Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 3.9e-301 1037.3 516 100.0
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 9.2e-178 627.5 508 63.2
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.6e-177 626.7 506 63.6
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 4.6e-177 625.2 506 62.1
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 4.6e-177 625.2 506 62.8
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 6.0e-177 624.8 506 62.8
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 6.0e-177 624.8 506 63.0
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 7.8e-177 624.4 509 61.9
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 1.0e-176 624.0 506 62.8
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 1.3e-176 623.6 506 62.8
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 2.3e-176 622.9 506 62.6
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 3.0e-176 622.5 508 62.4
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 5.1e-176 621.7 508 62.6
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 5.1e-176 621.7 507 62.3
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 1.1e-175 620.5 505 61.8
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 1.1e-175 620.5 507 62.5
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 1.1e-175 620.5 508 62.6
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 1.5e-175 620.2 507 63.3
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 1.9e-175 619.8 506 62.1
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 2.5e-175 619.4 507 61.7
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 2.5e-175 619.4 506 62.3
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 4.3e-175 618.6 514 62.3
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 4.3e-175 618.6 509 61.3
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 4.3e-175 618.6 507 62.3
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 5.6e-175 618.2 506 62.8
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 5.6e-175 618.2 507 62.9
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 9.5e-175 617.5 508 62.2
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 9.5e-175 617.5 512 62.1
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 9.5e-175 617.5 513 61.8
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 9.5e-175 617.5 506 61.5
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 9.5e-175 617.5 509 61.7
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 1.2e-174 617.1 514 62.1
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 1.2e-174 617.1 506 62.6
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 1.2e-174 617.1 507 62.1
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 1.6e-174 616.7 510 62.2
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 1.6e-174 616.7 510 63.1
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 1.6e-174 616.7 509 61.9
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 2.1e-174 616.3 506 62.6
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 2.1e-174 616.3 512 61.9
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 2.1e-174 616.3 517 61.7
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 2.8e-174 615.9 506 62.6
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.8e-174 615.9 506 62.1
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 2.8e-174 615.9 506 61.5
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 2.8e-174 615.9 509 62.5
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 3.6e-174 615.5 508 62.2
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 4.7e-174 615.1 512 61.5
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 4.7e-174 615.1 512 60.9
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 4.7e-174 615.1 506 61.9
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 6.2e-174 614.8 510 61.8
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 6.2e-174 614.8 507 61.5
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 6.2e-174 614.8 509 61.3
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 8.1e-174 614.4 516 60.9
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 8.1e-174 614.4 507 61.1
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 8.1e-174 614.4 506 62.5
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 8.1e-174 614.4 509 62.3
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 8.1e-174 614.4 514 61.3
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 1.1e-173 614.0 506 61.5
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 1.1e-173 614.0 508 62.0
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 1.4e-173 613.6 507 61.9
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.4e-173 613.6 506 61.7
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 1.8e-173 613.2 506 62.1
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 2.4e-173 612.8 512 61.5
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 2.4e-173 612.8 506 61.7
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 3.1e-173 612.5 506 61.7
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.1e-173 612.5 506 62.3
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 4.0e-173 612.1 507 61.5
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 8.9e-173 610.9 508 61.0
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 8.9e-173 610.9 506 62.6
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 8.9e-173 610.9 506 61.5
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.2e-172 610.5 506 61.5
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 1.2e-172 610.5 509 62.5
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 1.5e-172 610.1 520 61.2
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 2.0e-172 609.8 515 61.6
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 2.6e-172 609.4 513 61.0
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 2.6e-172 609.4 508 61.0
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 2.6e-172 609.4 512 61.3
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 3.4e-172 609.0 521 60.5
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 3.4e-172 609.0 535 60.4
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 4.4e-172 608.6 509 61.3
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 4.4e-172 608.6 507 61.7
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 5.8e-172 608.2 507 61.5
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 5.8e-172 608.2 507 60.7
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 7.6e-172 607.8 508 62.0
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 9.9e-172 607.4 506 60.9
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 9.9e-172 607.4 508 62.6
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 1.3e-171 607.1 508 60.8
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 1.3e-171 607.1 507 61.3
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.3e-171 607.1 506 61.9
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.3e-171 607.1 512 62.5
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.3e-171 607.1 546 59.0
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 2.2e-171 606.3 507 62.1
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 2.2e-171 606.3 507 61.1
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 2.9e-171 605.9 506 60.5
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 3.8e-171 605.5 509 61.5
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.1e-170 604.0 506 62.1
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 1.4e-170 603.6 506 61.5
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 3.2e-170 602.4 497 63.2
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 7.1e-170 601.3 511 60.1
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 7.1e-170 601.3 509 61.1
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 9.2e-170 600.9 507 60.9
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 1.2e-169 600.5 513 59.5
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 1.0e-168 597.4 510 61.6
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 1.3e-168 597.0 508 61.2
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 1.3e-168 597.0 506 61.9
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 3.9e-168 595.5 540 58.5
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 2.1e-166 589.7 507 61.3
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 3.6e-166 589.0 435 66.7
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 5.8e-164 581.6 507 59.8
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 3.8e-163 578.9 507 59.4
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 1.5e-156 557.0 467 61.5
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 1.7e-155 553.5 465 62.4
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 3.2e-154 549.3 463 60.3
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 3.9e-152 542.3 463 60.3
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 1.8e-149 533.5 393 67.9
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 2.0e-148 530.0 458 60.3
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 9.9e-148 527.7 535 52.3
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 1.7e-147 526.9 463 59.4
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.1e-137 493.4 513 55.0
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 2.5e-135 486.5 506 51.2
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 4.8e-134 482.3 497 55.3
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 1.4e-133 480.7 427 57.8
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 6.1e-121 438.7 400 57.2
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 2.3e-120 436.8 615 42.8
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 8.8e-120 434.9 392 58.7
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 2.4e-117 426.8 513 48.1
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.0e-115 421.4 405 56.0
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.5e-111 407.5 269 73.6
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.2e-108 397.9 490 48.4
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 2.5e-106 390.2 407 51.8
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 1.2e-103 381.3 365 56.7
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 1.2e-100 371.3 236 75.0
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 5.0e-99 365.9 237 74.7
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 5.2e-96 355.9 236 71.6
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 7.8e-84 315.5 452 42.9
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.5e-79 301.2 329 52.6
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 4.6e-76 289.7 303 53.8
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 1.1e-72 278.5 317 50.2
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.2e-71 275.0 236 61.4
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 2.1e-65 254.2 248 56.0
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 4.4e-63 246.5 279 49.8
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 5.2e-56 223.0 259 51.0
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 9.2e-53 212.2 323 41.8
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 3.3e-50 203.8 258 45.7
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 1.5e-39 168.3 95 81.1
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 2.0e-39 167.9 95 83.2
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 5.4e-37 159.8 259 39.0
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 2.1e-36 157.9 95 78.9
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 2.1e-33 147.9 168 47.6
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.7e-30 138.3 151 51.7
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 2.2e-30 137.9 295 33.2
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 5.5e-29 133.3 157 47.8
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 9.3e-29 132.5 152 43.4
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 1.9e-26 124.8 115 53.0
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 8.2e-25 119.4 75 70.7
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 1.1e-21 109.0 78 65.4
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 7.9e-20 102.8 85 57.6
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 3.0e-19 100.9 128 40.6
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 3.1e-16 90.9 169 39.1
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 5.9e-15 86.7 93 49.5
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 2.2e-09 68.2 36 80.6
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 2.4e-08 64.7 51 62.7
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 1.0e-06 59.3 30 83.3


User provided reference genes

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