Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g50761 Chara braunii HOM05D005083 ORTHO05D006310 3.0e-224 781.6 404 100.0
SMO361G0655 Selaginella moellendorffii HOM05D005083 ORTHO05D006310 4.2e-93 345.9 366 52.7
Mapoly0036s0123 Marchantia polymorpha HOM05D005083 ORTHO05D006310 3.0e-91 339.7 341 54.0
SEGI_29727 Sequoiadendron giganteum HOM05D005083 ORTHO05D006310 3.0e-91 339.7 330 55.2
AagrBONN_evm.TU.Sc2ySwM_228.1094 Anthoceros agrestis HOM05D005083 ORTHO05D006310 1.1e-90 337.8 380 50.3
Pp3c23_1190 Physcomitrium patens HOM05D005083 ORTHO05D006310 7.4e-90 335.1 347 50.7
Pp3c8_20000 Physcomitrium patens HOM05D005083 ORTHO05D006310 2.8e-89 333.2 343 51.3
Potri.010G180700 Populus trichocarpa HOM05D005083 ORTHO05D006310 2.5e-85 320.1 330 52.7
Prupe.7G036600 Prunus persica HOM05D005083 ORTHO05D006310 9.4e-85 318.2 330 52.7
ATR1096G007 Amborella trichopoda HOM05D005083 ORTHO05D006310 1.6e-84 317.4 371 46.9
CANSAT54G2676 Cannabis sativa HOM05D005083 ORTHO05D006310 4.7e-84 315.8 330 52.1
PGR119G1162 Punica granatum HOM05D005083 ORTHO05D006310 6.1e-84 315.5 334 50.3
TWI36G0321 Tripterygium wilfordii HOM05D005083 ORTHO05D006310 1.0e-83 314.7 284 56.0
Nn1g09878 Nelumbo nucifera HOM05D005083 ORTHO05D006310 1.4e-83 314.3 330 51.5
CSS0010526 Camellia sinensis var. sinensis HOM05D005083 ORTHO05D006310 1.8e-83 313.9 330 52.7
Peaxi162Scf00253g00621 Petunia axillaris HOM05D005083 ORTHO05D006310 1.8e-83 313.9 351 50.4
RcHm_v2.0_Chr3g0447481 Rosa chinensis HOM05D005083 ORTHO05D006310 1.8e-83 313.9 330 51.5
GSVIVG01032444001 Vitis vinifera HOM05D005083 ORTHO05D006310 1.8e-83 313.9 330 51.5
CiPaw.07G085600 Carya illinoinensis HOM05D005083 ORTHO05D006310 3.0e-83 313.2 329 52.0
Cfa006235 Carpinus fangiana HOM05D005083 ORTHO05D006310 6.7e-83 312.0 330 51.5
PSO210G3440 Papaver somniferum HOM05D005083 ORTHO05D006310 6.7e-83 312.0 330 51.5
MD14G1089300 Malus domestica HOM05D005083 ORTHO05D006310 8.8e-83 311.6 330 51.8
A03p08290 Brassica napus HOM05D001138 ORTHO05D006310 2.0e-82 310.5 336 50.0
Sed0024795 Sechium edule HOM05D005083 ORTHO05D006310 2.0e-82 310.5 320 51.9
CSS0033222 Camellia sinensis var. sinensis HOM05D005083 ORTHO05D006310 3.3e-82 309.7 366 47.8
Duzib128G0478 Durio zibethinus HOM05D005083 ORTHO05D006310 3.3e-82 309.7 329 51.1
QL08p044788 Quercus lobata HOM05D005083 ORTHO05D006310 3.3e-82 309.7 330 51.2
Ciclev10004486m.g Citrus clementina HOM05D005083 ORTHO05D006310 4.4e-82 309.3 343 48.7
BraA03t10156Z Brassica rapa HOM05D005083 ORTHO05D006310 5.7e-82 308.9 328 50.0
CSS0048819 Camellia sinensis var. sinensis HOM05D005083 ORTHO05D006310 5.7e-82 308.9 366 47.3
FvH4_6g00120 Fragaria vesca HOM05D005083 ORTHO05D006310 5.7e-82 308.9 330 50.9
Nitab4.5_0001308g0170 Nicotiana tabacum HOM05D005083 ORTHO05D006310 5.7e-82 308.9 330 50.9
Thecc.05G188600 Theobroma cacao HOM05D005083 ORTHO05D006310 5.7e-82 308.9 329 51.4
BcaB01g05202 Brassica carinata HOM05D005083 ORTHO05D006310 7.4e-82 308.5 328 50.0
C03p09650 Brassica napus HOM05D001138 ORTHO05D006310 7.4e-82 308.5 328 50.0
Solyc02g081460.4 Solanum lycopersicum HOM05D005083 ORTHO05D006310 7.4e-82 308.5 330 50.9
Sopen02g026100 Solanum pennellii HOM05D005083 ORTHO05D006310 7.4e-82 308.5 330 50.9
Ca_30805_v3 Cicer arietinum L. HOM05D005083 ORTHO05D006310 9.7e-82 308.1 330 49.4
THA.LOC104820850 Tarenaya hassleriana HOM05D005083 ORTHO05D006310 9.7e-82 308.1 329 50.8
Actinidia06798 Actinidia chinensis HOM05D005083 ORTHO05D006310 1.3e-81 307.8 330 51.2
CsaV3_3G003930 Cucumis sativus L. HOM05D005083 ORTHO05D006310 1.3e-81 307.8 320 51.9
Gorai.002G119900 Gossypium raimondii HOM05D005083 ORTHO05D006310 1.3e-81 307.8 329 51.1
PGSC0003DMG400019714 Solanum tuberosum HOM05D005083 ORTHO05D006310 1.3e-81 307.8 330 50.9
FAN09G1831 Fragaria x ananassa HOM05D005083 ORTHO05D006310 1.7e-81 307.4 330 50.6
Glyma.03G090100 Glycine max HOM05D005083 ORTHO05D006310 1.7e-81 307.4 343 48.7
VMungo0331G1409 Vigna mungo HOM05D005083 ORTHO05D006310 2.2e-81 307.0 345 47.8
Medtr8g011450 Medicago truncatula HOM05D005083 ORTHO05D006310 3.7e-81 306.2 330 49.1
Phvul.010G031700 Phaseolus vulgaris HOM05D005083 ORTHO05D006310 3.7e-81 306.2 330 49.4
CAN.G809.91 Capsicum annuum HOM05D005083 ORTHO05D006310 4.8e-81 305.8 330 50.6
FAN02G1711 Fragaria x ananassa HOM05D005083 ORTHO05D006310 4.8e-81 305.8 330 50.6
Glyma.16G082900 Glycine max HOM05D005083 ORTHO05D006310 4.8e-81 305.8 343 48.1
Ca_23185_v3 Cicer arietinum L. HOM05D005083 ORTHO05D006310 8.2e-81 305.1 320 50.0
Lj1g0009175 Lotus japonicus HOM05D005083 ORTHO05D006310 8.2e-81 305.1 330 50.0
Pp3c13_20560 Physcomitrium patens HOM05D005083 ORTHO05D006310 8.2e-81 305.1 348 48.6
Pp3c13_20568 Physcomitrium patens HOM05D005083 ORTHO05D006310 8.2e-81 305.1 348 48.6
Sc16g0010610 Simmondsia chinensis HOM05D005083 ORTHO05D006310 1.1e-80 304.7 343 49.3
EL10Ac4g10018 Beta vulgaris HOM05D005083 ORTHO05D006310 1.4e-80 304.3 330 49.7
AUR62000278 Chenopodium quinoa HOM05D005083 ORTHO05D006310 3.1e-80 303.1 330 49.4
Cc09_g04250 Coffea canephora HOM05D005083 ORTHO05D006310 3.1e-80 303.1 340 48.8
Gohir.D01G094500 Gossypium hirsutum HOM05D005083 ORTHO05D006310 3.1e-80 303.1 329 50.5
Psat4g206560 Pisum sativum HOM05D005083 ORTHO05D006310 4.1e-80 302.8 330 49.1
Aa31LG11G12310 Aethionema arabicum HOM05D005083 ORTHO05D006310 5.3e-80 302.4 328 50.3
TPR.G28978 Trifolium pratense HOM05D005083 ORTHO05D006310 6.9e-80 302.0 330 48.5
AT5G17410 Arabidopsis thaliana HOM05D005083 ORTHO05D006310 9.1e-80 301.6 328 49.4
Carub.0006s1563 Capsella rubella HOM05D005083 ORTHO05D006310 9.1e-80 301.6 328 49.7
TAR375G0465 Trochodendron aralioides HOM05D005083 ORTHO05D006310 9.1e-80 301.6 330 49.4
AL6G28480 Arabidopsis lyrata HOM05D005083 ORTHO05D006310 1.2e-79 301.2 328 49.7
Thhalv10012868m.g Eutrema salsugineum HOM05D005083 ORTHO05D006310 2.0e-79 300.4 328 49.1
Atru.chr12.1671 Acer truncatum HOM05D005083 ORTHO05D006310 2.6e-79 300.1 330 49.7
HPP92_018347 Vanilla planifolia HOM05D005083 ORTHO05D006310 2.6e-79 300.1 330 49.7
CARHR195800 Cardamine hirsuta HOM05D005083 ORTHO05D006310 3.4e-79 299.7 328 49.4
Dinv15379 Davidia involucrata HOM05D005083 ORTHO05D006310 3.4e-79 299.7 329 50.5
Lsat_1_v5_gn_2_27601 Lactuca sativa HOM05D005083 ORTHO05D006310 5.9e-79 298.9 342 48.2
Lj4A702T41 Lonicera japonica HOM05D005083 ORTHO05D006310 7.7e-79 298.5 328 51.2
Aqoxy3G04197 Aquilegia oxysepala HOM05D005083 ORTHO05D006310 1.0e-78 298.1 330 50.0
BcaB01g04935 Brassica carinata HOM05D005083 ORTHO05D006310 1.0e-78 298.1 328 49.1
Eucgr.B01438 Eucalyptus grandis HOM05D005083 ORTHO05D006310 1.0e-78 298.1 364 46.7
arahy.Tifrunner.gnm1.ann1.PCAY5Y Arachis hypogaea HOM05D005083 ORTHO05D006310 1.3e-78 297.7 316 50.6
MSTRG.8186 Avicennia marina HOM05D005083 ORTHO05D006310 1.3e-78 297.7 366 46.7
BolC3t13463H Brassica oleracea HOM05D005083 ORTHO05D006310 1.3e-78 297.7 333 48.6
Haze_04595 Corylus avellana HOM05D005083 ORTHO05D006310 2.2e-78 297.0 360 46.9
Rhsim05G0167600 Rhododendron simsii HOM05D005083 ORTHO05D006310 2.2e-78 297.0 359 46.8
arahy.Tifrunner.gnm1.ann1.1T2QZ7 Arachis hypogaea HOM05D005083 ORTHO05D006310 2.9e-78 296.6 316 50.6
Lalb_Chr03g0041081 Lupinus albus HOM05D005083 ORTHO05D006310 2.9e-78 296.6 329 48.0
Os04g0501700 Oryza sativa ssp. japonica HOM05D005083 ORTHO05D006310 2.9e-78 296.6 343 47.8
Hund07372 Selenicereus undatus HOM05D005083 ORTHO05D006310 3.8e-78 296.2 331 48.9
HanXRQChr14g0433021 Helianthus annuus HOM05D005083 ORTHO05D006310 5.0e-78 295.8 352 47.4
PSO832G1645 Papaver somniferum HOM05D005083 ORTHO05D006310 5.0e-78 295.8 333 49.2
Zm00001eb425980 Zea mays HOM05D005083 ORTHO05D006310 6.5e-78 295.4 330 50.0
BolC9t58815H Brassica oleracea HOM05D005083 ORTHO05D006310 1.4e-77 294.3 328 48.5
Atru.chr4.1877 Acer truncatum HOM05D005083 ORTHO05D006310 9.4e-77 291.6 330 48.2
Migut.F01835 Erythranthe guttata HOM05D005083 ORTHO05D006310 1.6e-76 290.8 322 49.4
Nitab4.5_0000842g0030 Nicotiana tabacum HOM05D005083 ORTHO05D006310 1.6e-76 290.8 359 46.8
ClCG10G004080 Citrullus lanatus HOM05D005083 ORTHO05D006310 2.1e-76 290.4 361 46.0
Nitab4.5_0002233g0090 Nicotiana tabacum HOM05D005083 ORTHO05D006310 2.1e-76 290.4 359 46.8
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 8.0e-76 288.5 342 46.8
C09p59750 Brassica napus HOM05D005083 ORTHO05D006310 1.7e-73 280.8 335 46.0
Oeu062030.2 Olea europaea HOM05D005083 ORTHO05D006310 2.4e-72 276.9 364 44.8
SGA_v2.0_scaffold122G33218 Striga asiatica HOM05D005083 ORTHO05D006310 1.6e-71 274.2 398 43.2
MELO3C014078.2 Cucumis melo HOM05D005083 ORTHO05D006310 7.7e-71 271.9 321 48.6
AUR62006625 Chenopodium quinoa HOM05D005083 ORTHO05D006310 5.0e-70 269.2 347 46.7
Manes.13G001400 Manihot esculenta HOM05D005083 ORTHO05D006310 8.5e-70 268.5 313 48.9
Ah.06g195270 Amaranthus hybridus HOM05D005083 ORTHO05D006310 2.1e-68 263.8 293 50.9
COL.COLO4_36604 Corchorus olitorius HOM05D005083 ORTHO05D006310 8.0e-68 261.9 368 43.2
HanXRQChr03g0062031 Helianthus annuus HOM05D005083 ORTHO05D006310 1.8e-67 260.8 327 46.5
CDE08G0008 Ceratophyllum demersum HOM05D005083 ORTHO05D006310 3.7e-65 253.1 290 47.6
Sp6g26810 Schrenkiella parvula HOM05D005083 ORTHO05D006310 3.1e-64 250.0 326 43.3
Gohir.A01G108100 Gossypium hirsutum HOM05D005083 ORTHO05D006310 5.5e-61 239.2 285 48.1
MBI18_g24480_MAGBIO Magnolia biondii HOM05D005083 ORTHO05D006310 7.5e-58 228.8 354 41.2
MCO10G199 Micromonas commoda HOM05D005083 ORTHO05D006310 1.1e-53 214.9 387 37.0
SalBow6G5693 Salvia bowleyana HOM05D005083 ORTHO05D006310 5.5e-53 212.6 333 42.0
MBI18_g11247_MAGBIO Magnolia biondii HOM05D005083 ORTHO05D006310 6.8e-51 205.7 160 60.6
unitig_22.g6621 Utricularia gibba HOM05D005083 ORTHO05D006310 6.3e-49 199.1 407 35.9
vmacro11193 Vaccinium macrocarpon HOM05D005083 ORTHO05D006310 8.6e-46 188.7 291 40.5
BcaB08g36773 Brassica carinata HOM05D005083 ORTHO05D006310 5.6e-45 186.0 301 40.2
Glyma.20G051200 Glycine max HOM05D005083 ORTHO05D006310 1.1e-40 171.8 222 42.8
SHI07636 Sapria himalayana HOM05D005083 ORTHO05D006310 7.3e-37 159.1 136 58.1
CDE02G0214 Ceratophyllum demersum HOM05D005083 ORTHO05D006310 4.7e-36 156.4 337 33.8
A10p22000 Brassica napus HOM05D005083 ORTHO05D006310 8.0e-36 155.6 264 37.9
PRCOL_00000469 Prasinoderma coloniale HOM05D005083 ORTHO05D006310 9.8e-34 148.7 325 34.2
Lsat_1_v5_gn_1_124700 Lactuca sativa HOM05D005083 ORTHO05D006310 2.3e-30 137.5 149 48.3
Cre12.g525500 Chlamydomonas reinhardtii HOM05D005083 ORTHO05D006310 6.6e-30 136.0 384 28.9
BraA03t14759Z Brassica rapa HOM05D005083 ORTHO05D006310 2.9e-25 120.6 122 49.2
Cfa026615 Carpinus fangiana HOM05D005083 ORTHO05D006310 3.2e-24 117.1 225 32.9
Psat1g109200 Pisum sativum HOM05D003361 ORTHO05D003760 1.3e-22 111.7 91 59.3
Lsat_1_v5_gn_0_22860 Lactuca sativa HOM05D005083 ORTHO05D006310 2.4e-19 100.9 117 47.0
BraA10t44257Z Brassica rapa HOM05D005083 ORTHO05D006310 9.9e-18 95.5 260 29.6
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 1.2e-15 88.6 95 49.5
TAR362G0022 Trochodendron aralioides HOM05D005083 ORTHO05D006310 4.6e-15 86.7 110 45.5
C02p31010 Brassica napus HOM05D005083 ORTHO05D012147 2.5e-13 80.9 88 50.0
HPP92_018381 Vanilla planifolia HOM05D005083 ORTHO05D006310 7.3e-13 79.3 296 27.0
Cpa.g.sc2180.1 Carica papaya HOM05D005083 ORTHO05D006310 2.9e-09 67.4 134 32.8
RcHm_v2.0_Chr4g0425031 Rosa chinensis HOM05D005083 ORTHO05D006310 3.8e-09 67.0 71 45.1
SEGI_28464 Sequoiadendron giganteum HOM05D005083 ORTHO05D006310 1.9e-08 64.7 56 50.0
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 3.2e-08 63.9 57 50.9
THA.LOC104809935 Tarenaya hassleriana HOM05D004581 ORTHO05D006211 1.3e-06 58.5 307 24.1
ECA247G1565 Erigeron canadensis HOM05D004581 ORTHO05D006211 1.7e-06 58.2 289 25.6
SMO356G0383 Selaginella moellendorffii HOM05D004581 ORTHO05D006211 5.1e-06 56.6 298 22.8
Hund03857 Selenicereus undatus HOM05D005083 ORTHO05D006310 6.6e-06 56.2 120 30.8


User provided reference genes

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