Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 5.2e-173 611.3 394 100.0
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 2.5e-58 230.3 350 47.4
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 1.1e-21 108.6 161 39.1
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 2.1e-20 104.4 161 39.1
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 3.0e-19 100.5 164 39.0
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 3.0e-19 100.5 161 37.3
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 5.1e-19 99.8 248 33.5
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 5.6e-18 96.3 161 37.3
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 7.4e-18 95.9 160 37.5
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 9.6e-18 95.5 161 36.6
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 3.7e-17 93.6 161 39.1
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 4.8e-17 93.2 161 39.1
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 6.2e-17 92.8 162 38.9
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 8.2e-17 92.4 161 38.5
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 8.2e-17 92.4 161 37.9
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 8.2e-17 92.4 161 36.6
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 1.1e-16 92.0 161 36.6
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 1.1e-16 92.0 161 36.6
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 1.1e-16 92.0 161 37.9
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 1.4e-16 91.7 161 38.5
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 1.4e-16 91.7 161 39.8
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 1.8e-16 91.3 161 36.6
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 1.8e-16 91.3 161 36.6
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 3.1e-16 90.5 161 36.6
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 4.0e-16 90.1 161 37.9
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 4.0e-16 90.1 167 37.7
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 6.9e-16 89.4 160 38.1
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 9.0e-16 89.0 163 36.2
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 1.5e-15 88.2 161 37.9
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 2.0e-15 87.8 161 36.0
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 2.0e-15 87.8 161 36.6
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 2.0e-15 87.8 161 36.0
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 2.0e-15 87.8 161 37.9
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 2.6e-15 87.4 161 36.6
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 2.6e-15 87.4 161 37.3
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 2.6e-15 87.4 161 37.9
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 3.4e-15 87.0 164 37.8
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 3.4e-15 87.0 161 36.6
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 4.5e-15 86.7 161 36.0
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 4.5e-15 86.7 162 35.8
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 4.5e-15 86.7 161 37.3
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 5.8e-15 86.3 161 35.4
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 5.8e-15 86.3 161 36.6
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 5.8e-15 86.3 161 36.0
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 7.6e-15 85.9 161 34.8
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 7.6e-15 85.9 195 32.8
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 1.0e-14 85.5 162 37.7
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 1.3e-14 85.1 161 36.0
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 1.3e-14 85.1 163 36.8
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.3e-14 85.1 161 36.0
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 1.7e-14 84.7 161 37.3
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 1.7e-14 84.7 161 37.3
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 1.7e-14 84.7 161 37.3
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 2.2e-14 84.3 161 36.0
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 2.2e-14 84.3 164 37.8
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 2.2e-14 84.3 161 36.0
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 2.2e-14 84.3 161 37.3
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 2.9e-14 84.0 162 37.7
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 2.9e-14 84.0 162 35.2
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 3.8e-14 83.6 161 36.6
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 3.8e-14 83.6 161 36.6
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 3.8e-14 83.6 161 36.6
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 3.8e-14 83.6 163 37.4
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 3.8e-14 83.6 161 36.0
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 3.8e-14 83.6 164 37.2
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 3.8e-14 83.6 164 37.8
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 4.9e-14 83.2 161 36.0
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 4.9e-14 83.2 164 36.0
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 6.5e-14 82.8 161 36.6
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 6.5e-14 82.8 161 36.0
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 8.4e-14 82.4 164 38.4
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 1.1e-13 82.0 163 38.7
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 1.9e-13 81.3 163 37.4
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 1.9e-13 81.3 162 35.8
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 1.9e-13 81.3 162 35.2
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 2.5e-13 80.9 164 34.1
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 2.5e-13 80.9 161 35.4
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 3.2e-13 80.5 162 37.0
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 4.2e-13 80.1 161 33.5
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 4.2e-13 80.1 162 35.2
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 5.5e-13 79.7 161 36.6
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 9.3e-13 79.0 161 34.8
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 9.3e-13 79.0 161 36.6
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 9.3e-13 79.0 161 36.0
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 9.3e-13 79.0 170 34.7
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 1.2e-12 78.6 164 34.1
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.2e-12 78.6 161 36.6
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.2e-12 78.6 161 36.6
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 1.6e-12 78.2 161 36.6
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 2.1e-12 77.8 166 36.7
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 2.1e-12 77.8 205 31.2
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 2.1e-12 77.8 161 34.2
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 2.7e-12 77.4 160 33.8
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.5e-12 77.0 161 36.0
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 4.6e-12 76.6 159 37.1
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 4.6e-12 76.6 162 33.3
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 4.6e-12 76.6 162 34.0
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 7.9e-12 75.9 164 34.8
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 1.0e-11 75.5 161 34.2
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 1.8e-11 74.7 160 34.4
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 2.3e-11 74.3 161 33.5
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 3.0e-11 73.9 162 33.3
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 5.1e-11 73.2 162 33.3
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 5.1e-11 73.2 164 32.9
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 6.7e-11 72.8 164 32.9
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 6.7e-11 72.8 162 32.1
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 6.7e-11 72.8 162 32.1
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 1.5e-10 71.6 166 33.1
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 1.9e-10 71.2 172 33.7
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 4.3e-10 70.1 161 30.4
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 4.3e-10 70.1 163 33.1
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 5.7e-10 69.7 116 37.1
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 7.4e-10 69.3 163 31.9
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 1.6e-09 68.2 162 30.9
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 2.8e-09 67.4 161 31.1
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 2.8e-09 67.4 240 24.6
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 4.8e-09 66.6 191 28.3
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 1.4e-08 65.1 161 30.4
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 6.9e-08 62.8 165 33.9
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.0e-06 58.9 98 36.7
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 1.0e-06 58.9 163 29.4
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 2.9e-06 57.4 161 29.2


User provided reference genes

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