Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g57069 Chara braunii HOM05D003444 ORTHO05D003963 1.0e-213 746.9 508 100.0
CBR_g23963 Chara braunii HOM05D003444 ORTHO05D003963 1.3e-62 245.0 409 43.5
Mapoly0061s0094 Marchantia polymorpha HOM05D003444 ORTHO05D003963 1.1e-53 215.3 334 40.1
Pp3c8_10480 Physcomitrium patens HOM05D003444 ORTHO05D003963 4.5e-52 209.9 344 40.7
AagrBONN_evm.TU.Sc2ySwM_362.1384 Anthoceros agrestis HOM05D003444 ORTHO05D003963 7.2e-50 202.6 334 39.2
SMO270G0025 Selaginella moellendorffii HOM05D003444 ORTHO05D003963 1.0e-48 198.7 331 39.6
Manes.14G062700 Manihot esculenta HOM05D003444 ORTHO05D003963 4.9e-38 163.3 328 34.5
Dinv38555 Davidia involucrata HOM05D003444 ORTHO05D003963 1.4e-37 161.8 342 34.8
GSVIVG01007683001 Vitis vinifera HOM05D003444 ORTHO05D003963 1.8e-37 161.4 338 34.3
BcaB02g07746 Brassica carinata HOM05D003444 ORTHO05D003963 4.1e-37 160.2 378 32.0
Hund09457 Selenicereus undatus HOM05D003444 ORTHO05D003963 2.7e-36 157.5 345 32.5
MBI10_g32035_MAGBIO Magnolia biondii HOM05D003444 ORTHO05D003963 3.5e-36 157.1 336 32.7
A07p22020 Brassica napus HOM05D003444 ORTHO05D003963 4.5e-36 156.8 348 32.8
BraA07t29885Z Brassica rapa HOM05D003444 ORTHO05D003963 4.5e-36 156.8 347 31.7
FvH4_5g05840 Fragaria vesca HOM05D003444 ORTHO05D003963 4.5e-36 156.8 346 34.4
FAN04G2640 Fragaria x ananassa HOM05D003444 ORTHO05D003963 4.5e-36 156.8 346 34.7
FAN18G3108 Fragaria x ananassa HOM05D003444 ORTHO05D003963 4.5e-36 156.8 346 34.4
Actinidia19346 Actinidia chinensis HOM05D003444 ORTHO05D003963 1.0e-35 155.6 331 34.4
C06p22000 Brassica napus HOM05D003444 ORTHO05D003963 1.0e-35 155.6 347 32.6
BolC6t37388H Brassica oleracea HOM05D003444 ORTHO05D003963 1.0e-35 155.6 347 32.6
Manes.06G108200 Manihot esculenta HOM05D003444 ORTHO05D003963 1.0e-35 155.6 334 35.0
Gohir.A07G063100 Gossypium hirsutum HOM05D003444 ORTHO05D003963 1.3e-35 155.2 333 33.6
CANSAT80G2021 Cannabis sativa HOM05D003444 ORTHO05D003963 2.3e-35 154.5 361 31.3
Sc12g0005160 Simmondsia chinensis HOM05D003444 ORTHO05D003963 2.3e-35 154.5 364 32.4
Thecc.03G023900 Theobroma cacao HOM05D003444 ORTHO05D003963 2.3e-35 154.5 362 32.3
Eucgr.B03880 Eucalyptus grandis HOM05D003444 ORTHO05D003963 2.9e-35 154.1 331 34.1
RcHm_v2.0_Chr7g0192981 Rosa chinensis HOM05D003444 ORTHO05D003963 2.9e-35 154.1 347 33.4
TWI79G0312 Tripterygium wilfordii HOM05D003444 ORTHO05D003963 2.9e-35 154.1 309 32.7
THA.LOC104809841 Tarenaya hassleriana HOM05D003444 ORTHO05D003963 3.8e-35 153.7 347 32.3
PGR083G1868 Punica granatum HOM05D003444 ORTHO05D003963 5.0e-35 153.3 313 33.9
Aqoxy3G01091 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 6.6e-35 152.9 342 33.6
FAN08G2080 Fragaria x ananassa HOM05D003444 ORTHO05D003963 6.6e-35 152.9 346 34.1
MSTRG.23156 Avicennia marina HOM05D003444 ORTHO05D003963 1.5e-34 151.8 364 32.7
Peaxi162Scf00089g01529 Petunia axillaris HOM05D003444 ORTHO05D003963 1.5e-34 151.8 338 32.8
Prupe.5G169400 Prunus persica HOM05D003444 ORTHO05D003963 1.9e-34 151.4 338 32.8
Ah.11g051380 Amaranthus hybridus HOM05D003444 ORTHO05D003963 3.3e-34 150.6 341 32.0
BcaNung05459 Brassica carinata HOM05D003444 ORTHO05D003963 3.3e-34 150.6 352 31.5
Ciclev10020974m.g Citrus clementina HOM05D003444 ORTHO05D003963 4.2e-34 150.2 331 33.2
TAR629G1253 Trochodendron aralioides HOM05D003444 ORTHO05D003963 4.2e-34 150.2 355 34.1
Aa31sc491G40 Aethionema arabicum HOM05D003444 ORTHO05D003963 5.6e-34 149.8 326 33.4
SEGI_34823 Sequoiadendron giganteum HOM05D003444 ORTHO05D003963 5.6e-34 149.8 278 35.3
Glyma.06G179400 Glycine max HOM05D003444 ORTHO05D003963 7.2e-34 149.4 333 32.4
MD06G1169900 Malus domestica HOM05D003444 ORTHO05D003963 7.2e-34 149.4 333 31.8
CARHR082370 Cardamine hirsuta HOM05D003444 ORTHO05D003963 9.5e-34 149.1 342 32.2
DCAR_026161 Daucus carota HOM05D003444 ORTHO05D003963 9.5e-34 149.1 336 31.8
Thhalv10010523m.g Eutrema salsugineum HOM05D003444 ORTHO05D003963 9.5e-34 149.1 367 30.5
Os06g0474200 Oryza sativa ssp. japonica HOM05D003444 ORTHO05D003963 1.6e-33 148.3 341 33.7
Cpa.g.sc35.80 Carica papaya HOM05D003444 ORTHO05D003963 2.8e-33 147.5 339 31.0
Sed0021330 Sechium edule HOM05D003444 ORTHO05D003963 3.6e-33 147.1 336 31.8
VMungo1309G2319 Vigna mungo HOM05D003444 ORTHO05D003963 3.6e-33 147.1 338 33.1
EL10Ac5g10690 Beta vulgaris HOM05D003444 ORTHO05D003963 4.7e-33 146.7 356 31.5
CiPaw.11G022500 Carya illinoinensis HOM05D003444 ORTHO05D003963 4.7e-33 146.7 349 32.4
HanXRQChr16g0504631 Helianthus annuus HOM05D003444 ORTHO05D003963 1.0e-32 145.6 338 30.8
TWI75G1457 Tripterygium wilfordii HOM05D003444 ORTHO05D003963 1.4e-32 145.2 310 31.6
Potri.002G197600 Populus trichocarpa HOM05D003444 ORTHO05D003963 4.0e-32 143.7 335 31.9
Sp5g08230 Schrenkiella parvula HOM05D003444 ORTHO05D003963 4.0e-32 143.7 342 31.0
PGSC0003DMG400018108 Solanum tuberosum HOM05D003444 ORTHO05D003963 4.0e-32 143.7 322 32.9
COL.COLO4_30123 Corchorus olitorius HOM05D003444 ORTHO05D003963 5.2e-32 143.3 345 32.5
Solyc03g112520.3 Solanum lycopersicum HOM05D003444 ORTHO05D003963 6.8e-32 142.9 326 31.9
Sopen03g031580 Solanum pennellii HOM05D003444 ORTHO05D003963 6.8e-32 142.9 319 32.6
Aqoxy3G02821 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 8.9e-32 142.5 327 34.3
Glyma.17G086600 Glycine max HOM05D003444 ORTHO05D003963 1.2e-31 142.1 336 31.0
Gorai.001G071300 Gossypium raimondii HOM05D003444 ORTHO05D003963 1.2e-31 142.1 332 32.2
PSO478G2857 Papaver somniferum HOM05D003444 ORTHO05D003963 1.2e-31 142.1 348 32.2
PSO017G6313 Papaver somniferum HOM05D003444 ORTHO05D003963 1.5e-31 141.7 348 32.5
C08p29430 Brassica napus HOM05D003444 ORTHO05D003963 2.0e-31 141.4 327 31.8
Aqoxy1G03753 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 2.6e-31 141.0 327 33.9
Ca_21949_v3 Cicer arietinum L. HOM05D003444 ORTHO05D003963 2.6e-31 141.0 318 32.1
Lsat_1_v5_gn_1_28101 Lactuca sativa HOM05D003444 ORTHO05D003963 2.6e-31 141.0 340 32.1
Phvul.002G107400 Phaseolus vulgaris HOM05D003444 ORTHO05D003963 2.6e-31 141.0 335 32.5
arahy.Tifrunner.gnm1.ann1.T862AX Arachis hypogaea HOM05D003444 ORTHO05D003963 3.4e-31 140.6 199 40.2
BolC8t50544H Brassica oleracea HOM05D003444 ORTHO05D003963 5.7e-31 139.8 326 31.6
MELO3C026275.2 Cucumis melo HOM05D003444 ORTHO05D003963 5.7e-31 139.8 338 32.2
Nn4g22663 Nelumbo nucifera HOM05D003444 ORTHO05D003963 7.5e-31 139.4 325 32.0
TPR.G31058 Trifolium pratense HOM05D003444 ORTHO05D003963 1.3e-30 138.7 201 39.8
Zm00001eb209200 Zea mays HOM05D003444 ORTHO05D003963 1.3e-30 138.7 351 31.3
A09p47170 Brassica napus HOM05D003444 ORTHO05D003963 1.7e-30 138.3 352 31.2
Cc04_g12590 Coffea canephora HOM05D003444 ORTHO05D003963 1.7e-30 138.3 278 34.2
Duzib205G1696 Durio zibethinus HOM05D003444 ORTHO05D003963 1.7e-30 138.3 360 30.6
QL10p008500 Quercus lobata HOM05D003444 ORTHO05D003963 2.2e-30 137.9 334 32.0
Haze_07554 Corylus avellana HOM05D003444 ORTHO05D003963 2.9e-30 137.5 347 30.5
Lj4g0001447 Lotus japonicus HOM05D003444 ORTHO05D003963 2.9e-30 137.5 340 32.9
CsaV3_1G001270 Cucumis sativus L. HOM05D003444 ORTHO05D003963 3.7e-30 137.1 340 31.5
CAN.G338.8 Capsicum annuum HOM05D003444 ORTHO05D003963 4.9e-30 136.7 341 31.7
Lalb_Chr08g0236641 Lupinus albus HOM05D003444 ORTHO05D003963 4.9e-30 136.7 205 37.6
Eucgr.B00240 Eucalyptus grandis HOM05D003444 ORTHO05D003963 8.3e-30 136.0 332 31.6
Lalb_Chr12g0201761 Lupinus albus HOM05D003444 ORTHO05D003963 1.1e-29 135.6 209 37.3
SGA_v2.0_scaffold90G27874 Striga asiatica HOM05D003444 ORTHO05D003963 1.1e-29 135.6 281 32.4
Ca_16152_v3 Cicer arietinum L. HOM05D003444 ORTHO05D003963 1.8e-29 134.8 348 31.0
arahy.Tifrunner.gnm1.ann1.P2M8BS Arachis hypogaea HOM05D003444 ORTHO05D003963 3.2e-29 134.0 216 37.0
ClCG09G013270 Citrullus lanatus HOM05D003444 ORTHO05D003963 3.2e-29 134.0 331 32.6
Oeu046785.1 Olea europaea HOM05D003444 ORTHO05D003963 3.2e-29 134.0 202 38.6
HPP92_013532 Vanilla planifolia HOM05D003444 ORTHO05D003963 4.1e-29 133.7 325 30.2
Carub.0005s2076 Capsella rubella HOM05D003444 ORTHO05D003963 5.4e-29 133.3 368 29.3
CiPaw.12G029000 Carya illinoinensis HOM05D003444 ORTHO05D003963 5.4e-29 133.3 331 31.1
AT3G54170 Arabidopsis thaliana HOM05D003444 ORTHO05D003963 7.0e-29 132.9 193 39.9
arahy.Tifrunner.gnm1.ann1.GAE861 Arachis hypogaea HOM05D003444 ORTHO05D003963 7.0e-29 132.9 336 30.4
HanXRQChr02g0035691 Helianthus annuus HOM05D003444 ORTHO05D003963 7.0e-29 132.9 361 30.7
BcaC08g44673 Brassica carinata HOM05D003444 ORTHO05D003963 9.2e-29 132.5 348 31.0
Duzib068G1143 Durio zibethinus HOM05D003444 ORTHO05D003963 1.6e-28 131.7 201 38.8
ECA247G0281 Erigeron canadensis HOM05D003444 ORTHO05D003963 1.6e-28 131.7 340 30.6
Migut.G00959 Erythranthe guttata HOM05D003444 ORTHO05D003963 1.6e-28 131.7 231 36.8
Glyma.04G186400 Glycine max HOM05D003444 ORTHO05D003963 1.6e-28 131.7 194 39.7
Medtr3g077320 Medicago truncatula HOM05D003444 ORTHO05D003963 1.6e-28 131.7 201 39.3
SGA_v2.0_scaffold25G10811 Striga asiatica HOM05D003444 ORTHO05D003963 1.6e-28 131.7 270 32.2
AL5G35210 Arabidopsis lyrata HOM05D003444 ORTHO05D003963 2.0e-28 131.3 327 30.9
BraA09t40179Z Brassica rapa HOM05D003444 ORTHO05D003963 2.0e-28 131.3 323 31.3
TPR.G37557 Trifolium pratense HOM05D003444 ORTHO05D003963 2.0e-28 131.3 314 31.2
ATR1152G109 Amborella trichopoda HOM05D003444 ORTHO05D003963 2.7e-28 131.0 340 31.2
AUR62028748 Chenopodium quinoa HOM05D003444 ORTHO05D003963 2.7e-28 131.0 281 32.0
Medtr0325s0020 Medicago truncatula HOM05D003444 ORTHO05D003963 2.7e-28 131.0 338 30.8
Dinv20618 Davidia involucrata HOM05D003444 ORTHO05D003963 3.5e-28 130.6 314 32.8
Glyma.05G040200 Glycine max HOM05D003444 ORTHO05D003963 7.8e-28 129.4 314 32.2
arahy.Tifrunner.gnm1.ann1.N3JE1D Arachis hypogaea HOM05D003444 ORTHO05D003963 1.0e-27 129.0 177 39.5
Lj5A128T62 Lonicera japonica HOM05D003444 ORTHO05D003963 1.0e-27 129.0 371 29.9
Nitab4.5_0001647g0010 Nicotiana tabacum HOM05D003444 ORTHO05D003963 1.0e-27 129.0 339 31.3
Zm00001eb231610 Zea mays HOM05D003444 ORTHO05D003963 1.3e-27 128.6 183 41.5
arahy.Tifrunner.gnm1.ann1.V3MNVK Arachis hypogaea HOM05D003444 ORTHO05D003963 1.7e-27 128.3 170 41.2
TPR.G7254 Trifolium pratense HOM05D003444 ORTHO05D003963 1.7e-27 128.3 342 29.2
CDE05G0978 Ceratophyllum demersum HOM05D003444 ORTHO05D003963 2.3e-27 127.9 344 29.7
Migut.O00133 Erythranthe guttata HOM05D003444 ORTHO05D003963 2.3e-27 127.9 227 37.0
Psat0s2597g0040 Pisum sativum HOM05D003444 ORTHO05D003963 2.9e-27 127.5 162 46.3
arahy.Tifrunner.gnm1.ann1.9FBM9V Arachis hypogaea HOM05D003444 ORTHO05D003963 3.9e-27 127.1 317 32.2
Nitab4.5_0001284g0080 Nicotiana tabacum HOM05D003444 ORTHO05D003963 5.0e-27 126.7 297 32.7
Lj1g0020971 Lotus japonicus HOM05D003444 ORTHO05D003963 6.6e-27 126.3 179 39.1
BcaB01g00212 Brassica carinata HOM05D003444 ORTHO05D003963 8.6e-27 125.9 350 30.0
Psat4g060120 Pisum sativum HOM05D003444 ORTHO05D003963 8.6e-27 125.9 318 31.1
arahy.Tifrunner.gnm1.ann1.NDZJ5A Arachis hypogaea HOM05D003444 ORTHO05D003963 2.5e-26 124.4 272 31.2
arahy.Tifrunner.gnm1.ann1.BAEJ4E Arachis hypogaea HOM05D003444 ORTHO05D003963 4.3e-26 123.6 363 29.5
CDE11G0533 Ceratophyllum demersum HOM05D003444 ORTHO05D003963 4.3e-26 123.6 205 37.1
SalBow5G0548 Salvia bowleyana HOM05D003444 ORTHO05D003963 9.5e-26 122.5 326 28.8
unitig_8.g3056 Utricularia gibba HOM05D003444 ORTHO05D003963 6.8e-24 116.3 326 30.1
AUR62008171 Chenopodium quinoa HOM05D003444 ORTHO05D003963 1.2e-23 115.5 295 29.5
Cfa019176 Carpinus fangiana HOM05D003444 ORTHO05D003963 1.5e-23 115.2 338 29.9
CSS0046637 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 2.6e-23 114.4 344 30.2
COL.COLO4_30111 Corchorus olitorius HOM05D003444 ORTHO05D003963 1.7e-22 111.7 132 43.2
Gohir.D07G067800 Gossypium hirsutum HOM05D003444 ORTHO05D003963 7.0e-21 106.3 129 42.6
QL10p008629 Quercus lobata HOM05D003444 ORTHO05D003963 4.6e-20 103.6 145 39.3
TAR374G1632 Trochodendron aralioides HOM05D003444 ORTHO05D003963 1.3e-19 102.1 161 39.8
Rhsim08G0175500 Rhododendron simsii HOM05D003444 ORTHO05D003963 1.2e-17 95.5 488 24.4
Sed0013109 Sechium edule HOM05D003444 ORTHO05D003963 3.1e-16 90.9 313 28.8
SGA_v2.0_scaffold90G27871 Striga asiatica HOM05D003444 ORTHO05D003963 1.5e-15 88.6 168 35.1
CSS0017244 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 1.7e-14 85.1 117 38.5
ClCG06G017220 Citrullus lanatus HOM05D003444 ORTHO05D003963 2.9e-14 84.3 308 29.2
CSS0033661 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 4.9e-14 83.6 111 40.5
Lsat_1_v5_gn_4_76300 Lactuca sativa HOM05D003444 ORTHO05D003963 1.4e-13 82.0 238 28.6
vmacro19322 Vaccinium macrocarpon HOM05D003444 ORTHO05D003963 2.1e-12 78.2 109 40.4
Hma1.2p1_0046F.1_g026870 Hydrangea macrophylla HOM05D003444 ORTHO05D003963 3.5e-12 77.4 75 50.7
Nitab4.5_0010304g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 3.0e-11 74.3 151 32.5
Cre07.g347250 Chlamydomonas reinhardtii HOM05D062783 ORTHO05D003963 3.9e-11 73.9 136 34.6
vmacro19323 Vaccinium macrocarpon HOM05D003444 ORTHO05D003963 1.5e-07 62.0 220 28.2
Prupe.5G168700 Prunus persica HOM05D003444 ORTHO05D003963 5.8e-07 60.1 49 59.2


User provided reference genes

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