGSC0003DMG400012780 Solanum tuberosum HOM05D005861 ORTHO05D007151 1.9e-12 78.6 123 39.0
PGR102G2697 Punica granatum HOM05D005416 ORTHO05D007956 9.5e-12 76.3 440 22.7
TAR371G0369 Trochodendron aralioides HOM05D005416 ORTHO05D007956 9.5e-12 76.3 437 24.0
CAN.G36.1 Capsicum annuum HOM05D005416 ORTHO05D007956 1.6e-11 75.5 423 24.1
Sabra08G0102700 Salix brachista HOM05D005416 ORTHO05D007956 2.1e-11 75.1 436 22.0
CSS0013875 Camellia sinensis var. sinensis HOM05D005416 ORTHO05D007956 6.1e-11 73.6 409 23.2
A09p38980 Brassica napus HOM05D005416 ORTHO05D007956 1.4e-10 72.4 284 25.7
Eucgr.B02671 Eucalyptus grandis HOM05D005416 ORTHO05D007956 1.8e-10 72.0 441 25.2
TAR371G0290 Trochodendron aralioides HOM05D005416 ORTHO05D007956 1.8e-10 72.0 434 24.0
Ciclev10015103m.g Citrus clementina HOM05D005416 ORTHO05D007956 3.0e-10 71.2 433 22.2
Hund24928 Selenicereus undatus HOM05D005416 ORTHO05D007956 4.0e-10 70.9 425 22.8
CSS0046016 Camellia sinensis var. sinensis HOM05D005416 ORTHO05D007956 6.8e-10 70.1 413 23.7
Peaxi162Scf00655g00217 Petunia axillaris HOM05D005416 ORTHO05D007956 6.8e-10 70.1 421 24.2
BcaC05g26700 Brassica carinata HOM05D005416 ORTHO05D007956 1.5e-09 68.9 344 24.1
Potri.008G134200 Populus trichocarpa HOM05D005416 ORTHO05D007956 1.5e-09 68.9 445 20.4
Mapoly0108s0064 Marchantia polymorpha HOM05D005416 ORTHO05D007956 2.0e-09 68.6 267 25.8
Nitab4.5_0000198g0220 Nicotiana tabacum HOM05D005416 ORTHO05D007956 2.0e-09 68.6 428 23.8
GSVIVG01011666001 Vitis vinifera HOM05D005416 ORTHO05D007956 2.6e-09 68.2 421 22.8
BraA09t39401Z Brassica rapa HOM05D005416 ORTHO05D007956 4.4e-09 67.4 447 23.3
MD13G1020900 Malus domestica HOM05D005416 ORTHO05D007956 4.4e-09 67.4 277 24.9
Ah.11g040820 Amaranthus hybridus HOM05D005861 ORTHO05D007151 5.7e-09 67.0 79 39.2
Cre03.g201332 Chlamydomonas reinhardtii HOM05D005861 ORTHO05D007151 5.7e-09 67.0 216 29.2
Actinidia36630 Actinidia chinensis HOM05D005416 ORTHO05D007956 7.5e-09 66.6 470 22.8
Duzib251G0900 Durio zibethinus HOM05D005416 ORTHO05D007956 7.5e-09 66.6 425 21.6
HanXRQChr12g0362651 Helianthus annuus HOM05D005416 ORTHO05D007956 7.5e-09 66.6 358 23.2
THA.LOC104825565 Tarenaya hassleriana HOM05D005416 ORTHO05D007956 7.5e-09 66.6 434 23.0
Nitab4.5_0000922g0060 Nicotiana tabacum HOM05D005416 ORTHO05D007956 9.8e-09 66.2 430 23.5
Lj3C865G4 Lonicera japonica HOM05D005416 ORTHO05D007956 1.3e-08 65.9 356 23.6
vmacro23117 Vaccinium macrocarpon HOM05D005416 ORTHO05D007956 1.3e-08 65.9 382 23.3
AUR62014156 Chenopodium quinoa HOM05D005416 ORTHO05D007956 1.7e-08 65.5 383 21.9
AUR62038467 Chenopodium quinoa HOM05D005416 ORTHO05D007956 1.7e-08 65.5 377 22.3
A03p17620 Brassica napus HOM05D005861 ORTHO05D007151 2.8e-08 64.7 48 60.4
Gohir.A12G151900 Gossypium hirsutum HOM05D005416 ORTHO05D007956 2.8e-08 64.7 425 21.9
ECA233G0392 Erigeron canadensis HOM05D005416 ORTHO05D007956 3.7e-08 64.3 255 25.9
MD16G1019300 Malus domestica HOM05D005416 ORTHO05D007956 6.3e-08 63.5 277 24.9
CiPaw.06G051400 Carya illinoinensis HOM05D005416 ORTHO05D007956 8.3e-08 63.2 424 22.9
Atru.chr11.944 Acer truncatum HOM05D005416 ORTHO05D007956 1.1e-07 62.8 433 21.5
Rhsim09G0090200 Rhododendron simsii HOM05D005416 ORTHO05D007956 1.4e-07 62.4 361 22.7
PSO478G1161 Papaver somniferum HOM05D005416 ORTHO05D007956 2.4e-07 61.6 446 20.6
DCAR_030261 Daucus carota HOM05D005416 ORTHO05D007956 3.1e-07 61.2 205 26.3
Prupe.1G332800 Prunus persica HOM05D005416 ORTHO05D007956 3.1e-07 61.2 255 25.9
CARHR026460 Cardamine hirsuta HOM05D005416 ORTHO05D007956 4.1e-07 60.8 373 22.5
AL1G40300 Arabidopsis lyrata HOM05D005416 ORTHO05D007956 5.4e-07 60.5 405 22.2
Nn3g18354 Nelumbo nucifera HOM05D005416 ORTHO05D007956 5.4e-07 60.5 432 22.9
Dinv07734 Davidia involucrata HOM05D005416 ORTHO05D007956 7.0e-07 60.1 259 25.9
QL03p035642 Quercus lobata HOM05D005416 ORTHO05D007956 7.0e-07 60.1 251 24.3
Thhalv10007532m.g Eutrema salsugineum HOM05D005416 ORTHO05D007956 9.2e-07 59.7 234 26.5
RcHm_v2.0_Chr4g0443121 Rosa chinensis HOM05D005416 ORTHO05D007956 1.2e-06 59.3 276 24.6
ATR0753G010 Amborella trichopoda HOM05D005416 ORTHO05D007956 1.6e-06 58.9 363 22.3
Haze_10889 Corylus avellana HOM05D005416 ORTHO05D007956 1.6e-06 58.9 355 24.2
Sc14g0006920 Simmondsia chinensis HOM05D005416 ORTHO05D007956 1.6e-06 58.9 252 26.6
FAN12G4277 Fragaria x ananassa HOM05D005416 ORTHO05D007956 4.5e-06 57.4 277 25.3
Lj1g0009858 Lotus japonicus HOM05D005861 ORTHO05D007151 5.9e-06 57.0 65 43.1
MCO07G533 Micromonas commoda HOM05D005861 ORTHO05D007151 7.8e-06 56.6 274 23.7


User provided reference genes

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