Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 1.9e-124 449.1 220 100.0
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 3.9e-69 265.4 177 69.5
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 9.7e-68 260.8 172 70.3
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 2.2e-67 259.6 170 68.8
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 2.8e-67 259.2 172 69.8
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 3.7e-67 258.8 172 69.8
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 4.8e-67 258.5 177 67.8
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 4.8e-67 258.5 172 69.8
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 4.8e-67 258.5 171 70.2
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 8.2e-67 257.7 169 68.0
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 1.1e-66 257.3 173 68.2
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 1.1e-66 257.3 171 69.0
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 1.4e-66 256.9 170 71.2
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 1.8e-66 256.5 172 69.2
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 4.1e-66 255.4 171 68.4
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 6.9e-66 254.6 172 70.3
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 9.0e-66 254.2 173 68.8
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 9.0e-66 254.2 174 69.0
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 9.0e-66 254.2 172 68.6
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 2.0e-65 253.1 171 69.0
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 2.6e-65 252.7 171 67.8
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 3.4e-65 252.3 172 67.4
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 4.5e-65 251.9 171 67.8
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 5.9e-65 251.5 171 67.3
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 7.7e-65 251.1 175 68.0
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 1.0e-64 250.8 176 64.8
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 1.3e-64 250.4 175 66.9
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 1.3e-64 250.4 173 67.1
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 1.7e-64 250.0 172 66.9
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 1.7e-64 250.0 172 66.9
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 2.2e-64 249.6 171 70.2
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 3.8e-64 248.8 172 68.0
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 3.8e-64 248.8 172 66.3
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 3.8e-64 248.8 167 67.7
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 6.5e-64 248.1 167 68.3
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 1.1e-63 247.3 169 66.9
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 2.5e-63 246.1 173 68.2
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 2.5e-63 246.1 172 68.6
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 3.2e-63 245.7 171 67.3
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 3.2e-63 245.7 176 65.9
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 3.2e-63 245.7 171 67.3
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 3.2e-63 245.7 171 67.3
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 3.2e-63 245.7 174 64.9
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 3.2e-63 245.7 167 65.9
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 3.2e-63 245.7 175 65.7
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 4.2e-63 245.4 174 66.1
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 4.2e-63 245.4 193 60.6
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 5.5e-63 245.0 170 67.1
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 7.2e-63 244.6 172 66.9
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.6e-62 243.4 174 67.2
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 2.1e-62 243.0 174 66.1
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 2.7e-62 242.7 174 64.4
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 2.7e-62 242.7 176 64.2
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 2.7e-62 242.7 171 66.7
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 2.7e-62 242.7 169 67.5
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 3.6e-62 242.3 173 64.7
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 4.6e-62 241.9 174 66.7
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 4.6e-62 241.9 171 67.8
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 4.6e-62 241.9 170 66.5
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 4.6e-62 241.9 173 67.1
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 6.1e-62 241.5 175 66.3
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 6.1e-62 241.5 200 59.5
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 6.1e-62 241.5 170 65.9
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 6.1e-62 241.5 158 69.0
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 1.0e-61 240.7 175 66.3
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 1.4e-61 240.4 174 63.8
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.4e-61 240.4 174 63.8
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 1.4e-61 240.4 176 63.6
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 1.4e-61 240.4 169 65.1
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.4e-61 240.4 172 66.3
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.4e-61 240.4 172 66.3
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.8e-61 240.0 174 63.8
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 1.8e-61 240.0 176 63.6
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 1.8e-61 240.0 171 65.5
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 2.3e-61 239.6 175 64.0
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 2.3e-61 239.6 172 66.3
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 3.0e-61 239.2 169 66.3
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 3.9e-61 238.8 172 66.3
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 3.9e-61 238.8 176 64.8
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 5.1e-61 238.4 174 63.8
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 5.1e-61 238.4 176 63.1
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 6.7e-61 238.0 174 65.5
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 6.7e-61 238.0 171 65.5
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 6.7e-61 238.0 173 66.5
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 6.7e-61 238.0 173 66.5
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 8.8e-61 237.7 172 65.1
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 1.1e-60 237.3 176 63.1
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 1.1e-60 237.3 176 63.1
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 1.1e-60 237.3 176 63.1
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 1.5e-60 236.9 177 63.3
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 1.5e-60 236.9 177 63.3
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 3.3e-60 235.7 173 64.2
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 4.4e-60 235.3 170 65.3
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 4.4e-60 235.3 173 64.7
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 5.7e-60 235.0 172 65.7
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 1.3e-59 233.8 197 57.9
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 2.2e-59 233.0 172 63.4
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 8.2e-59 231.1 168 63.1
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 1.8e-58 229.9 184 62.0
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 1.8e-58 229.9 176 62.5
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 2.4e-58 229.6 173 62.4
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 4.1e-58 228.8 173 61.8
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 1.2e-57 227.3 178 62.9
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 1.2e-57 227.3 167 62.9
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 1.2e-57 227.3 169 63.9
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 4.5e-57 225.3 171 62.0
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.7e-56 223.4 138 73.9
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 2.2e-56 223.0 137 75.2
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 8.5e-56 221.1 139 74.8
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 1.4e-55 220.3 156 67.3
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 2.5e-55 219.5 173 61.3
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 4.2e-55 218.8 146 70.5
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 7.2e-55 218.0 173 57.8
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 7.2e-55 218.0 168 61.9
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 7.2e-55 218.0 139 71.9
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.0e-53 214.2 158 65.8
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 8.8e-53 211.1 142 71.8
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 1.3e-51 207.2 135 76.3
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 2.2e-51 206.5 168 57.7
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 1.1e-50 204.1 144 67.4
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 3.8e-48 195.7 175 52.6
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 8.5e-48 194.5 139 66.9
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.9e-47 193.4 139 66.2
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 1.2e-46 190.7 155 60.6
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 2.7e-46 189.5 151 62.9
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 8.8e-45 184.5 123 72.4
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 1.5e-44 183.7 130 68.5
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 3.5e-41 172.6 151 57.6
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 4.5e-41 172.2 188 49.5
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 1.5e-39 167.2 151 53.0
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 3.7e-35 152.5 91 73.6
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 6.3e-35 151.8 177 44.1
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 2.4e-34 149.8 81 79.0
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 1.1e-31 141.0 146 55.5
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 1.5e-31 140.6 114 61.4
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 2.8e-30 136.3 84 71.4
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 1.4e-29 134.0 87 70.1
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 4.0e-29 132.5 77 71.4
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 4.0e-29 132.5 77 71.4
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 5.2e-29 132.1 157 46.5
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 1.2e-28 131.0 83 68.7
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 2.0e-28 130.2 115 54.8
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 2.6e-28 129.8 81 69.1
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 5.7e-28 128.6 139 51.1
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 5.7e-28 128.6 76 71.1
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 4.9e-27 125.6 151 45.7
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 1.1e-26 124.4 141 47.5
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 1.8e-26 123.6 71 71.8
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 1.8e-26 123.6 71 71.8
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 1.2e-25 120.9 67 74.6
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 1.2e-25 120.9 62 82.3
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 1.4e-21 107.5 51 86.3
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 7.5e-20 101.7 109 49.5
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 7.5e-20 101.7 81 61.7
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 1.4e-18 97.4 83 61.4
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 3.2e-18 96.3 71 57.7
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 4.1e-18 95.9 75 56.0
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 5.4e-18 95.5 99 49.5
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 2.3e-16 90.1 47 83.0
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 3.0e-16 89.7 76 52.6
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 3.0e-16 89.7 76 52.6
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 5.0e-16 89.0 103 44.7
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 5.0e-16 89.0 67 56.7
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.9e-15 87.0 97 47.4
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 3.3e-15 86.3 47 80.9
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 1.6e-14 84.0 81 48.1
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 1.6e-14 84.0 81 48.1
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 1.4e-13 80.9 70 51.4
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 1.4e-13 80.9 70 51.4
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 5.2e-13 79.0 104 41.3
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 8.3e-11 71.6 116 37.1
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 1.9e-10 70.5 40 75.0
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 1.2e-09 67.8 107 34.6
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 4.6e-09 65.9 78 48.7
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 7.3e-07 58.5 30 80.0


User provided reference genes

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