Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g54426 Chara braunii HOM05D003674 ORTHO05D004226 1.4e-303 1045.4 526 100.0
Pp3c15_12230 Physcomitrium patens HOM05D003674 ORTHO05D004226 7.7e-63 245.7 486 31.7
Os01g0678500 Oryza sativa ssp. japonica HOM05D003674 ORTHO05D004226 8.2e-57 225.7 450 32.0
AagrBONN_evm.TU.Sc2ySwM_344.5080 Anthoceros agrestis HOM05D003674 ORTHO05D004226 7.0e-56 222.6 492 30.5
Pp3c1_6270 Physcomitrium patens HOM05D003674 ORTHO05D004226 9.1e-56 222.2 466 32.6
Pp3c1_6272 Physcomitrium patens HOM05D003674 ORTHO05D004226 9.1e-56 222.2 466 32.6
AUR62037356 Chenopodium quinoa HOM05D003674 ORTHO05D004226 2.7e-55 220.7 455 30.8
Aqoxy4G00814 Aquilegia oxysepala HOM05D003674 ORTHO05D004226 4.5e-55 219.9 468 31.0
CiPaw.03G177300 Carya illinoinensis HOM05D003674 ORTHO05D004226 1.7e-54 218.0 464 30.2
Mapoly0002s0274 Marchantia polymorpha HOM05D003674 ORTHO05D004226 2.9e-54 217.2 456 30.5
CiPaw.04G126100 Carya illinoinensis HOM05D003674 ORTHO05D004226 3.8e-54 216.9 452 30.8
Actinidia11076 Actinidia chinensis HOM05D003674 ORTHO05D004226 6.5e-54 216.1 501 28.9
RcHm_v2.0_Chr2g0126531 Rosa chinensis HOM05D003674 ORTHO05D004226 6.5e-54 216.1 454 30.0
EL10Ac9g20767 Beta vulgaris HOM05D003674 ORTHO05D004226 8.5e-54 215.7 479 30.9
Actinidia11032 Actinidia chinensis HOM05D003674 ORTHO05D004226 1.5e-53 214.9 464 29.5
Cpa.g.sc848.1 Carica papaya HOM05D003674 ORTHO05D004226 1.5e-53 214.9 454 30.8
FvH4_6g26210 Fragaria vesca HOM05D003674 ORTHO05D004226 1.9e-53 214.5 451 29.7
MBI06_g04180_MAGBIO Magnolia biondii HOM05D003674 ORTHO05D004226 1.9e-53 214.5 455 30.8
Gohir.A03G156500 Gossypium hirsutum HOM05D003674 ORTHO05D004226 5.5e-53 213.0 449 30.5
Rhsim06G0142000 Rhododendron simsii HOM05D003674 ORTHO05D004226 7.2e-53 212.6 465 29.9
RcHm_v2.0_Chr2g0126551 Rosa chinensis HOM05D003674 ORTHO05D004226 7.2e-53 212.6 493 28.6
Gorai.005G201400 Gossypium raimondii HOM05D003674 ORTHO05D004226 9.4e-53 212.2 449 30.5
Dinv23635 Davidia involucrata HOM05D003674 ORTHO05D004226 1.6e-52 211.5 455 30.3
Ciclev10014388m.g Citrus clementina HOM05D003674 ORTHO05D004226 2.1e-52 211.1 461 32.5
Medtr2g090380 Medicago truncatula HOM05D003674 ORTHO05D004226 2.1e-52 211.1 455 29.9
CAN.G248.4 Capsicum annuum HOM05D003674 ORTHO05D004226 2.7e-52 210.7 468 29.7
GSVIVG01020549001 Vitis vinifera HOM05D003674 ORTHO05D004226 3.6e-52 210.3 461 31.5
CSS0005418 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 4.7e-52 209.9 457 31.3
CsaV3_7G004450 Cucumis sativus L. HOM05D003674 ORTHO05D004226 4.7e-52 209.9 489 29.0
Lj3g0012901 Lotus japonicus HOM05D003674 ORTHO05D004226 6.1e-52 209.5 450 29.8
PGR142G3148 Punica granatum HOM05D003674 ORTHO05D004226 6.1e-52 209.5 476 28.4
CSS0035927 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 8.0e-52 209.1 453 28.7
ClCG07G002890 Citrullus lanatus HOM05D003674 ORTHO05D004226 1.0e-51 208.8 454 31.1
Nitab4.5_0004344g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.0e-51 208.8 468 29.5
Sc12g0003090 Simmondsia chinensis HOM05D003674 ORTHO05D004226 1.0e-51 208.8 461 28.9
TAR624G0345 Trochodendron aralioides HOM05D003674 ORTHO05D004226 1.0e-51 208.8 457 29.1
MELO3C018734.2 Cucumis melo HOM05D003674 ORTHO05D004226 1.4e-51 208.4 452 30.3
Peaxi162Scf00132g00119 Petunia axillaris HOM05D003674 ORTHO05D004226 1.8e-51 208.0 468 29.7
Solyc07g053970.3 Solanum lycopersicum HOM05D003674 ORTHO05D004226 1.8e-51 208.0 472 28.8
HPP92_008135 Vanilla planifolia HOM05D003674 ORTHO05D004226 1.8e-51 208.0 475 29.5
SalBow1G3138 Salvia bowleyana HOM05D003674 ORTHO05D004226 2.3e-51 207.6 487 29.4
SalBow1G0286 Salvia bowleyana HOM05D003674 ORTHO05D004226 3.0e-51 207.2 479 29.0
Glyma.12G204400 Glycine max HOM05D003674 ORTHO05D004226 4.0e-51 206.8 456 29.2
Potri.013G131100 Populus trichocarpa HOM05D003674 ORTHO05D004226 4.0e-51 206.8 459 30.3
Phvul.004G108300 Phaseolus vulgaris HOM05D003674 ORTHO05D004226 6.8e-51 206.1 453 29.1
Aa31LG5G2940 Aethionema arabicum HOM05D003674 ORTHO05D004226 8.8e-51 205.7 454 30.0
MD17G1240200 Malus domestica HOM05D003674 ORTHO05D004226 8.8e-51 205.7 506 28.7
Thecc.02G180000 Theobroma cacao HOM05D003674 ORTHO05D004226 8.8e-51 205.7 451 29.9
Cfa014617 Carpinus fangiana HOM05D003674 ORTHO05D004226 2.0e-50 204.5 459 28.8
DCAR_021245 Daucus carota HOM05D003674 ORTHO05D004226 2.0e-50 204.5 456 29.6
Duzib132G0159 Durio zibethinus HOM05D003674 ORTHO05D004226 2.6e-50 204.1 450 29.6
Eucgr.K01029 Eucalyptus grandis HOM05D003674 ORTHO05D004226 4.4e-50 203.4 455 29.7
Glyma.13G296900 Glycine max HOM05D003674 ORTHO05D004226 4.4e-50 203.4 454 28.9
MD09G1247300 Malus domestica HOM05D003674 ORTHO05D004226 4.4e-50 203.4 455 29.2
Psat5g272320 Pisum sativum HOM05D003674 ORTHO05D004226 4.4e-50 203.4 475 28.8
VMungo0464G1662 Vigna mungo HOM05D003674 ORTHO05D004226 4.4e-50 203.4 460 30.0
TPR.G6424 Trifolium pratense HOM05D003674 ORTHO05D004226 5.7e-50 203.0 451 29.3
CSS0020583 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 7.5e-50 202.6 437 30.0
Carub.0006s3351 Capsella rubella HOM05D003674 ORTHO05D004226 7.5e-50 202.6 455 30.1
FAN05G0320 Fragaria x ananassa HOM05D000230 ORTHO05D000176 7.5e-50 202.6 455 28.8
SGA_v2.0_scaffold322G48614 Striga asiatica HOM05D003674 ORTHO05D004226 7.5e-50 202.6 454 30.0
AL6G49310 Arabidopsis lyrata HOM05D003674 ORTHO05D004226 9.8e-50 202.2 457 30.0
Lsat_1_v5_gn_4_66721 Lactuca sativa HOM05D003674 ORTHO05D004226 1.7e-49 201.4 481 29.3
THA.LOC104826033 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 1.7e-49 201.4 459 30.7
PSO832G0572 Papaver somniferum HOM05D003674 ORTHO05D004226 2.2e-49 201.1 460 29.6
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 2.2e-49 201.1 469 27.9
BraA09t35927Z Brassica rapa HOM05D003674 ORTHO05D004226 2.8e-49 200.7 476 29.6
Lalb_Chr22g0356561 Lupinus albus HOM05D003674 ORTHO05D004226 2.8e-49 200.7 462 28.6
PSO210G7128 Papaver somniferum HOM05D003674 ORTHO05D004226 2.8e-49 200.7 480 29.6
arahy.Tifrunner.gnm1.ann1.1TZ75T Arachis hypogaea HOM05D003674 ORTHO05D004226 4.8e-49 199.9 471 27.4
AT4G03560 Arabidopsis thaliana HOM05D003674 ORTHO05D004226 6.3e-49 199.5 457 30.2
BcaB01g02542 Brassica carinata HOM05D003674 ORTHO05D004226 6.3e-49 199.5 478 30.1
arahy.Tifrunner.gnm1.ann1.1DM7TY Arachis hypogaea HOM05D003674 ORTHO05D004226 8.3e-49 199.1 473 27.3
BcaC01g06668 Brassica carinata HOM05D003674 ORTHO05D004226 8.3e-49 199.1 477 30.2
BcaC04g23961 Brassica carinata HOM05D003674 ORTHO05D004226 8.3e-49 199.1 457 30.9
Sabra13G0110800 Salix brachista HOM05D003674 ORTHO05D004226 1.1e-48 198.7 479 28.4
Sp6g03570 Schrenkiella parvula HOM05D003674 ORTHO05D004226 1.1e-48 198.7 457 30.2
BolC9t53217H Brassica oleracea HOM05D003674 ORTHO05D004226 1.4e-48 198.4 457 30.4
BcaB01g01906 Brassica carinata HOM05D003674 ORTHO05D004226 3.1e-48 197.2 457 30.2
A03p30360 Brassica napus HOM05D003674 ORTHO05D004226 4.1e-48 196.8 477 29.8
BolC3t15980H Brassica oleracea HOM05D003674 ORTHO05D004226 4.1e-48 196.8 477 30.2
BraA03t12218Z Brassica rapa HOM05D003674 ORTHO05D004226 4.1e-48 196.8 481 30.1
PSO675G3793 Papaver somniferum HOM05D003674 ORTHO05D004226 4.1e-48 196.8 459 28.5
THA.LOC104801172 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 5.4e-48 196.4 483 30.2
CARHR251990 Cardamine hirsuta HOM05D003674 ORTHO05D004226 7.0e-48 196.1 478 29.9
COL.COLO4_30194 Corchorus olitorius HOM05D003674 ORTHO05D004226 7.0e-48 196.1 457 29.3
Eucgr.K01031 Eucalyptus grandis HOM05D003674 ORTHO05D004226 9.1e-48 195.7 455 28.6
ECA234G3736 Erigeron canadensis HOM05D003674 ORTHO05D004226 1.6e-47 194.9 452 29.6
unitig_749.g13960 Utricularia gibba HOM05D003674 ORTHO05D004226 1.6e-47 194.9 481 28.1
Cc05_g07170 Coffea canephora HOM05D003674 ORTHO05D004226 2.7e-47 194.1 456 29.4
Eucgr.K01030 Eucalyptus grandis HOM05D003674 ORTHO05D004226 3.5e-47 193.7 456 28.3
Oeu017490.2 Olea europaea HOM05D003674 ORTHO05D004226 3.5e-47 193.7 436 30.0
C03p36660 Brassica napus HOM05D003674 ORTHO05D004226 5.9e-47 193.0 474 29.3
QL08p038784 Quercus lobata HOM05D003674 ORTHO05D004226 3.8e-46 190.3 498 27.7
HanXRQChr10g0297111 Helianthus annuus HOM05D003674 ORTHO05D004226 6.5e-46 189.5 449 29.2
QL08p038841 Quercus lobata HOM05D003674 ORTHO05D004226 1.9e-45 188.0 498 26.5
Sed0011332 Sechium edule HOM05D003674 ORTHO05D004226 3.2e-45 187.2 442 29.6
Ah.01g004260 Amaranthus hybridus HOM05D003674 ORTHO05D004226 4.2e-45 186.8 478 29.3
FAN09G3196 Fragaria x ananassa HOM05D000230 ORTHO05D004226 7.2e-45 186.0 408 28.9
DCAR_013010 Daucus carota HOM05D003674 ORTHO05D004226 3.0e-43 180.6 462 28.8
Thhalv10029480m.g Eutrema salsugineum HOM05D003674 ORTHO05D004226 8.8e-43 179.1 457 29.5
DCAR_013011 Daucus carota HOM05D003674 ORTHO05D004226 3.4e-42 177.2 475 27.4
Sabra13G0110700 Salix brachista HOM05D003674 ORTHO05D004226 8.3e-41 172.6 603 25.5
A09p02830 Brassica napus HOM05D000230 ORTHO05D000176 1.1e-40 172.2 454 28.2
ATR0737G001 Amborella trichopoda HOM05D003674 ORTHO05D004226 1.8e-40 171.4 382 30.4
Hund01095 Selenicereus undatus HOM05D003674 ORTHO05D004226 1.8e-40 171.4 456 28.1
HanXRQChr06g0179591 Helianthus annuus HOM05D003674 ORTHO05D004226 7.0e-40 169.5 467 27.6
Prupe.3G138600 Prunus persica HOM05D003674 ORTHO05D004226 3.5e-39 167.2 376 28.7
Gohir.D02G179632 Gossypium hirsutum HOM05D003674 ORTHO05D004226 4.5e-39 166.8 407 28.5
DCAR_019181 Daucus carota HOM05D003674 ORTHO05D004226 7.7e-39 166.0 450 29.6
Hma1.2p1_1937F.1_g308270 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 1.0e-38 165.6 323 30.3
Nitab4.5_0000512g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.0e-38 165.6 286 34.3
Zm00001eb360320 Zea mays HOM05D003674 ORTHO05D004226 1.3e-38 165.2 321 31.2
AUR62042592 Chenopodium quinoa HOM05D003674 ORTHO05D004226 6.6e-38 162.9 453 27.8
Haze_13165 Corylus avellana HOM05D003674 ORTHO05D004226 3.3e-37 160.6 286 32.5
TWI75G1008 Tripterygium wilfordii HOM05D003674 ORTHO05D004226 7.3e-37 159.5 396 29.3
MSTRG.14342 Avicennia marina HOM05D003674 ORTHO05D004226 2.1e-36 157.9 324 31.8
Migut.H01178 Erythranthe guttata HOM05D003674 ORTHO05D004226 2.3e-35 154.5 289 33.2
Pp3c14_20770 Physcomitrium patens HOM05D003674 ORTHO05D004226 6.8e-35 152.9 490 28.4
QL08p038913 Quercus lobata HOM05D003674 ORTHO05D004226 5.7e-34 149.8 547 23.4
Pp3c3_16950 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.7e-33 148.3 377 27.3
Manes.13G146400 Manihot esculenta HOM05D003674 ORTHO05D004226 2.9e-33 147.5 263 32.7
Oeu058850.1 Olea europaea HOM05D003674 ORTHO05D004226 3.7e-33 147.1 257 32.3
CAN.G1472.4 Capsicum annuum HOM05D003674 ORTHO05D004226 1.8e-32 144.8 286 30.8
Nn1g06551 Nelumbo nucifera HOM05D003674 ORTHO05D004226 3.2e-32 144.1 337 30.6
Pp3c18_10190 Physcomitrium patens HOM05D003674 ORTHO05D004226 5.4e-32 143.3 475 25.9
Peaxi162Scf00132g00117 Petunia axillaris HOM05D003674 ORTHO05D004226 9.2e-32 142.5 297 30.0
Pp3c1_28370 Physcomitrium patens HOM05D003674 ORTHO05D004226 9.2e-32 142.5 448 25.9
Pp3c19_18680 Physcomitrium patens HOM05D003674 ORTHO05D004226 4.6e-31 140.2 477 25.6
Pp3c21_11410 Physcomitrium patens HOM05D003674 ORTHO05D004226 6.6e-30 136.3 475 25.1
Pp3c2_10230 Physcomitrium patens HOM05D003674 ORTHO05D004226 6.6e-30 136.3 450 26.2
TAR624G0523 Trochodendron aralioides HOM05D003674 ORTHO05D004226 2.5e-29 134.4 338 27.2
Ca_01498_v3 Cicer arietinum L. HOM05D003674 ORTHO05D004226 2.1e-28 131.3 235 33.2
Oeu017491.1 Olea europaea HOM05D003674 ORTHO05D004226 1.8e-27 128.3 264 30.3
Mapoly0062s0036 Marchantia polymorpha HOM05D003674 ORTHO05D004226 7.5e-26 122.9 424 25.0
Mapoly0050s0061 Marchantia polymorpha HOM05D003674 ORTHO05D004226 6.4e-25 119.8 444 24.1
CDE06G1319 Ceratophyllum demersum HOM05D003674 ORTHO05D004226 1.7e-22 111.7 254 29.5
MSTRG.14334 Avicennia marina HOM05D003674 ORTHO05D004226 6.8e-19 99.8 184 33.7
Hma1.2p1_1836F.1_g304720 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 6.8e-19 99.8 123 36.6
vmacro12305 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 5.8e-18 96.7 171 32.7
SHI10407 Sapria himalayana HOM05D003674 ORTHO05D004226 2.9e-17 94.4 254 27.2
FAN02G2237 Fragaria x ananassa HOM05D003674 ORTHO05D004226 3.7e-17 94.0 468 20.7
MSTRG.14339 Avicennia marina HOM05D003674 ORTHO05D004226 8.6e-14 82.8 119 37.0
Hma1.2p1_1836F.1_g304700 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 2.6e-10 71.2 94 35.1
Migut.H01179 Erythranthe guttata HOM05D003674 ORTHO05D004226 4.4e-10 70.5 142 29.6
SEGI_19203 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 7.6e-10 69.7 127 31.5
TAR624G0173 Trochodendron aralioides HOM05D003674 ORTHO05D004226 7.6e-10 69.7 136 30.9
MSTRG.14340 Avicennia marina HOM05D003674 ORTHO05D004226 4.9e-09 67.0 91 36.3
MSTRG.14344 Avicennia marina HOM05D003674 ORTHO05D004226 6.4e-09 66.6 107 32.7
Hma1.2p1_1145F.1_g261410 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 2.4e-08 64.7 130 33.1
vmacro12304 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 3.2e-08 64.3 151 30.5
Nn1g06550 Nelumbo nucifera HOM05D003674 ORTHO05D004226 1.2e-07 62.4 116 32.8
Peaxi162Scf00132g00118 Petunia axillaris HOM05D003674 ORTHO05D004226 2.7e-07 61.2 92 31.5
Nitab4.5_0000512g0010 Nicotiana tabacum HOM05D003674 ORTHO05D004226 3.5e-07 60.8 99 30.3


User provided reference genes

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