Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g50887 Chara braunii HOM05D004324 ORTHO05D004840 1.7e-188 662.5 335 100.0
SEGI_09298 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 1.9e-139 499.6 310 79.7
BraA03t12035Z Brassica rapa HOM05D004324 ORTHO05D004840 1.3e-135 486.9 330 73.3
A03p28290 Brassica napus HOM05D004324 ORTHO05D004840 2.8e-135 485.7 330 73.0
BolC3t15731H Brassica oleracea HOM05D004324 ORTHO05D004840 2.8e-135 485.7 330 73.3
C03p34220 Brassica napus HOM05D004324 ORTHO05D004840 6.3e-135 484.6 330 73.0
Mapoly0082s0038 Marchantia polymorpha HOM05D004324 ORTHO05D004840 6.3e-135 484.6 310 76.8
SMO367G0287 Selaginella moellendorffii HOM05D004324 ORTHO05D004840 6.3e-135 484.6 333 73.0
Sp6g08900 Schrenkiella parvula HOM05D004324 ORTHO05D004840 1.8e-134 483.0 325 73.2
CiPaw.01G263900 Carya illinoinensis HOM05D004324 ORTHO05D004840 2.4e-134 482.6 312 75.3
BcaC01g04748 Brassica carinata HOM05D004324 ORTHO05D004840 3.1e-134 482.3 330 72.7
CARHR259850 Cardamine hirsuta HOM05D004324 ORTHO05D004840 4.1e-134 481.9 328 72.6
CsaV3_6G006290 Cucumis sativus L. HOM05D004324 ORTHO05D004840 4.1e-134 481.9 312 76.0
Eucgr.E01445 Eucalyptus grandis HOM05D004324 ORTHO05D004840 4.1e-134 481.9 312 75.6
AT4G08900 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 5.3e-134 481.5 336 71.4
BcaB01g02843 Brassica carinata HOM05D004324 ORTHO05D004840 5.3e-134 481.5 336 72.0
AL6G41660 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 9.1e-134 480.7 336 71.4
Sc26g0001240 Simmondsia chinensis HOM05D004324 ORTHO05D004840 9.1e-134 480.7 322 74.5
COL.COLO4_24610 Corchorus olitorius HOM05D004324 ORTHO05D004840 1.2e-133 480.3 312 75.0
Carub.0006s2738 Capsella rubella HOM05D004324 ORTHO05D004840 2.6e-133 479.2 325 72.9
Thhalv10028793m.g Eutrema salsugineum HOM05D004324 ORTHO05D004840 2.6e-133 479.2 312 75.0
Lsat_1_v5_gn_4_43080 Lactuca sativa HOM05D004324 ORTHO05D004840 3.4e-133 478.8 312 74.7
THA.LOC104826515 Tarenaya hassleriana HOM05D004324 ORTHO05D004840 3.4e-133 478.8 312 75.0
ClCG06G000480 Citrullus lanatus HOM05D004324 ORTHO05D004840 4.5e-133 478.4 312 75.0
Lalb_Chr12g0208141 Lupinus albus HOM05D004324 ORTHO05D004840 7.7e-133 477.6 322 73.0
QL08p052832 Quercus lobata HOM05D004324 ORTHO05D004840 1.0e-132 477.2 314 75.2
Solyc01g091160.4 Solanum lycopersicum HOM05D004324 ORTHO05D004840 1.0e-132 477.2 312 74.7
Sopen01g036910 Solanum pennellii HOM05D004324 ORTHO05D004840 1.0e-132 477.2 312 74.7
Dinv32365 Davidia involucrata HOM05D004324 ORTHO05D004840 1.3e-132 476.9 312 75.0
FAN01G0081 Fragaria x ananassa HOM05D004324 ORTHO05D004840 1.3e-132 476.9 310 74.8
Os04g0106300 Oryza sativa ssp. japonica HOM05D004324 ORTHO05D004840 1.3e-132 476.9 327 71.6
Aa31LG9G14610 Aethionema arabicum HOM05D004324 ORTHO05D004840 2.2e-132 476.1 312 74.0
RcHm_v2.0_Chr1g0349771 Rosa chinensis HOM05D004324 ORTHO05D004840 2.2e-132 476.1 310 74.8
SalBow5G2819 Salvia bowleyana HOM05D004324 ORTHO05D004840 2.2e-132 476.1 312 74.0
ECA234G2725 Erigeron canadensis HOM05D004324 ORTHO05D004840 2.9e-132 475.7 312 74.0
Migut.B01616 Erythranthe guttata HOM05D004324 ORTHO05D004840 2.9e-132 475.7 312 74.0
FAN03G2758 Fragaria x ananassa HOM05D004324 ORTHO05D004840 2.9e-132 475.7 310 74.8
FAN06G1729 Fragaria x ananassa HOM05D004324 ORTHO05D004840 2.9e-132 475.7 310 74.8
FAN06G4220 Fragaria x ananassa HOM05D004324 ORTHO05D004840 2.9e-132 475.7 310 74.8
CAN.G388.33 Capsicum annuum HOM05D004324 ORTHO05D004840 3.8e-132 475.3 312 74.4
CANSAT56G0022 Cannabis sativa HOM05D004324 ORTHO05D004840 5.0e-132 474.9 323 71.8
EL10Ac1g00868 Beta vulgaris HOM05D004324 ORTHO05D004840 6.5e-132 474.6 312 74.0
Peaxi162Scf00013g03018 Petunia axillaris HOM05D004324 ORTHO05D004840 6.5e-132 474.6 312 74.4
Sed0016777 Sechium edule HOM05D004324 ORTHO05D004840 6.5e-132 474.6 312 74.7
HanXRQChr16g0519961 Helianthus annuus HOM05D004324 ORTHO05D004840 8.5e-132 474.2 312 74.7
SGA_v2.0_scaffold153G36989 Striga asiatica HOM05D004324 ORTHO05D004840 8.5e-132 474.2 336 70.5
Ciclev10021006m.g Citrus clementina HOM05D004324 ORTHO05D004840 1.1e-131 473.8 312 73.7
Hma1.2p1_0442F.1_g153860 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 1.1e-131 473.8 333 71.2
AUR62004190 Chenopodium quinoa HOM05D004324 ORTHO05D004840 1.4e-131 473.4 310 73.9
Nitab4.5_0000457g0100 Nicotiana tabacum HOM05D004324 ORTHO05D004840 1.9e-131 473.0 312 73.7
Manes.01G267300 Manihot esculenta HOM05D004324 ORTHO05D004840 2.5e-131 472.6 312 74.7
Thecc.08G173500 Theobroma cacao HOM05D004324 ORTHO05D004840 2.5e-131 472.6 321 72.9
CSS0015452 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 3.2e-131 472.2 312 74.0
CSS0042374 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 3.2e-131 472.2 312 74.0
MD07G1119200 Malus domestica HOM05D004324 ORTHO05D004840 3.2e-131 472.2 312 74.4
PSO782G5694 Papaver somniferum HOM05D004324 ORTHO05D004840 3.2e-131 472.2 312 73.1
Lj3g0015076 Lotus japonicus HOM05D004324 ORTHO05D004840 4.2e-131 471.9 331 70.1
vmacro13417 Vaccinium macrocarpon HOM05D004324 ORTHO05D004840 4.2e-131 471.9 327 70.3
Duzib268G1605 Durio zibethinus HOM05D004324 ORTHO05D004840 5.5e-131 471.5 336 70.2
Actinidia12245 Actinidia chinensis HOM05D004324 ORTHO05D004840 7.2e-131 471.1 312 74.0
Atru.chr5.282 Acer truncatum HOM05D004324 ORTHO05D004840 9.4e-131 470.7 321 72.3
ATR0665G432 Amborella trichopoda HOM05D004324 ORTHO05D004840 1.2e-130 470.3 312 73.1
Cc02_g24110 Coffea canephora HOM05D004324 ORTHO05D004840 1.2e-130 470.3 312 74.0
Nitab4.5_0010616g0050 Nicotiana tabacum HOM05D004324 ORTHO05D004840 1.2e-130 470.3 312 73.4
Manes.05G047100 Manihot esculenta HOM05D004324 ORTHO05D004840 1.6e-130 469.9 312 74.4
Nn1g01122 Nelumbo nucifera HOM05D004324 ORTHO05D004840 1.6e-130 469.9 322 72.4
PGR042G0702 Punica granatum HOM05D004324 ORTHO05D004840 1.6e-130 469.9 312 73.4
Aqoxy7G00682 Aquilegia oxysepala HOM05D004324 ORTHO05D004840 2.1e-130 469.5 312 73.4
MSTRG.17174 Avicennia marina HOM05D004324 ORTHO05D004840 2.1e-130 469.5 312 72.4
Cpa.g.sc145.18 Carica papaya HOM05D004324 ORTHO05D004840 2.1e-130 469.5 312 73.4
AUR62013655 Chenopodium quinoa HOM05D004324 ORTHO05D004840 2.1e-130 469.5 310 73.5
Gorai.009G265900 Gossypium raimondii HOM05D004324 ORTHO05D004840 2.7e-130 469.2 321 72.6
Sc26g0001250 Simmondsia chinensis HOM05D004324 ORTHO05D004840 3.6e-130 468.8 312 73.7
TPR.G7599 Trifolium pratense HOM05D004324 ORTHO05D004840 3.6e-130 468.8 322 72.0
GSVIVG01027662001 Vitis vinifera HOM05D004324 ORTHO05D004840 3.6e-130 468.8 312 73.1
Psat0s3070g0160 Pisum sativum HOM05D004324 ORTHO05D004840 4.6e-130 468.4 312 72.8
Prupe.2G142300 Prunus persica HOM05D004324 ORTHO05D004840 4.6e-130 468.4 312 72.8
Gohir.D05G254400 Gossypium hirsutum HOM05D004324 ORTHO05D004840 6.1e-130 468.0 321 72.3
CSS0002473 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 7.9e-130 467.6 312 72.8
Pp3c5_2190 Physcomitrium patens HOM05D004324 ORTHO05D004840 7.9e-130 467.6 336 68.8
TWI59G0845 Tripterygium wilfordii HOM05D004324 ORTHO05D004840 7.9e-130 467.6 312 72.1
HPP92_007375 Vanilla planifolia HOM05D004324 ORTHO05D004840 1.0e-129 467.2 327 70.3
PSO478G0881 Papaver somniferum HOM05D004324 ORTHO05D004840 1.4e-129 466.8 312 72.4
Glyma.17G131300 Glycine max HOM05D004324 ORTHO05D004840 1.8e-129 466.5 312 73.4
Phvul.010G081600 Phaseolus vulgaris HOM05D004324 ORTHO05D004840 1.8e-129 466.5 312 73.4
TAR375G0703 Trochodendron aralioides HOM05D004324 ORTHO05D004840 1.8e-129 466.5 333 70.3
Potri.002G146200 Populus trichocarpa HOM05D004324 ORTHO05D004840 2.3e-129 466.1 312 72.8
Duzib177G0253 Durio zibethinus HOM05D004324 ORTHO05D004840 3.0e-129 465.7 321 71.7
Glyma.01G140200 Glycine max HOM05D004324 ORTHO05D004840 5.1e-129 464.9 312 72.8
Thecc.08G173700 Theobroma cacao HOM05D004324 ORTHO05D004840 5.1e-129 464.9 322 70.8
AT4G08870 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 6.7e-129 464.5 312 72.1
CDE04G0300 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 6.7e-129 464.5 322 71.4
SHI13535 Sapria himalayana HOM05D004324 ORTHO05D004840 6.7e-129 464.5 322 71.1
Solyc01g091170.3 Solanum lycopersicum HOM05D004324 ORTHO05D004840 6.7e-129 464.5 310 73.9
Sopen01g036920 Solanum pennellii HOM05D004324 ORTHO05D004840 6.7e-129 464.5 310 73.9
Carub.0006s2736 Capsella rubella HOM05D004324 ORTHO05D004840 1.1e-128 463.8 312 71.5
Ca_19938_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 1.5e-128 463.4 322 71.4
Potri.014G067700 Populus trichocarpa HOM05D004324 ORTHO05D004840 2.0e-128 463.0 312 72.1
RcHm_v2.0_Chr1g0349751 Rosa chinensis HOM05D004324 ORTHO05D004840 2.6e-128 462.6 324 70.7
Glyma.03G028000 Glycine max HOM05D004324 ORTHO05D004840 9.7e-128 460.7 312 72.1
Hund27368 Selenicereus undatus HOM05D004324 ORTHO05D004840 1.3e-127 460.3 303 72.9
Lj3g0002034 Lotus japonicus HOM05D004324 ORTHO05D004840 2.8e-127 459.1 312 72.8
DCAR_008551 Daucus carota HOM05D004324 ORTHO05D004840 6.3e-127 458.0 313 72.2
unitig_899.g15094 Utricularia gibba HOM05D004324 ORTHO05D004840 1.8e-126 456.4 303 72.9
Rhsim07G0029000 Rhododendron simsii HOM05D004324 ORTHO05D004840 2.4e-126 456.1 345 66.7
Haze_16793 Corylus avellana HOM05D004324 ORTHO05D004840 6.9e-126 454.5 359 64.3
Oeu055504.4 Olea europaea HOM05D004324 ORTHO05D004840 4.5e-125 451.8 349 66.2
Lj3g0012371 Lotus japonicus HOM05D004324 ORTHO05D004840 5.0e-124 448.4 314 71.0
Lj3g0008609 Lotus japonicus HOM05D004324 ORTHO05D004840 8.5e-124 447.6 312 70.5
CiPaw.02G169300 Carya illinoinensis HOM05D004324 ORTHO05D004840 9.4e-123 444.1 303 72.9
arahy.Tifrunner.gnm1.ann1.2VF8XD Arachis hypogaea HOM05D004324 ORTHO05D004840 1.6e-122 443.4 344 66.9
Ah.05g174550 Amaranthus hybridus HOM05D004324 ORTHO05D004840 2.1e-122 443.0 312 68.3
HanXRQChr16g0519941 Helianthus annuus HOM05D004324 ORTHO05D004840 6.7e-121 438.0 312 67.6
Medtr4g024960 Medicago truncatula HOM05D004324 ORTHO05D004840 4.8e-119 431.8 312 68.3
arahy.Tifrunner.gnm1.ann1.J6F3FE Arachis hypogaea HOM05D004324 ORTHO05D004840 8.2e-119 431.0 368 62.5
TPR.G7597 Trifolium pratense HOM05D004324 ORTHO05D004840 5.0e-116 421.8 316 67.1
Lj7A531T56 Lonicera japonica HOM05D004324 ORTHO05D004840 2.1e-114 416.4 322 66.5
Psat7g231720 Pisum sativum HOM05D004324 ORTHO05D004840 1.7e-108 396.7 316 62.0
SEGI_04392 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 7.0e-102 374.8 249 75.5
MELO3C022492.2 Cucumis melo HOM05D004324 ORTHO05D004840 2.3e-100 369.8 238 76.5
COL.COLO4_24608 Corchorus olitorius HOM05D004324 ORTHO05D004840 3.7e-95 352.4 312 58.3
Sed0023731 Sechium edule HOM05D004324 ORTHO05D004840 1.2e-90 337.4 227 72.7
Atru.chr5.284 Acer truncatum HOM05D004324 ORTHO05D004840 1.4e-89 334.0 236 70.8
Dinv43690 Davidia involucrata HOM05D004324 ORTHO05D004840 1.7e-87 327.0 312 56.1
Hma1.2p1_0375F.1_g138670 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 1.8e-86 323.6 245 66.5
Psat6g218040 Pisum sativum HOM05D004324 ORTHO05D004840 1.7e-84 317.0 303 52.8
Zm00001eb418690 Zea mays HOM05D004324 ORTHO05D004840 1.1e-83 314.3 206 73.8
arahy.Tifrunner.gnm1.ann1.J17N2W Arachis hypogaea HOM05D004324 ORTHO05D004840 2.1e-82 310.1 285 56.8
AagrBONN_evm.TU.Sc2ySwM_368.1743 Anthoceros agrestis HOM05D004324 ORTHO05D004840 8.0e-82 308.1 208 74.0
Medtr4g024940 Medicago truncatula HOM05D004324 ORTHO05D004840 6.8e-81 305.1 216 70.8
FvH4_7g11450 Fragaria vesca HOM05D004324 ORTHO05D004840 8.3e-79 298.1 192 76.0
MBI04_g35670_MAGBIO Magnolia biondii HOM05D004324 ORTHO05D004840 1.6e-77 293.9 195 74.4
AL6G42680 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 2.0e-77 293.5 192 74.0
SGA_v2.0_scaffold11G05569 Striga asiatica HOM05D004324 ORTHO05D004840 1.8e-73 280.4 239 61.1
Medtr0088s0100 Medicago truncatula HOM05D004324 ORTHO05D004840 1.1e-70 271.2 317 48.6
Gohir.A05G252532 Gossypium hirsutum HOM05D004324 ORTHO05D004840 3.9e-68 262.7 177 72.9
Psat6g218080 Pisum sativum HOM05D004324 ORTHO05D004840 1.5e-67 260.8 193 64.2
Sc26g0001270 Simmondsia chinensis HOM05D004324 ORTHO05D004840 1.4e-62 244.2 158 76.6
Gohir.A05G252466 Gossypium hirsutum HOM05D004324 ORTHO05D004840 3.2e-46 189.9 133 69.9
Psat6g217960 Pisum sativum HOM05D004324 ORTHO05D004840 2.7e-45 186.8 153 60.1
RcHm_v2.0_Chr1g0349761 Rosa chinensis HOM05D004324 ORTHO05D004840 9.6e-43 178.3 118 72.9
AL6G42730 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 4.8e-42 176.0 120 69.2
CDE02G4314 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 3.7e-34 149.8 146 55.5
arahy.Tifrunner.gnm1.ann1.V33WN8 Arachis hypogaea HOM05D004324 ORTHO05D004840 3.4e-32 143.3 85 78.8
Duzib177G0443 Durio zibethinus HOM05D004324 ORTHO05D004840 2.7e-29 133.7 85 74.1
MD02G1206600 Malus domestica HOM05D004324 ORTHO05D004840 3.3e-27 126.7 96 67.7
SEGI_10460 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 5.7e-27 125.9 77 79.2
MD02G1206500 Malus domestica HOM05D004324 ORTHO05D004840 4.8e-26 122.9 73 79.5
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 6.9e-25 119.0 79 65.8
Actinidia02863 Actinidia chinensis HOM05D004324 ORTHO05D004840 2.6e-24 117.1 76 73.7
CAN.G23.23 Capsicum annuum HOM05D004324 ORTHO05D004840 7.6e-24 115.5 78 65.4
MCO07G634 Micromonas commoda HOM05D004324 ORTHO05D004840 4.3e-19 99.8 302 28.8
Pp3s30_709 Physcomitrium patens HOM05D004324 ORTHO05D004840 4.8e-18 96.3 234 29.5
Cfa023222 Carpinus fangiana HOM05D004324 ORTHO05D004840 8.2e-18 95.5 267 29.6
Prupe.7G087800 Prunus persica HOM05D004324 ORTHO05D004840 2.0e-16 90.9 122 48.4
Sc26g0001260 Simmondsia chinensis HOM05D004324 ORTHO05D004840 2.0e-16 90.9 125 45.6
Cfa025533 Carpinus fangiana HOM05D000146 ORTHO05D004840 4.5e-16 89.7 318 23.6
Duzib106G1980 Durio zibethinus HOM05D004324 ORTHO05D004840 1.2e-13 81.6 66 60.6
Ca_28979_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 4.7e-13 79.7 278 28.1
Psat0s13993g0040 Pisum sativum HOM05D004324 ORTHO05D004840 6.1e-13 79.3 73 58.9
Actinidia02867 Actinidia chinensis HOM05D004324 ORTHO05D004840 7.4e-11 72.4 83 49.4
Cfa024978 Carpinus fangiana HOM05D004324 ORTHO05D034102 1.1e-09 68.6 234 26.5
Actinidia31395 Actinidia chinensis HOM05D004324 ORTHO05D004840 4.5e-08 63.2 52 59.6
Prupe.2G076400 Prunus persica HOM05D004324 ORTHO05D004840 4.5e-08 63.2 52 63.5


User provided reference genes

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