Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g52222 Chara braunii HOM05D007345 ORTHO05D009277 6.0e-302 1040.4 673 100.0
Mapoly0014s0070 Marchantia polymorpha HOM05D007345 ORTHO05D009277 1.2e-55 222.2 200 53.5
Pp3c11_25980 Physcomitrium patens HOM05D007345 ORTHO05D009277 9.6e-50 202.6 201 46.3
SMO352G0035 Selaginella moellendorffii HOM05D007345 ORTHO05D009277 1.2e-47 195.7 202 47.0
TAR485G0005 Trochodendron aralioides HOM05D007345 ORTHO05D009277 4.9e-46 190.3 212 44.3
TAR629G2718 Trochodendron aralioides HOM05D007345 ORTHO05D009277 6.4e-46 189.9 212 44.3
TAR629G0192 Trochodendron aralioides HOM05D007345 ORTHO05D009277 4.2e-45 187.2 212 43.9
AagrBONN_evm.TU.Sc2ySwM_117.2683 Anthoceros agrestis HOM05D007345 ORTHO05D009277 7.1e-45 186.4 154 53.9
CDE05G0430 Ceratophyllum demersum HOM05D007345 ORTHO05D009277 1.2e-44 185.7 202 45.0
SGA_v2.0_scaffold164G38118 Striga asiatica HOM05D007345 ORTHO05D009277 3.0e-43 181.0 205 45.9
FAN18G3356 Fragaria x ananassa HOM05D007345 ORTHO05D009277 6.6e-43 179.9 218 41.3
Actinidia35146 Actinidia chinensis HOM05D007345 ORTHO05D009277 8.7e-43 179.5 222 42.8
FAN08G2921 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.5e-42 178.7 215 41.9
PSO782G0509 Papaver somniferum HOM05D007345 ORTHO05D009277 2.5e-42 177.9 212 41.0
GSVIVG01029370001 Vitis vinifera HOM05D007345 ORTHO05D009277 3.3e-42 177.6 207 43.5
COL.COLO4_05810 Corchorus olitorius HOM05D007345 ORTHO05D009277 4.3e-42 177.2 207 44.0
Dinv13291 Davidia involucrata HOM05D007345 ORTHO05D009277 4.3e-42 177.2 213 43.2
Potri.015G029700 Populus trichocarpa HOM05D007345 ORTHO05D009277 4.3e-42 177.2 212 41.5
RcHm_v2.0_Chr7g0177311 Rosa chinensis HOM05D007345 ORTHO05D009277 4.3e-42 177.2 221 41.6
HPP92_025712 Vanilla planifolia HOM05D007345 ORTHO05D009277 4.3e-42 177.2 216 44.4
HPP92_025754 Vanilla planifolia HOM05D007345 ORTHO05D009277 5.6e-42 176.8 216 44.4
CARHR093010 Cardamine hirsuta HOM05D007345 ORTHO05D009277 1.3e-41 175.6 215 42.8
Ciclev10021617m.g Citrus clementina HOM05D007345 ORTHO05D009277 1.3e-41 175.6 218 39.0
Thecc.03G072800 Theobroma cacao HOM05D007345 ORTHO05D009277 1.3e-41 175.6 215 41.9
unitig_0.g26 Utricularia gibba HOM05D007345 ORTHO05D009277 1.3e-41 175.6 217 41.0
AUR62033076 Chenopodium quinoa HOM05D007345 ORTHO05D009277 3.6e-41 174.1 215 41.9
Sc10g0008500 Simmondsia chinensis HOM05D007345 ORTHO05D009277 3.6e-41 174.1 213 42.3
Rhsim12G0136700 Rhododendron simsii HOM05D007345 ORTHO05D009277 8.1e-41 172.9 204 45.6
Sed0020487 Sechium edule HOM05D007345 ORTHO05D009277 8.1e-41 172.9 220 40.0
Glyma.05G249000 Glycine max HOM05D007345 ORTHO05D009277 1.1e-40 172.6 204 44.1
Sp3g15810 Schrenkiella parvula HOM05D007345 ORTHO05D009277 1.1e-40 172.6 211 42.2
HanXRQChr13g0409411 Helianthus annuus HOM05D007345 ORTHO05D009277 1.4e-40 172.2 218 40.8
Aqoxy3G04287 Aquilegia oxysepala HOM05D007345 ORTHO05D009277 1.8e-40 171.8 204 46.1
FAN04G1809 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.8e-40 171.8 207 41.5
Lj5A166T75 Lonicera japonica HOM05D007345 ORTHO05D009277 2.4e-40 171.4 198 43.9
Oeu061194.1 Olea europaea HOM05D007345 ORTHO05D009277 2.4e-40 171.4 207 42.5
Cpa.g.sc111.41 Carica papaya HOM05D007345 ORTHO05D009277 3.1e-40 171.0 214 42.1
CiPaw.16G072000 Carya illinoinensis HOM05D007345 ORTHO05D009277 3.1e-40 171.0 224 41.5
FvH4_5g18270 Fragaria vesca HOM05D007345 ORTHO05D009277 3.1e-40 171.0 206 41.7
AL3G30780 Arabidopsis lyrata HOM05D007345 ORTHO05D009277 5.3e-40 170.2 215 41.9
Sabra15G0024900 Salix brachista HOM05D007345 ORTHO05D009277 5.3e-40 170.2 196 43.4
Phvul.002G333600 Phaseolus vulgaris HOM05D007345 ORTHO05D009277 6.9e-40 169.9 213 42.7
BraA05t22048Z Brassica rapa HOM05D007345 ORTHO05D009277 9.0e-40 169.5 215 40.0
Cfa017791 Carpinus fangiana HOM05D007345 ORTHO05D009277 1.2e-39 169.1 220 39.5
Hma1.2p1_0403F.1_g145230 Hydrangea macrophylla HOM05D007345 ORTHO05D009277 1.2e-39 169.1 214 42.5
C05p48720 Brassica napus HOM05D007345 ORTHO05D009277 1.5e-39 168.7 215 40.0
BolC5t33608H Brassica oleracea HOM05D007345 ORTHO05D009277 1.5e-39 168.7 215 40.0
PGR083G0906 Punica granatum HOM05D007345 ORTHO05D009277 2.0e-39 168.3 214 42.5
arahy.Tifrunner.gnm1.ann1.TRXD5D Arachis hypogaea HOM05D007345 ORTHO05D009277 2.6e-39 167.9 203 41.9
arahy.Tifrunner.gnm1.ann1.X12NHK Arachis hypogaea HOM05D007345 ORTHO05D009277 2.6e-39 167.9 203 41.9
Carub.0003s1739 Capsella rubella HOM05D007345 ORTHO05D009277 2.6e-39 167.9 215 40.9
Eucgr.H00620 Eucalyptus grandis HOM05D007345 ORTHO05D009277 2.6e-39 167.9 218 40.4
AT3G17670 Arabidopsis thaliana HOM05D007345 ORTHO05D009277 3.4e-39 167.5 215 41.9
Aa31LG8G4530 Aethionema arabicum HOM05D007345 ORTHO05D009277 4.5e-39 167.2 217 39.6
EL10Ac8g19438 Beta vulgaris HOM05D007345 ORTHO05D009277 7.6e-39 166.4 211 40.8
TWI60G0762 Tripterygium wilfordii HOM05D007345 ORTHO05D009277 1.7e-38 165.2 222 39.6
BcaB06g25825 Brassica carinata HOM05D007345 ORTHO05D009277 2.2e-38 164.9 215 39.1
Cc00_g18760 Coffea canephora HOM05D007345 ORTHO05D009277 2.2e-38 164.9 215 40.0
Migut.D02059 Erythranthe guttata HOM05D007345 ORTHO05D009277 2.2e-38 164.9 225 39.1
Atru.chr9.353 Acer truncatum HOM05D007345 ORTHO05D009277 2.9e-38 164.5 219 37.4
CsaV3_1G005120 Cucumis sativus L. HOM05D007345 ORTHO05D009277 2.9e-38 164.5 211 39.3
MD06G1238300 Malus domestica HOM05D007345 ORTHO05D009277 2.9e-38 164.5 220 41.4
Nitab4.5_0000782g0230 Nicotiana tabacum HOM05D000001 ORTHO05D000003 2.9e-38 164.5 209 39.7
A05p32180 Brassica napus HOM05D007345 ORTHO05D009277 3.8e-38 164.1 215 39.1
CAN.G1909.2 Capsicum annuum HOM05D007345 ORTHO05D009277 3.8e-38 164.1 221 38.9
SalBow1G0799 Salvia bowleyana HOM05D007345 ORTHO05D009277 3.8e-38 164.1 229 38.4
Nitab4.5_0004612g0070 Nicotiana tabacum HOM05D000066 ORTHO05D000003 4.9e-38 163.7 205 39.5
CANSAT01G1136 Cannabis sativa HOM05D007345 ORTHO05D009277 6.4e-38 163.3 209 41.1
Sopen03g029180 Solanum pennellii HOM05D007345 ORTHO05D009277 8.4e-38 162.9 205 41.0
Solyc03g098440.4 Solanum lycopersicum HOM05D007345 ORTHO05D009277 1.4e-37 162.2 205 40.5
LjContig00484g0026271 Lotus japonicus HOM05D007345 ORTHO05D009277 1.9e-37 161.8 220 39.5
Medtr3g015440 Medicago truncatula HOM05D007345 ORTHO05D009277 2.4e-37 161.4 207 43.0
Lsat_1_v5_gn_3_108980 Lactuca sativa HOM05D007345 ORTHO05D009277 3.2e-37 161.0 208 38.9
Peaxi162Scf00171g00331 Petunia axillaris HOM05D007345 ORTHO05D009277 3.2e-37 161.0 201 40.8
Ca_17167_v3 Cicer arietinum L. HOM05D007345 ORTHO05D009277 4.2e-37 160.6 202 41.6
Thhalv10021436m.g Eutrema salsugineum HOM05D007345 ORTHO05D009277 5.4e-37 160.2 217 40.1
Lalb_Chr09g0330151 Lupinus albus HOM05D007345 ORTHO05D009277 5.4e-37 160.2 211 39.8
Manes.02G214200 Manihot esculenta HOM05D007345 ORTHO05D009277 7.1e-37 159.8 220 37.7
Haze_18424 Corylus avellana HOM05D007345 ORTHO05D009277 2.7e-36 157.9 204 39.7
Nn4g24918 Nelumbo nucifera HOM05D007345 ORTHO05D009277 2.7e-36 157.9 165 47.3
CSS0049327 Camellia sinensis var. sinensis HOM05D007345 ORTHO05D009277 3.5e-36 157.5 214 41.6
Prupe.5G242200 Prunus persica HOM05D007345 ORTHO05D009277 3.0e-35 154.5 232 38.4
AUR62034041 Chenopodium quinoa HOM05D007345 ORTHO05D009277 1.1e-34 152.5 219 39.3
Os04g0674100 Oryza sativa ssp. japonica HOM05D007345 ORTHO05D009277 7.4e-34 149.8 219 39.3
ClCG04G012580 Citrullus lanatus HOM05D007345 ORTHO05D009277 9.6e-34 149.4 241 35.7
Zm00001eb066530 Zea mays HOM05D007345 ORTHO05D009277 1.3e-33 149.1 214 39.3
ATR0618G142 Amborella trichopoda HOM05D007345 ORTHO05D009277 2.1e-33 148.3 205 37.1
SEGI_13495 Sequoiadendron giganteum HOM05D007345 ORTHO05D009277 1.1e-32 146.0 169 43.2
VMungo0251G1758 Vigna mungo HOM05D007345 ORTHO05D009277 9.9e-31 139.4 225 37.3
Ah.09g231730 Amaranthus hybridus HOM05D007345 ORTHO05D009277 4.2e-29 134.0 215 37.2
DCAR_023255 Daucus carota HOM05D007345 ORTHO05D009277 5.1e-27 127.1 182 37.4
Cre16.g674534 Chlamydomonas reinhardtii HOM05D007345 ORTHO05D009277 2.5e-26 124.8 196 33.7
vmacro16392 Vaccinium macrocarpon HOM05D007345 ORTHO05D009277 8.1e-25 119.8 130 46.9
PGSC0003DMG400010180 Solanum tuberosum HOM05D007345 ORTHO05D009277 1.8e-24 118.6 300 27.0
PSO063G1698 Papaver somniferum HOM05D007345 ORTHO05D009277 7.6e-23 113.2 212 30.2
Psat7g000360 Pisum sativum HOM05D007345 ORTHO05D009277 1.3e-22 112.5 130 46.2
ECA240G0690 Erigeron canadensis HOM05D007345 ORTHO05D009277 1.7e-22 112.1 173 35.3
MELO3C001950.2 Cucumis melo HOM05D007345 ORTHO05D009277 3.8e-22 110.9 133 42.1
Lj9C350T12 Lonicera japonica HOM05D000001 ORTHO05D009373 4.2e-21 107.5 150 41.3
MSTRG.9709 Avicennia marina HOM05D007345 ORTHO05D009277 7.9e-20 103.2 113 45.1
CAN.G1635.20 Capsicum annuum HOM05D007345 ORTHO05D009277 2.3e-19 101.7 216 30.6
Zm00001eb184330 Zea mays HOM05D007345 ORTHO05D009277 8.2e-17 93.2 158 35.4
FAN13G2172 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.4e-16 92.4 125 39.2
PRCOL_00001636 Prasinoderma coloniale HOM05D007345 ORTHO05D009277 1.3e-09 69.3 54 48.1
QL02p102882 Quercus lobata HOM05D002462 ORTHO05D002893 1.4e-08 65.9 92 39.1
Eucgr.H00622 Eucalyptus grandis HOM05D007345 ORTHO05D009277 1.8e-08 65.5 96 32.3
AagrBONN_evm.TU.Sc2ySwM_368.3405 Anthoceros agrestis HOM05D001789 ORTHO05D001755 1.5e-07 62.4 108 36.1
Glyma.02G004400 Glycine max HOM05D006451 ORTHO05D007680 4.5e-07 60.8 123 30.1
PRCOL_00001926 Prasinoderma coloniale HOM05D002462 ORTHO05D049118 1.3e-06 59.3 117 35.0
Zm00001eb248730 Zea mays HOM05D002462 ORTHO05D002893 2.2e-06 58.5 117 31.6
A09p63960 Brassica napus HOM05D002462 ORTHO05D002893 2.9e-06 58.2 113 30.1
BcaC07g41712 Brassica carinata HOM05D002462 ORTHO05D002893 3.8e-06 57.8 96 31.2
C08p47480 Brassica napus HOM05D002462 ORTHO05D002893 3.8e-06 57.8 96 31.2
Lj6g0024617 Lotus japonicus HOM05D006451 ORTHO05D007680 3.8e-06 57.8 123 29.3
Lalb_Chr01g0020941 Lupinus albus HOM05D006451 ORTHO05D007680 3.8e-06 57.8 124 29.0
Zm00001eb186100 Zea mays HOM05D002462 ORTHO05D002893 3.8e-06 57.8 117 31.6
Os02g0644100 Oryza sativa ssp. japonica HOM05D002462 ORTHO05D002893 5.0e-06 57.4 97 35.1
BolC8t52289H Brassica oleracea HOM05D002462 ORTHO05D002893 6.5e-06 57.0 97 30.9
BraA09t41742Z Brassica rapa HOM05D002462 ORTHO05D002893 6.5e-06 57.0 113 29.2
Glyma.10G003800 Glycine max HOM05D006451 ORTHO05D007680 6.5e-06 57.0 123 28.5


User provided reference genes

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