Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 1.5e-102 376.3 204 100.0
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 3.3e-30 136.0 134 61.9
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 8.2e-29 131.3 134 59.0
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 1.1e-28 131.0 140 54.3
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 5.9e-27 125.2 136 53.7
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 1.0e-26 124.4 136 52.2
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 2.2e-26 123.2 136 53.7
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 2.9e-26 122.9 136 54.4
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 2.9e-26 122.9 136 53.7
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 5.0e-26 122.1 137 56.2
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 8.5e-26 121.3 136 52.2
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 8.5e-26 121.3 136 53.7
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 1.4e-25 120.6 136 52.9
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 1.9e-25 120.2 136 53.7
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 2.5e-25 119.8 136 52.9
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 3.2e-25 119.4 136 51.5
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 3.2e-25 119.4 136 52.9
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 5.5e-25 118.6 136 52.2
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 5.5e-25 118.6 136 52.2
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 5.5e-25 118.6 142 48.6
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 7.2e-25 118.2 145 52.4
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 7.2e-25 118.2 136 52.9
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 7.2e-25 118.2 136 52.9
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 9.4e-25 117.9 136 52.2
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 9.4e-25 117.9 136 51.5
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 9.4e-25 117.9 136 50.7
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 1.2e-24 117.5 136 51.5
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 1.6e-24 117.1 145 51.7
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 1.6e-24 117.1 136 50.7
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 1.6e-24 117.1 136 50.7
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 1.6e-24 117.1 136 50.7
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 2.1e-24 116.7 136 51.5
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 2.1e-24 116.7 136 51.5
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 2.7e-24 116.3 139 48.2
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 2.7e-24 116.3 142 50.0
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 3.6e-24 115.9 136 51.5
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 4.7e-24 115.5 136 50.0
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 4.7e-24 115.5 136 51.5
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 4.7e-24 115.5 134 51.5
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 4.7e-24 115.5 135 50.4
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 4.7e-24 115.5 136 49.3
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 4.7e-24 115.5 138 52.2
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 6.1e-24 115.2 142 50.0
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 6.1e-24 115.2 136 49.3
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 7.9e-24 114.8 145 50.3
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 7.9e-24 114.8 136 50.7
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 7.9e-24 114.8 142 49.3
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.0e-23 114.4 136 50.7
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.0e-23 114.4 136 50.7
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 1.0e-23 114.4 135 48.9
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 1.0e-23 114.4 136 52.9
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 1.0e-23 114.4 136 50.7
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 1.4e-23 114.0 136 51.5
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 1.4e-23 114.0 136 51.5
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 1.8e-23 113.6 136 50.7
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 1.8e-23 113.6 142 47.9
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 1.8e-23 113.6 136 50.7
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 5.2e-23 112.1 136 50.0
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 5.2e-23 112.1 134 51.5
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 5.2e-23 112.1 136 52.2
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 6.7e-23 111.7 136 50.7
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 8.8e-23 111.3 134 51.5
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 1.1e-22 110.9 146 47.3
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 2.0e-22 110.2 142 47.2
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 3.3e-22 109.4 142 48.6
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 4.4e-22 109.0 136 49.3
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 5.7e-22 108.6 135 49.6
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 9.7e-22 107.8 136 47.8
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 1.3e-21 107.5 135 51.1
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 1.3e-21 107.5 136 52.9
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 1.7e-21 107.1 136 47.1
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 2.2e-21 106.7 136 46.3
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 2.8e-21 106.3 136 47.1
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 2.8e-21 106.3 142 43.0
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 3.7e-21 105.9 136 47.1
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 3.7e-21 105.9 136 47.1
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 6.3e-21 105.1 136 45.6
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 6.3e-21 105.1 136 46.3
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 6.3e-21 105.1 136 46.3
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 8.2e-21 104.8 136 45.6
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 8.2e-21 104.8 137 46.7
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 1.1e-20 104.4 136 46.3
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 1.1e-20 104.4 136 47.1
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 1.1e-20 104.4 142 45.8
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 1.1e-20 104.4 134 46.3
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 1.4e-20 104.0 136 48.5
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 1.8e-20 103.6 139 46.0
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 1.8e-20 103.6 139 46.0
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 1.8e-20 103.6 134 45.5
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 1.8e-20 103.6 136 47.8
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 2.4e-20 103.2 136 47.8
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 2.4e-20 103.2 136 46.3
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 2.4e-20 103.2 146 47.3
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 4.1e-20 102.4 136 46.3
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 5.3e-20 102.1 142 47.2
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 5.3e-20 102.1 134 46.3
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 7.0e-20 101.7 136 44.1
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 7.0e-20 101.7 136 44.1
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 9.1e-20 101.3 136 44.9
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 1.2e-19 100.9 136 47.8
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 1.2e-19 100.9 136 50.0
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 1.6e-19 100.5 136 43.4
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 2.6e-19 99.8 136 44.1
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 2.6e-19 99.8 136 44.1
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 2.6e-19 99.8 139 46.0
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 4.5e-19 99.0 142 44.4
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 4.5e-19 99.0 136 44.9
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 4.5e-19 99.0 142 44.4
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 5.9e-19 98.6 139 44.6
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 5.9e-19 98.6 139 46.0
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 7.7e-19 98.2 142 43.7
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 1.3e-18 97.4 136 44.1
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 1.3e-18 97.4 136 44.9
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 2.2e-18 96.7 142 44.4
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 3.8e-18 95.9 142 43.0
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 6.5e-18 95.1 136 46.3
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.1e-17 94.4 142 46.5
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.1e-17 94.4 142 45.8
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 1.5e-17 94.0 136 46.3
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.2e-16 90.9 131 41.2
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 1.2e-16 90.9 128 46.1
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.6e-16 90.5 189 34.4
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 1.4e-15 87.4 113 46.0
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.2e-14 84.3 142 43.7
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.5e-14 84.0 142 43.0
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 2.0e-14 83.6 136 38.2
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 5.7e-14 82.0 136 38.2
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.4e-12 77.4 142 41.5
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 1.8e-12 77.0 91 50.5
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 5.9e-11 72.0 136 38.2
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 3.8e-10 69.3 96 45.8
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 6.1e-08 62.0 89 44.9
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 1.0e-07 61.2 47 63.8
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 9.8e-06 54.7 92 42.4


User provided reference genes

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