Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 0.0e+00 1554.3 842 100.0
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 3.7e-144 516.5 826 41.4
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 6.6e-141 505.8 832 41.5
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 4.9e-136 489.6 830 41.0
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.9e-135 487.6 854 39.1
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 1.9e-132 477.6 834 40.9
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 3.8e-128 463.4 829 38.2
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 9.3e-111 405.6 813 35.2
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 1.9e-108 397.9 822 33.6
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 9.6e-108 395.6 825 34.1
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 4.0e-106 390.2 821 33.6
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 1.5e-105 388.3 821 34.6
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 3.4e-105 387.1 825 33.3
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 1.0e-104 385.6 826 33.1
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 3.8e-104 383.6 825 33.8
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 8.4e-104 382.5 830 33.3
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 3.2e-103 380.6 832 33.1
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 4.2e-103 380.2 837 34.1
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 1.2e-102 378.6 818 32.6
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 3.5e-102 377.1 837 33.7
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 3.5e-102 377.1 823 33.4
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 6.0e-102 376.3 819 33.3
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 6.0e-102 376.3 838 33.3
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 7.9e-102 375.9 844 32.7
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 6.7e-101 372.9 824 33.1
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 8.7e-101 372.5 819 33.3
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 1.9e-100 371.3 823 32.8
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 4.3e-100 370.2 831 32.5
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 4.3e-100 370.2 815 33.1
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 7.4e-100 369.4 836 32.2
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 7.4e-100 369.4 820 33.4
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 1.3e-99 368.6 821 33.9
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 1.6e-99 368.2 820 31.8
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 2.1e-99 367.9 815 32.9
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 4.8e-99 366.7 828 32.7
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 8.2e-99 365.9 818 33.6
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 8.2e-99 365.9 838 31.7
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 8.2e-99 365.9 817 32.8
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.4e-98 365.2 821 33.3
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 1.4e-98 365.2 830 32.7
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 1.4e-98 365.2 824 33.6
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 3.1e-98 364.0 825 32.2
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 4.1e-98 363.6 816 32.7
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 6.9e-98 362.8 825 32.6
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 6.9e-98 362.8 824 33.0
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 1.2e-97 362.1 826 32.4
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 1.2e-97 362.1 827 33.0
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.2e-97 362.1 825 32.7
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.6e-97 360.9 829 32.3
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 1.0e-96 359.0 815 32.8
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 1.3e-96 358.6 826 32.7
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 3.8e-96 357.1 821 32.5
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 3.8e-96 357.1 820 32.3
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 3.8e-96 357.1 817 32.6
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 6.5e-96 356.3 847 31.9
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 8.5e-96 355.9 818 34.2
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 8.5e-96 355.9 814 32.8
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 1.1e-95 355.5 826 32.1
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.1e-95 355.5 835 32.5
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 1.4e-95 355.1 825 31.4
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 2.5e-95 354.4 842 32.7
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 3.2e-95 354.0 826 32.4
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 5.5e-95 353.2 818 33.6
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 5.5e-95 353.2 841 32.3
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 7.2e-95 352.8 827 32.2
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 1.6e-94 351.7 813 32.2
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 7.9e-94 349.4 821 31.7
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 1.0e-93 349.0 819 33.8
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 1.0e-93 349.0 833 31.3
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 1.3e-93 348.6 819 33.6
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 1.8e-93 348.2 824 31.8
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 3.0e-93 347.4 819 33.7
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 3.0e-93 347.4 833 31.9
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 3.0e-93 347.4 825 32.2
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 6.7e-93 346.3 844 31.9
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 6.7e-93 346.3 821 32.5
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 6.7e-93 346.3 815 31.2
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 6.7e-93 346.3 830 31.4
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 1.1e-92 345.5 821 32.3
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 1.9e-92 344.7 817 31.7
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 5.7e-92 343.2 824 33.6
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 9.7e-92 342.4 836 32.9
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 9.7e-92 342.4 817 32.2
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 1.3e-91 342.0 827 31.2
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 1.6e-91 341.7 776 33.9
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 2.2e-91 341.3 846 31.7
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 2.2e-91 341.3 816 32.5
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 2.8e-91 340.9 820 31.7
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 2.8e-91 340.9 819 32.7
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 4.8e-91 340.1 821 31.2
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 1.1e-90 339.0 822 32.6
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 3.1e-90 337.4 777 34.2
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 6.9e-90 336.3 827 32.2
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 1.5e-89 335.1 824 33.3
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 2.2e-88 331.3 823 32.4
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 3.8e-88 330.5 823 32.3
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 8.5e-88 329.3 835 31.0
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 1.1e-87 328.9 782 30.6
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 1.9e-87 328.2 823 32.3
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 5.5e-87 326.6 816 31.6
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 1.3e-83 315.5 752 32.4
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 2.8e-83 314.3 760 31.7
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.3e-80 305.4 807 30.9
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 3.2e-79 300.8 820 30.0
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 1.3e-75 288.9 867 29.5
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 3.1e-74 284.3 879 31.1
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 9.1e-74 282.7 760 31.4
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 1.0e-72 279.3 934 27.7
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 2.5e-71 274.6 307 45.3
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 9.4e-71 272.7 299 45.8
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 7.0e-66 256.5 790 29.6
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 1.6e-65 255.4 850 25.6
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 3.5e-65 254.2 786 28.8
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.1e-63 249.2 631 33.3
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 1.9e-63 248.4 668 31.9
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 1.4e-61 242.3 779 29.3
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 4.8e-59 233.8 317 41.0
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 1.6e-54 218.8 330 36.7
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 3.0e-53 214.5 239 42.7
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 9.2e-50 203.0 847 26.8
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 7.0e-42 176.8 232 41.4
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 1.1e-39 169.5 235 37.9
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 1.7e-35 155.6 620 27.4
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 2.0e-33 148.7 881 22.9
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 3.0e-32 144.8 303 29.0
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 1.9e-31 142.1 188 38.3
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 4.4e-28 131.0 369 30.6
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 1.7e-27 129.0 669 22.0
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 4.1e-26 124.4 407 30.5
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 4.3e-23 114.4 306 31.4
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 1.2e-12 79.7 92 42.4
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 4.4e-12 77.8 95 44.2
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 1.4e-10 72.8 131 35.1
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 3.2e-10 71.6 118 39.0
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 1.0e-08 66.6 76 39.5
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 1.9e-07 62.4 66 42.4
AagrBONN_evm.TU.Sc2ySwM_340.1683 Anthoceros agrestis HOM05D004020 ORTHO05D071844 1.6e-06 59.3 61 42.6


User provided reference genes

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