Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 5.1e-111 404.4 207 100.0
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 2.6e-46 189.5 124 73.4
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 3.4e-46 189.1 171 58.5
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 5.7e-46 188.3 153 65.4
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 5.7e-46 188.3 135 67.4
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 5.7e-46 188.3 172 56.4
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 7.5e-46 188.0 146 63.7
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 7.5e-46 188.0 164 59.8
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 9.8e-46 187.6 135 67.4
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 9.8e-46 187.6 154 61.7
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.3e-45 187.2 136 67.6
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.7e-45 186.8 154 60.4
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 1.7e-45 186.8 131 67.2
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 2.8e-45 186.0 135 66.7
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 2.8e-45 186.0 150 63.3
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 4.9e-45 185.3 126 69.8
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 4.9e-45 185.3 147 61.2
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 4.9e-45 185.3 147 61.2
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 6.3e-45 184.9 171 55.0
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 6.3e-45 184.9 146 63.7
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 6.3e-45 184.9 154 59.7
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 6.3e-45 184.9 124 70.2
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 8.3e-45 184.5 126 69.0
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 8.3e-45 184.5 172 55.8
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 8.3e-45 184.5 172 55.8
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 8.3e-45 184.5 154 60.4
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 8.3e-45 184.5 145 64.8
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 8.3e-45 184.5 145 64.8
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 8.3e-45 184.5 154 60.4
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 8.3e-45 184.5 133 67.7
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 8.3e-45 184.5 157 59.2
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 1.1e-44 184.1 154 60.4
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 1.4e-44 183.7 172 55.2
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 1.4e-44 183.7 152 62.5
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 1.4e-44 183.7 124 70.2
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 1.4e-44 183.7 128 69.5
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.4e-44 183.7 150 62.7
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 1.8e-44 183.3 172 55.2
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 1.8e-44 183.3 172 55.2
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.8e-44 183.3 156 61.5
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 2.4e-44 183.0 200 52.0
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 2.4e-44 183.0 149 61.1
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 2.4e-44 183.0 129 67.4
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 2.4e-44 183.0 146 61.6
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 3.1e-44 182.6 172 55.2
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 3.1e-44 182.6 153 60.8
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 3.1e-44 182.6 158 61.4
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 3.1e-44 182.6 156 59.0
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 3.1e-44 182.6 133 66.9
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 4.1e-44 182.2 151 60.9
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 4.1e-44 182.2 156 60.3
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 4.1e-44 182.2 154 59.7
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 5.4e-44 181.8 154 59.7
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 5.4e-44 181.8 200 52.0
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 5.4e-44 181.8 146 61.0
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 5.4e-44 181.8 144 61.1
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 7.0e-44 181.4 152 61.2
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 7.0e-44 181.4 149 60.4
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 9.2e-44 181.0 120 69.2
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 9.2e-44 181.0 150 62.7
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 9.2e-44 181.0 154 59.7
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 9.2e-44 181.0 166 57.2
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 9.2e-44 181.0 157 59.2
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 9.2e-44 181.0 157 59.2
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 1.2e-43 180.6 168 56.5
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 1.2e-43 180.6 152 61.2
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 1.6e-43 180.3 143 62.2
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 1.6e-43 180.3 167 55.7
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 1.6e-43 180.3 138 63.8
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 2.0e-43 179.9 120 70.0
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 2.0e-43 179.9 164 56.1
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 2.0e-43 179.9 149 59.7
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 2.7e-43 179.5 126 68.3
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 2.7e-43 179.5 149 62.4
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 2.7e-43 179.5 201 50.7
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 2.7e-43 179.5 152 59.9
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.5e-43 179.1 149 59.1
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 3.5e-43 179.1 154 59.1
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 3.5e-43 179.1 129 65.9
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 3.5e-43 179.1 129 65.9
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 3.5e-43 179.1 149 59.1
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 3.5e-43 179.1 123 68.3
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 4.5e-43 178.7 149 59.1
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 4.5e-43 178.7 149 59.1
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 4.5e-43 178.7 138 63.0
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 4.5e-43 178.7 141 60.3
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 4.5e-43 178.7 129 65.9
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 4.5e-43 178.7 131 65.6
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 5.9e-43 178.3 125 68.0
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 5.9e-43 178.3 156 57.7
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 5.9e-43 178.3 157 57.3
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 5.9e-43 178.3 143 61.5
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 7.8e-43 177.9 130 66.2
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 7.8e-43 177.9 145 60.0
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 7.8e-43 177.9 143 60.8
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.0e-42 177.6 172 56.4
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 1.0e-42 177.6 206 49.0
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.3e-42 177.2 149 59.1
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 1.7e-42 176.8 153 59.5
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 1.7e-42 176.8 153 59.5
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 1.7e-42 176.8 122 68.0
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 2.3e-42 176.4 157 55.4
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 2.3e-42 176.4 157 55.4
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 2.3e-42 176.4 154 58.4
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 2.3e-42 176.4 139 65.5
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 3.8e-42 175.6 143 60.8
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 5.0e-42 175.3 156 55.8
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 5.0e-42 175.3 135 63.0
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 5.0e-42 175.3 143 60.8
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 6.6e-42 174.9 152 57.2
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 6.6e-42 174.9 142 60.6
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.6e-42 174.9 163 55.2
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 6.6e-42 174.9 148 60.1
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 6.6e-42 174.9 144 59.0
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 1.9e-41 173.3 198 49.5
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 1.9e-41 173.3 207 45.9
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 2.5e-41 172.9 155 58.1
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 7.3e-41 171.4 126 65.1
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 7.3e-41 171.4 148 57.4
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 9.5e-41 171.0 162 53.1
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 9.5e-41 171.0 150 60.7
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 6.1e-40 168.3 121 64.5
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 8.0e-40 167.9 133 63.9
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.4e-39 167.2 141 57.4
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.8e-39 166.8 141 57.4
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 2.3e-39 166.4 166 52.4
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 5.2e-39 165.2 150 56.7
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 8.9e-39 164.5 124 65.3
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 1.2e-38 164.1 118 66.1
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 4.4e-38 162.2 129 64.3
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 5.8e-38 161.8 128 59.4
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 5.8e-38 161.8 197 47.7
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 5.8e-38 161.8 129 64.3
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 7.5e-38 161.4 141 60.3
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 9.8e-38 161.0 131 58.0
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 1.3e-37 160.6 163 50.9
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 1.7e-37 160.2 114 67.5
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 2.4e-36 156.4 104 71.2
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 3.0e-34 149.4 282 36.9
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.1e-28 129.0 88 68.2
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 5.4e-28 128.6 88 69.3
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 5.1e-26 122.1 129 54.3
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 1.9e-25 120.2 130 50.8
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.3e-25 119.0 81 66.7
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 2.3e-23 113.2 118 47.5
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 2.3e-23 113.2 111 53.2
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 9.9e-22 107.8 148 43.2
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 1.3e-21 107.5 125 49.6
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 3.7e-21 105.9 110 44.5
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 4.9e-21 105.5 133 43.6
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 4.6e-19 99.0 121 47.9
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 5.1e-18 95.5 116 46.6
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 4.7e-16 89.0 89 55.1
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 4.7e-16 89.0 89 55.1
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 1.8e-15 87.0 118 42.4
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 4.0e-15 85.9 140 40.7
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 2.4e-12 76.6 89 39.3
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 3.6e-08 62.8 78 44.9
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.7e-08 62.4 45 62.2
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 3.1e-07 59.7 118 37.3
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 1.2e-06 57.8 51 54.9


User provided reference genes

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