Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 0.0e+00 5078.8 2598 100.0
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 5.6e-231 806.6 2663 27.8
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 2.7e-225 787.7 2203 30.1
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 6.6e-216 756.5 2519 27.0
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 1.3e-214 752.3 2631 26.2
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 1.3e-211 742.3 2578 26.0
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 2.2e-211 741.5 2587 25.9
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 8.4e-211 739.6 2612 26.0
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 1.1e-210 739.2 2414 26.4
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 1.9e-210 738.4 2628 26.2
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 2.1e-209 734.9 2684 25.9
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 3.0e-208 731.1 2646 25.7
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 6.6e-208 729.9 2639 26.0
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 3.3e-207 727.6 2318 26.9
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 5.6e-207 726.9 2583 26.4
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 4.8e-206 723.8 2657 26.2
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 4.8e-206 723.8 2683 26.4
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 1.5e-204 718.8 2655 24.9
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 2.0e-204 718.4 2333 26.0
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 2.6e-204 718.0 2559 26.1
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 2.6e-204 718.0 2185 28.6
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 3.4e-204 717.6 2556 26.1
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 5.8e-204 716.8 2586 26.0
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 7.6e-204 716.5 2640 25.9
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 3.8e-203 714.1 2365 26.5
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 3.8e-203 714.1 2680 25.9
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 6.4e-203 713.4 2391 26.6
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 1.1e-202 712.6 2263 26.8
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 1.4e-202 712.2 2672 25.7
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 1.4e-202 712.2 2613 25.9
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 3.2e-202 711.1 2600 26.2
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 3.2e-202 711.1 2664 25.9
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 4.2e-202 710.7 2227 27.0
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 7.1e-202 709.9 2710 26.1
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 9.3e-202 709.5 2451 26.5
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 4.6e-201 707.2 2623 25.4
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 1.0e-200 706.1 2339 26.7
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 1.3e-200 705.7 2159 27.7
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 1.8e-200 705.3 2617 25.7
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 3.9e-200 704.1 2593 25.8
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 5.1e-200 703.7 2385 26.0
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 1.5e-199 702.2 2635 25.2
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 3.3e-199 701.0 2365 26.0
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 4.3e-199 700.7 2663 25.7
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 1.3e-198 699.1 2354 26.5
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 1.3e-198 699.1 2397 26.2
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.8e-198 698.0 2623 24.9
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 1.1e-197 696.0 2395 26.9
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 2.4e-197 694.9 2161 27.2
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 5.3e-197 693.7 2647 25.5
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 6.9e-197 693.3 2312 26.3
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 9.0e-197 693.0 2683 24.9
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 1.2e-196 692.6 2605 25.4
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 2.0e-196 691.8 2637 25.9
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 2.0e-196 691.8 2370 25.9
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 3.4e-196 691.0 2599 25.9
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 3.4e-196 691.0 2379 25.8
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.0e-195 689.5 2603 25.4
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 2.9e-195 688.0 2684 24.7
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 6.4e-195 686.8 2393 25.9
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 2.5e-194 684.9 2591 25.2
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 3.5e-193 681.0 2135 26.5
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 4.6e-193 680.6 2156 27.1
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 6.0e-193 680.2 2630 25.1
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 5.1e-192 677.2 2247 26.4
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 5.1e-192 677.2 2645 24.7
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 1.1e-191 676.0 2641 25.1
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 5.7e-191 673.7 2693 24.9
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 5.7e-191 673.7 2622 25.7
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 7.4e-191 673.3 2104 26.7
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 1.6e-190 672.2 2613 25.4
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 2.8e-190 671.4 2384 26.2
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 3.7e-190 671.0 2599 25.3
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 6.2e-190 670.2 2571 25.4
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 2.4e-189 668.3 2640 25.0
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 1.2e-188 666.0 1951 27.2
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 1.3e-187 662.5 2361 25.6
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 1.1e-186 659.4 2446 25.8
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 1.9e-186 658.7 2348 25.7
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 7.9e-185 653.3 2393 25.0
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 5.1e-184 650.6 2585 24.9
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 1.1e-183 649.4 2345 25.2
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 9.7e-183 646.4 2358 25.2
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 9.7e-183 646.4 2607 24.7
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 8.2e-182 643.3 2378 24.8
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 6.9e-181 640.2 2283 26.1
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 2.9e-179 634.8 2156 26.4
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 5.5e-178 630.6 2111 25.6
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 4.6e-177 627.5 2183 26.0
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 5.1e-176 624.0 2355 25.0
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 1.5e-172 612.5 2345 25.0
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.1e-167 596.3 2095 25.4
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 9.7e-167 593.2 2092 25.4
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 1.8e-165 589.0 1531 28.1
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 1.1e-154 553.1 1284 29.5
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 7.2e-154 550.4 1284 29.4
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 8.0e-153 547.0 2084 24.8
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 4.1e-149 534.6 2010 25.1
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 2.2e-147 528.9 2118 24.4
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 1.1e-146 526.6 1545 27.8
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 9.4e-146 523.5 1083 31.2
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 3.1e-141 508.4 836 36.4
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 4.7e-129 468.0 1802 25.3
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 1.0e-128 466.8 1082 29.2
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 2.7e-124 452.2 1598 26.3
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 1.1e-112 413.7 837 31.4
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 8.1e-105 387.5 1555 25.0
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 6.0e-100 371.3 1157 27.1
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 8.1e-97 360.9 1506 24.2
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 6.9e-96 357.8 1160 26.9
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 2.8e-81 309.3 587 32.7
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 1.4e-77 297.0 1468 23.3
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 1.1e-72 280.8 1485 22.4
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 2.7e-68 266.2 704 28.8
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 3.8e-62 245.7 863 27.0
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 5.0e-62 245.4 1491 21.5
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 1.9e-61 243.4 1193 24.1
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 8.2e-57 228.0 2254 22.4
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 6.9e-56 224.9 254 44.9
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 1.1e-53 217.6 892 26.1
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 1.0e-51 211.1 446 33.0
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 2.8e-41 176.4 334 33.5
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 1.7e-38 167.2 339 31.0
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 1.4e-35 157.5 506 26.9
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 2.2e-30 140.2 131 48.9
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 8.5e-30 138.3 233 34.3
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 4.9e-25 122.5 464 24.8
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 3.1e-24 119.8 177 37.9
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 7.0e-24 118.6 123 42.3
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 2.3e-19 103.6 148 38.5
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 5.4e-16 92.4 367 26.2
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 6.6e-14 85.5 107 43.0
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 3.3e-13 83.2 111 41.4
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 8.0e-12 78.6 362 24.6
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.3e-11 77.0 206 30.6
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 4.0e-11 76.3 133 34.6
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 5.2e-11 75.9 108 36.1
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 4.4e-10 72.8 579 21.6
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 4.9e-09 69.3 99 36.4
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 1.2e-07 64.7 127 28.3
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.2e-07 64.7 88 38.6


User provided reference genes

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