Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 0.0e+00 1291.6 684 100.0
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 1.5e-111 407.9 643 38.6
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 3.2e-109 400.2 642 39.9
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 3.9e-107 393.3 646 38.9
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 1.1e-106 391.7 646 38.5
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.2e-105 388.3 643 38.6
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 2.1e-105 387.5 646 37.2
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 2.8e-105 387.1 647 36.5
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 6.2e-105 386.0 643 36.7
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 4.0e-104 383.3 643 37.6
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 1.2e-103 381.7 643 36.9
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 2.6e-103 380.6 643 36.7
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 7.6e-103 379.0 643 37.9
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 9.9e-103 378.6 643 36.2
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 9.9e-103 378.6 643 37.2
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 1.3e-102 378.3 666 36.8
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 1.3e-102 378.3 643 37.8
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 1.1e-101 375.2 655 36.0
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 1.4e-101 374.8 645 35.8
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 3.2e-101 373.6 650 36.9
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 1.2e-100 371.7 643 37.2
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 1.6e-100 371.3 643 36.9
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 2.1e-100 370.9 647 36.5
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 2.1e-100 370.9 643 36.1
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 3.5e-100 370.2 644 36.6
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 6.0e-100 369.4 643 36.9
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 6.0e-100 369.4 648 36.7
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 1.0e-99 368.6 643 36.4
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 1.0e-99 368.6 642 36.6
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 1.0e-99 368.6 643 36.2
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 1.3e-99 368.2 643 35.5
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 1.3e-99 368.2 647 35.5
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 1.7e-99 367.9 643 37.0
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 1.7e-99 367.9 643 37.2
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 1.7e-99 367.9 643 36.4
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 2.3e-99 367.5 643 36.7
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 1.1e-98 365.2 643 35.9
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 1.5e-98 364.8 650 36.5
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 1.5e-98 364.8 643 36.9
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 1.5e-98 364.8 643 36.4
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 1.9e-98 364.4 643 35.5
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 1.9e-98 364.4 642 36.4
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 4.3e-98 363.2 650 36.2
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 5.6e-98 362.8 644 35.7
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 5.6e-98 362.8 643 36.5
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 9.6e-98 362.1 643 35.8
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 1.3e-97 361.7 650 36.2
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 1.6e-97 361.3 644 36.3
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 2.1e-97 360.9 661 35.7
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 2.8e-97 360.5 644 36.8
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 2.8e-97 360.5 643 36.4
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 1.8e-96 357.8 650 36.0
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 2.4e-96 357.5 642 37.5
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 3.1e-96 357.1 661 35.4
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 9.0e-96 355.5 650 35.7
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 2.0e-95 354.4 644 35.9
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 3.4e-95 353.6 616 35.1
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 5.8e-95 352.8 643 35.9
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 5.8e-95 352.8 654 35.2
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.3e-94 351.7 680 34.9
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 1.3e-94 351.7 643 35.8
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 2.9e-94 350.5 676 34.6
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 3.8e-94 350.1 680 34.9
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 6.4e-94 349.4 683 34.1
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 8.4e-94 349.0 647 34.6
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 8.4e-94 349.0 647 34.6
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 1.9e-93 347.8 643 35.8
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 1.9e-93 347.8 648 35.2
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 2.4e-93 347.4 651 34.7
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 7.1e-93 345.9 647 35.2
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 4.6e-92 343.2 647 35.2
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 4.6e-92 343.2 643 34.5
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 6.0e-92 342.8 656 36.1
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 1.0e-91 342.0 669 37.1
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 1.3e-91 341.7 648 34.7
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 1.3e-91 341.7 639 37.4
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 1.3e-91 341.7 650 35.4
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 5.1e-91 339.7 643 34.1
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 6.7e-91 339.3 643 34.4
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 1.1e-90 338.6 643 35.5
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 2.5e-90 337.4 640 35.5
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 3.3e-90 337.0 643 34.8
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 8.1e-89 332.4 634 35.2
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 4.0e-88 330.1 643 33.9
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 1.2e-87 328.6 643 33.1
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 1.5e-87 328.2 643 33.1
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 2.0e-87 327.8 654 33.8
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 2.2e-86 324.3 642 34.1
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 1.6e-84 318.2 643 33.6
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 4.6e-84 316.6 642 33.6
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 4.6e-84 316.6 642 33.6
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 6.0e-84 316.2 666 33.5
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 6.7e-83 312.8 519 38.0
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 1.2e-79 302.0 642 32.4
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 2.9e-78 297.4 320 48.4
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 1.9e-77 294.7 643 31.1
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 2.5e-77 294.3 292 50.3
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 4.2e-77 293.5 643 32.5
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 4.6e-76 290.0 643 32.8
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 7.9e-76 289.3 677 31.5
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 6.7e-75 286.2 547 33.5
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 4.8e-73 280.0 652 30.7
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 9.3e-69 265.8 282 47.2
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 9.3e-69 265.8 663 30.3
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 2.7e-68 264.2 643 31.7
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 3.3e-66 257.3 664 33.6
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 5.7e-66 256.5 643 33.3
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 1.5e-63 248.4 676 28.7
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 1.8e-59 235.0 550 31.5
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 3.0e-59 234.2 271 45.0
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 1.6e-52 211.8 335 37.3
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 2.0e-50 204.9 644 28.1
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 2.2e-49 201.4 625 27.8
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 4.1e-40 170.6 429 32.2
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 4.5e-39 167.2 195 43.6
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 8.5e-38 162.9 303 33.0
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 1.2e-34 152.5 258 33.3
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 5.5e-29 133.7 411 27.7
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 1.6e-28 132.1 650 23.1
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 4.7e-28 130.6 95 62.1
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 1.0e-27 129.4 512 26.4
Cfa022899 Carpinus fangiana HOM05D004772 ORTHO05D006892 9.2e-24 116.3 327 24.8
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 2.3e-19 101.7 151 40.4
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 1.5e-18 99.0 167 36.5
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 1.3e-17 95.9 188 31.4
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.7e-17 95.5 95 48.4
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 5.4e-16 90.5 94 48.9
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 2.3e-11 75.1 62 59.7
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 2.0e-07 62.0 60 53.3
MBI13_g31547_MAGBIO Magnolia biondii HOM05D000810 ORTHO05D003737 2.3e-06 58.5 281 22.1
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 8.6e-06 56.6 52 51.9


User provided reference genes

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