Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 2.3e-213 745.3 386 100.0
CBR_g46605 Chara braunii HOM05D004214 ORTHO05D004963 3.0e-80 303.1 158 98.7
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 5.9e-36 156.0 174 44.3
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 8.8e-32 142.1 175 42.3
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 2.8e-30 137.1 172 43.0
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 6.3e-30 136.0 173 42.8
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 8.2e-30 135.6 189 39.2
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 8.2e-30 135.6 189 39.2
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 1.4e-29 134.8 172 39.5
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 1.8e-29 134.4 168 43.5
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 2.4e-29 134.0 172 41.9
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 3.1e-29 133.7 162 44.4
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 5.3e-29 132.9 186 38.2
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 5.3e-29 132.9 172 40.7
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 5.3e-29 132.9 172 40.7
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 5.3e-29 132.9 162 44.4
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 7.0e-29 132.5 172 41.3
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 9.1e-29 132.1 234 35.5
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 1.6e-28 131.3 183 39.3
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 1.6e-28 131.3 172 40.7
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 2.0e-28 131.0 182 40.7
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 2.0e-28 131.0 178 39.3
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 5.9e-28 129.4 187 38.0
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 5.9e-28 129.4 159 42.1
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 1.0e-27 128.6 172 41.9
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 1.7e-27 127.9 178 38.2
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 2.2e-27 127.5 172 39.0
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 2.2e-27 127.5 143 47.6
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 2.9e-27 127.1 201 37.8
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 3.8e-27 126.7 173 39.3
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 3.8e-27 126.7 173 39.3
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 3.8e-27 126.7 192 37.0
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 3.8e-27 126.7 173 38.7
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 5.0e-27 126.3 173 40.5
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 5.0e-27 126.3 173 39.3
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 5.0e-27 126.3 188 37.2
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 6.5e-27 125.9 174 39.7
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 1.1e-26 125.2 179 38.5
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 1.5e-26 124.8 173 39.3
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 1.5e-26 124.8 173 38.7
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 1.5e-26 124.8 142 47.9
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.9e-26 124.4 205 35.6
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 1.9e-26 124.4 163 42.3
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 1.9e-26 124.4 172 38.4
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 3.2e-26 123.6 185 38.4
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 3.2e-26 123.6 174 38.5
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 3.2e-26 123.6 203 36.0
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 4.2e-26 123.2 173 38.7
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 4.2e-26 123.2 172 41.3
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 4.2e-26 123.2 211 35.5
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 4.2e-26 123.2 198 36.9
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 4.2e-26 123.2 173 37.0
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 4.2e-26 123.2 203 34.5
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 5.5e-26 122.9 210 34.8
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 5.5e-26 122.9 173 39.3
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 5.5e-26 122.9 196 37.8
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 5.5e-26 122.9 203 35.0
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 7.2e-26 122.5 220 35.0
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 9.4e-26 122.1 196 37.2
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 9.4e-26 122.1 190 36.8
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 1.2e-25 121.7 174 39.7
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 1.6e-25 121.3 173 37.6
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 1.6e-25 121.3 174 37.9
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 2.1e-25 120.9 174 37.9
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 2.7e-25 120.6 174 39.1
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 2.7e-25 120.6 174 39.1
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 3.6e-25 120.2 189 37.0
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 3.6e-25 120.2 174 39.1
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 4.7e-25 119.8 172 37.2
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 6.1e-25 119.4 174 37.9
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 8.0e-25 119.0 167 35.3
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.0e-24 118.6 228 33.3
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.0e-24 118.6 228 33.3
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.8e-24 117.9 174 38.5
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 2.3e-24 117.5 175 38.9
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 4.0e-24 116.7 174 38.5
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 4.0e-24 116.7 172 37.8
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 5.2e-24 116.3 165 35.8
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 1.5e-23 114.8 169 36.1
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 3.3e-23 113.6 170 37.1
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 1.7e-22 111.3 162 38.3
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 8.2e-22 109.0 166 34.9
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 1.8e-21 107.8 203 33.5
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 7.0e-21 105.9 170 35.9
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.2e-20 105.1 159 37.7
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.2e-20 105.1 241 30.3
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 2.7e-20 104.0 171 36.3
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 4.5e-20 103.2 178 34.8
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 3.8e-19 100.1 252 30.6
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 5.0e-19 99.8 190 34.7
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 8.5e-19 99.0 172 36.0
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 1.5e-18 98.2 201 33.3
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 3.2e-18 97.1 158 38.0
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 9.4e-18 95.5 186 33.9
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 1.2e-17 95.1 189 33.3
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 2.1e-17 94.4 250 28.0
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 3.6e-17 93.6 108 45.4
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 1.0e-16 92.0 257 27.6
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 8.8e-16 89.0 149 32.9
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 4.4e-15 86.7 168 32.1
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 4.8e-14 83.2 174 28.7
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 4.8e-14 83.2 176 30.1
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 6.3e-14 82.8 174 29.9
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 8.3e-14 82.4 70 50.0
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 8.3e-14 82.4 171 28.1
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 1.4e-13 81.6 173 29.5
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 3.1e-13 80.5 172 32.0
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 7.0e-13 79.3 173 28.9
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 7.0e-13 79.3 189 27.5
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 1.6e-12 78.2 174 28.7
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 4.5e-12 76.6 140 32.9
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 4.5e-12 76.6 179 26.8
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 7.7e-12 75.9 173 26.6
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 1.0e-11 75.5 165 26.7
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 1.3e-11 75.1 239 24.3
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 2.3e-11 74.3 154 31.2
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 2.9e-11 73.9 210 25.2
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 2.9e-11 73.9 175 29.1
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 3.8e-11 73.6 128 34.4
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 5.0e-11 73.2 134 30.6
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 5.0e-11 73.2 128 34.4
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 6.6e-11 72.8 168 26.2
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 8.6e-11 72.4 127 34.6
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 1.1e-10 72.0 175 29.7
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 2.5e-10 70.9 172 29.7
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 3.3e-10 70.5 173 27.7
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 3.3e-10 70.5 180 31.1
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 4.2e-10 70.1 161 28.6
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 5.5e-10 69.7 70 42.9
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 5.5e-10 69.7 127 33.9
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 7.2e-10 69.3 93 40.9
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 7.2e-10 69.3 70 42.9
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 7.2e-10 69.3 175 27.4
Os10g0580600 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.6e-09 68.2 51 58.8
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 4.7e-09 66.6 168 28.0
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 4.7e-09 66.6 170 27.6
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 6.1e-09 66.2 174 29.9
AagrBONN_evm.TU.Sc2ySwM_362.234 Anthoceros agrestis HOM05D019249 ORTHO05D019657 8.0e-09 65.9 203 29.6
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 8.0e-09 65.9 121 33.9
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 1.4e-08 65.1 166 25.3
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 1.4e-08 65.1 202 27.2
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 4.0e-08 63.5 162 28.4
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 8.9e-08 62.4 69 42.0
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 8.9e-08 62.4 162 27.2
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 1.2e-07 62.0 180 23.3
Pp3c1_32760 Physcomitrium patens HOM05D019249 ORTHO05D019657 1.5e-07 61.6 266 25.6
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 2.0e-07 61.2 179 27.4
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 3.4e-07 60.5 191 25.7
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 3.4e-07 60.5 119 31.9
Aa31LG9G16510 Aethionema arabicum HOM05D004214 ORTHO05D004963 5.7e-07 59.7 45 55.6
BolC9t55376H Brassica oleracea HOM05D004214 ORTHO05D004963 7.5e-07 59.3 64 43.8
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 7.5e-07 59.3 190 25.3
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.7e-06 58.2 179 25.1
Mapoly0024s0002 Marchantia polymorpha HOM05D019249 ORTHO05D019657 2.2e-06 57.8 181 26.0
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 4.9e-06 56.6 191 25.1
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 4.9e-06 56.6 45 53.3


User provided reference genes

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